Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48492 * 109.47122 * 239.99789 * 3 2 1 5 5 H 1.48509 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47238 * 119.99303 * 3 2 1 7 7 C 1.37880 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00160 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.34969 * 125.97498 * 125.02117 * 10 9 7 12 12 C 1.35241 * 107.85840 * 179.68900 * 11 10 9 13 13 C 1.40401 * 107.86938 * 0.43116 * 12 11 10 14 14 N 1.40178 * 125.97450 * 179.82669 * 13 12 11 15 15 C 1.34781 * 119.99871 * 359.71847 * 14 13 12 16 16 O 1.21591 * 119.99874 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99930 * 179.97438 * 15 14 13 18 18 C 1.40180 * 119.99998 * 185.31074 * 17 15 14 19 19 C 1.38859 * 119.99176 * 213.27838 * 18 17 15 20 20 C 1.38052 * 120.01040 * 179.97438 * 19 18 17 21 21 C 1.38936 * 119.98918 * 0.02562 * 20 19 18 22 22 S 1.76200 * 120.01028 * 180.02562 * 21 20 19 23 23 C 1.81404 * 103.00277 * 179.97438 * 22 21 20 24 24 F 1.39896 * 109.46906 * 299.99826 * 23 22 21 25 25 F 1.39902 * 109.46817 * 59.99511 * 23 22 21 26 26 C 1.38947 * 119.98337 * 0.27407 * 21 20 19 27 27 C 1.38058 * 119.98331 * 359.44730 * 26 21 20 28 28 N 1.31212 * 108.05285 * 359.56412 * 13 12 11 29 29 H 0.96998 * 120.00424 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46477 * 59.99315 * 9 7 2 31 31 H 1.08997 * 109.46777 * 299.99788 * 9 7 2 32 32 H 1.07999 * 126.06495 * 359.95762 * 11 10 9 33 33 H 1.08004 * 126.06170 * 180.25712 * 12 11 10 34 34 H 0.96996 * 120.00220 * 179.71142 * 14 13 12 35 35 H 0.96995 * 120.00057 * 5.31215 * 17 15 14 36 36 H 1.07998 * 119.99053 * 0.02562 * 19 18 17 37 37 H 1.07997 * 120.00229 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47251 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.00825 * 179.73029 * 26 21 20 40 40 H 1.08001 * 119.98904 * 180.27600 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2419 -4.6226 0.8950 12 6 3.2563 -5.4464 0.5466 13 6 3.8683 -4.9152 -0.5999 14 7 4.9639 -5.4663 -1.2788 15 6 5.5278 -6.6069 -0.8342 16 8 5.0864 -7.1576 0.1559 17 7 6.5809 -7.1371 -1.4872 18 6 7.0972 -8.3792 -1.0928 19 6 8.4577 -8.6331 -1.2061 20 6 8.9666 -9.8561 -0.8173 21 6 8.1172 -10.8332 -0.3131 22 16 8.7662 -12.3940 0.1840 23 6 7.2928 -13.2864 0.7526 24 9 6.7039 -12.5871 1.8116 25 9 6.3781 -13.3950 -0.3004 26 6 6.7550 -10.5810 -0.2057 27 6 6.2479 -9.3556 -0.5894 28 7 3.2317 -3.8158 -0.9282 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 1.5778 -4.7523 1.7368 33 1 3.5461 -6.3508 1.0610 34 1 5.3162 -5.0268 -2.0684 35 1 6.9816 -6.6591 -2.2301 36 1 9.1178 -7.8734 -1.5977 37 1 10.0248 -10.0533 -0.9051 38 1 7.5788 -14.2829 1.0893 39 1 6.0938 -11.3417 0.1821 40 1 5.1897 -9.1579 -0.5018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097164598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = 5.182140 kcal Electronic energy + Delta-G solvation = -28772.206141 eV Core-core repulsion = 24159.019087 eV Total energy + Delta-G solvation = -4613.187054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.086 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.78720 -47.77791 -41.13334 -40.21228 -38.82438 -35.21482 -34.81424 -33.37679 -31.40773 -31.13198 -29.81284 -29.29981 -27.51576 -26.68044 -24.06994 -23.29125 -22.79826 -21.63365 -20.45438 -19.99916 -19.21759 -18.48814 -18.18757 -17.96792 -17.69112 -17.11076 -16.60628 -16.39942 -15.92321 -15.23032 -15.04471 -14.71040 -14.68216 -14.60933 -14.27215 -14.09937 -14.08672 -13.92753 -13.70914 -13.43647 -13.30165 -12.86127 -12.38479 -12.28711 -12.01460 -11.83087 -11.60316 -11.20548 -11.05854 -10.90818 -10.88472 -10.49247 -10.28256 -10.20099 -9.78911 -9.55940 -9.48689 -9.29725 -8.64853 -8.19631 -7.89205 -7.48541 -6.25993 -4.31273 0.26077 0.74505 1.03502 1.37733 2.13648 2.51588 2.94860 3.20754 3.24163 3.27580 3.31290 3.37115 3.45441 3.74262 3.78273 3.86272 4.12380 4.31512 4.44896 4.54757 4.92993 5.04657 5.09077 5.14194 5.42404 5.57193 5.64998 5.73861 5.88845 5.91801 6.09914 6.15370 6.44010 6.47797 6.61831 6.80902 6.92392 7.04842 7.37399 7.64521 7.71782 7.88167 8.01473 8.33671 8.58949 8.77528 9.34330 10.82675 Molecular weight = 368.09amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.001596 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.377043 B =17539.740071 C =18291.146179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.258 3.742 10 N -0.318 5.318 11 C 0.053 3.947 12 C -0.286 4.286 13 C 0.272 3.728 14 N -0.636 5.636 15 C 0.712 3.288 16 O -0.547 6.547 17 N -0.684 5.684 18 C 0.183 3.817 19 C -0.133 4.133 20 C -0.068 4.068 21 C -0.117 4.117 22 S -0.103 6.103 23 C 0.273 3.727 24 F -0.178 7.178 25 F -0.180 7.180 26 C -0.097 4.097 27 C -0.100 4.100 28 N -0.304 5.304 29 H 0.268 0.732 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.409 0.591 35 H 0.410 0.590 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.130 0.870 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.186 -26.258 -2.180 32.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.100 5.100 11 C -0.097 4.097 12 C -0.317 4.317 13 C 0.018 3.982 14 N -0.286 5.286 15 C 0.412 3.588 16 O -0.421 6.421 17 N -0.333 5.333 18 C 0.086 3.914 19 C -0.156 4.156 20 C -0.091 4.091 21 C -0.230 4.230 22 S 0.134 5.866 23 C 0.110 3.890 24 F -0.160 7.160 25 F -0.162 7.162 26 C -0.121 4.121 27 C -0.122 4.122 28 N -0.135 5.135 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.244 0.756 35 H 0.246 0.754 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.173 0.827 39 H 0.147 0.853 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 18.436 -25.994 -2.081 31.936 hybrid contribution -0.573 1.382 -0.174 1.507 sum 17.862 -24.611 -2.255 30.494 Atomic orbital electron populations 1.69902 1.06033 1.27763 1.49600 1.24944 0.94991 0.99544 0.94583 0.86380 0.79377 0.81785 0.78907 1.19964 1.21031 1.20039 1.21211 0.93945 0.89387 1.52269 0.91366 1.19755 0.85585 0.81249 0.99326 1.49085 1.23162 1.19761 1.17986 1.22569 1.00324 0.90078 0.96758 1.21502 1.02092 1.06328 1.01788 1.18730 0.90667 0.94278 0.94543 1.41290 1.31300 1.24783 1.31214 1.15570 0.79971 0.80488 0.82763 1.90907 1.63626 1.61909 1.25643 1.42606 1.33487 1.20447 1.36717 1.17539 0.91809 0.84086 0.97980 1.20766 0.92834 0.97855 1.04126 1.20439 0.99072 0.91628 0.97979 1.21312 0.96698 0.97070 1.07897 1.86164 1.11204 1.10080 1.79187 1.24290 0.87585 0.99350 0.77802 1.93143 1.85598 1.80693 1.56538 1.93125 1.69140 1.96710 1.57193 1.21252 0.93072 0.97983 0.99761 1.21144 1.01163 0.90874 0.99028 1.77331 1.03729 1.16112 1.16316 0.92249 0.93684 0.92459 0.81413 0.82149 0.75581 0.75403 0.84674 0.84859 0.82693 0.85268 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.61 9.24 -34.44 -0.32 -14.92 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.26 6.49 6.26 -5.20 -0.03 6.46 16 10 N -0.32 -7.29 3.67 -62.56 -0.23 -7.52 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.56 9.60 -39.84 -0.38 -5.95 16 13 C 0.27 5.29 8.11 -154.38 -1.25 4.04 16 14 N -0.64 -9.32 5.45 -15.51 -0.08 -9.41 16 15 C 0.71 9.94 8.27 -86.91 -0.72 9.22 16 16 O -0.55 -9.36 11.15 5.29 0.06 -9.30 16 17 N -0.68 -6.71 5.36 -14.17 -0.08 -6.78 16 18 C 0.18 1.91 6.29 -83.58 -0.53 1.38 16 19 C -0.13 -1.09 9.95 -39.42 -0.39 -1.48 16 20 C -0.07 -0.56 9.78 -39.39 -0.39 -0.94 16 21 C -0.12 -1.12 6.10 -39.06 -0.24 -1.35 16 22 S -0.10 -0.75 22.16 -107.50 -2.38 -3.14 16 23 C 0.27 1.70 5.37 101.05 0.54 2.24 16 24 F -0.18 -1.54 15.66 2.25 0.04 -1.50 16 25 F -0.18 -1.45 15.62 2.25 0.04 -1.41 16 26 C -0.10 -1.06 8.68 -39.39 -0.34 -1.40 16 27 C -0.10 -1.19 8.65 -39.42 -0.34 -1.53 16 28 N -0.30 -6.84 12.42 31.44 0.39 -6.45 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 33 H 0.16 3.05 5.91 -52.48 -0.31 2.74 16 34 H 0.41 4.67 8.84 -40.82 -0.36 4.31 16 35 H 0.41 2.50 8.83 -40.82 -0.36 2.14 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 0.31 8.14 -51.92 -0.42 -0.11 16 39 H 0.13 1.38 4.54 -52.49 -0.24 1.15 16 40 H 0.15 1.96 6.41 -52.49 -0.34 1.63 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -33.73 368.02 -9.35 -43.09 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -3.68 Total: 6.87 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -4.68 Total: -1.79 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.74 Total: -54.55 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.06 Total: -9.30 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.07 Total: -2.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -2.38 Total: -3.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.73 -9.35 -43.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097164598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.268 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds