Wall clock time and date at job start Tue Mar 31 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47237 * 2 1 4 4 C 1.46505 * 120.00053 * 269.99961 * 3 2 1 5 5 C 1.50699 * 109.46880 * 270.00212 * 4 3 2 6 6 H 1.07991 * 120.00264 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99427 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00613 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99732 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47061 * 89.99668 * 9 7 5 11 11 H 1.48500 * 109.46800 * 209.99885 * 9 7 5 12 12 H 1.48504 * 109.46880 * 329.99876 * 9 7 5 13 13 C 1.34773 * 120.00361 * 89.99762 * 3 2 1 14 14 O 1.21274 * 120.00684 * 179.97438 * 13 3 2 15 15 C 1.50709 * 119.99753 * 0.02562 * 13 3 2 16 16 N 1.46497 * 109.47078 * 179.97438 * 15 13 3 17 17 C 1.34774 * 119.99748 * 179.97438 * 16 15 13 18 18 O 1.21558 * 120.00487 * 0.02562 * 17 16 15 19 19 C 1.47804 * 119.99850 * 179.97438 * 17 16 15 20 20 C 1.39607 * 120.13442 * 0.31906 * 19 17 16 21 21 C 1.37904 * 119.86225 * 180.25469 * 20 19 17 22 22 C 1.38487 * 120.13363 * 359.44841 * 21 20 19 23 23 Br 1.89097 * 119.86130 * 180.27846 * 22 21 20 24 24 C 1.38476 * 120.27188 * 0.25944 * 22 21 20 25 25 C 1.37906 * 120.13374 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.47597 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47103 * 300.00280 * 1 2 3 28 28 H 1.09001 * 109.47481 * 59.99813 * 1 2 3 29 29 H 1.09006 * 109.46902 * 239.99907 * 2 1 3 30 30 H 1.09001 * 109.46769 * 120.00413 * 2 1 3 31 31 H 1.09001 * 109.46694 * 30.00237 * 4 3 2 32 32 H 1.08999 * 109.46982 * 149.99880 * 4 3 2 33 33 H 0.96999 * 120.00529 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46834 * 59.99335 * 15 13 3 35 35 H 1.09007 * 109.46580 * 299.99921 * 15 13 3 36 36 H 0.96996 * 120.00029 * 359.97438 * 16 15 13 37 37 H 1.07998 * 120.06709 * 359.97438 * 20 19 17 38 38 H 1.08002 * 119.93538 * 179.73250 * 21 20 19 39 39 H 1.07992 * 119.92962 * 180.02562 * 24 22 21 40 40 H 1.08004 * 120.06628 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1491 2.3895 -2.8780 8 7 3.3491 3.1256 -3.6181 9 14 5.9136 2.0965 -3.4169 10 1 5.9775 0.8751 -4.2591 11 1 6.3921 3.2637 -4.2004 12 1 6.7736 1.9178 -2.2196 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3101 2.2034 3.5858 17 6 2.1603 1.7798 4.8564 18 8 1.7620 0.6530 5.0786 19 6 2.4814 2.6850 5.9799 20 6 2.9338 3.9815 5.7280 21 6 3.2368 4.8196 6.7804 22 6 3.0823 4.3813 8.0849 23 35 3.4926 5.5397 9.5221 24 6 2.6283 3.0985 8.3412 25 6 2.3275 2.2491 7.2972 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6750 3.5155 -4.4444 34 1 2.6227 0.4187 2.5298 35 1 0.9443 1.0115 2.5301 36 1 2.6282 3.1024 3.4085 37 1 3.0504 4.3259 4.7110 38 1 3.5909 5.8214 6.5868 39 1 2.5095 2.7625 9.3606 40 1 1.9731 1.2489 7.4983 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:34 Heat of formation + Delta-G solvation = -43.563929 kcal Electronic energy + Delta-G solvation = -24037.825520 eV Core-core repulsion = 20284.848050 eV Total energy + Delta-G solvation = -3752.977470 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 368.052 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53086 -39.35040 -38.38054 -35.59988 -34.51476 -32.95209 -32.76010 -31.50739 -30.23617 -30.07152 -28.43748 -26.43087 -23.78012 -23.17217 -23.08268 -22.37772 -20.57720 -19.18697 -18.04460 -16.77581 -16.51214 -16.30997 -15.85383 -15.73482 -15.54885 -15.02499 -14.85374 -14.51988 -14.21861 -14.02359 -13.61731 -13.52346 -13.38491 -13.01161 -12.70427 -12.16016 -12.09702 -12.08787 -11.70636 -11.64690 -11.28045 -11.21941 -10.97620 -10.82082 -10.70694 -10.60854 -10.22279 -10.17506 -9.72774 -9.49916 -9.30179 -9.19555 -9.05155 -8.50243 -7.83541 -6.11317 -4.16456 0.26118 0.87942 1.15809 2.50852 2.89631 3.14712 3.26005 3.33029 3.37345 3.44849 3.81707 4.31121 4.38809 4.42741 4.50552 4.81902 4.84289 4.92075 5.14813 5.23513 5.24047 5.36573 5.47734 5.51319 5.57973 5.70177 5.72669 5.72759 5.89505 5.97998 6.16363 6.18798 6.29223 6.43576 6.92889 7.32020 7.36525 7.43009 7.84051 8.01111 8.14330 8.24085 8.73017 8.90818 9.48864 10.96796 Molecular weight = 368.05amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.001912 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.331539 B =14644.378140 C =16008.686678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.542 6.542 15 C 0.098 3.902 16 N -0.706 5.706 17 C 0.558 3.442 18 O -0.538 6.538 19 C -0.115 4.115 20 C -0.078 4.078 21 C -0.097 4.097 22 C -0.070 4.070 23 Br -0.047 7.047 24 C -0.101 4.101 25 C -0.054 4.054 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.412 0.588 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 0.695 25.186 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.286 3.714 14 O -0.420 6.420 15 C -0.029 4.029 16 N -0.361 5.361 17 C 0.344 3.656 18 O -0.417 6.417 19 C -0.118 4.118 20 C -0.097 4.097 21 C -0.117 4.117 22 C -0.150 4.150 23 Br 0.039 6.961 24 C -0.120 4.120 25 C -0.074 4.074 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.251 0.749 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.433 1.048 25.628 25.878 hybrid contribution 1.035 -0.007 -0.921 1.385 sum -2.399 1.041 24.708 24.846 Atomic orbital electron populations 1.22220 0.96459 1.01754 1.02380 1.21521 0.93791 0.83798 1.03153 1.48224 1.62807 1.13426 1.07488 1.19339 0.96495 0.93658 0.77797 1.21402 0.96800 1.32129 1.06384 0.92414 1.24933 0.97925 0.94833 0.96359 1.69923 1.35756 1.33287 1.14291 0.86490 0.84545 0.77727 0.78625 1.20595 1.21061 1.19883 1.20136 0.79019 0.87044 0.85247 1.90653 1.46516 1.18014 1.86813 1.21274 1.02928 0.93554 0.85182 1.45672 1.67115 1.18672 1.04616 1.18125 0.78058 0.86831 0.82549 1.90777 1.46373 1.19717 1.84824 1.20103 1.02951 0.94628 0.94125 1.21488 0.95856 0.92391 0.99978 1.21108 0.99446 1.00757 0.90345 1.22076 1.04480 0.95325 0.93109 1.96762 1.93164 1.62839 1.43347 1.21110 0.98851 0.91805 1.00271 1.21297 0.95495 1.00228 0.90385 0.91872 0.93016 0.91918 0.89506 0.91417 0.94708 0.93745 0.92638 0.88601 0.88643 0.74856 0.84067 0.84116 0.84237 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.10 1.53 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -11.63 2.46 -175.06 -0.43 -12.06 16 4 C 0.25 6.12 5.16 -5.19 -0.03 6.09 16 5 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 9 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.50 9.58 7.74 -10.98 -0.09 9.50 16 14 O -0.54 -12.26 15.25 5.56 0.08 -12.18 16 15 C 0.10 1.45 4.71 -5.19 -0.02 1.42 16 16 N -0.71 -9.86 5.48 -62.44 -0.34 -10.20 16 17 C 0.56 7.60 7.77 -12.35 -0.10 7.50 16 18 O -0.54 -8.61 16.35 5.32 0.09 -8.52 16 19 C -0.11 -1.28 5.87 -104.96 -0.62 -1.89 16 20 C -0.08 -0.75 9.54 -39.19 -0.37 -1.13 16 21 C -0.10 -0.85 9.77 -39.61 -0.39 -1.24 16 22 C -0.07 -0.61 6.23 -39.40 -0.25 -0.86 16 23 Br -0.05 -0.37 33.69 -68.01 -2.29 -2.66 16 24 C -0.10 -0.84 9.77 -39.62 -0.39 -1.23 16 25 C -0.05 -0.53 9.59 -39.19 -0.38 -0.91 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.10 1.35 7.40 -51.93 -0.38 0.96 16 35 H 0.10 1.28 7.19 -51.92 -0.37 0.91 16 36 H 0.41 5.62 5.47 -40.82 -0.22 5.39 16 37 H 0.14 1.26 6.40 -52.49 -0.34 0.92 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.15 1.35 7.65 -52.48 -0.40 0.94 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -32.39 364.39 -9.25 -41.64 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.89 Total: 3.44 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.68 Total: 3.85 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.04 Total: -47.40 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.70 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.29 Total: -2.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.39 -9.25 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.924 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds