Wall clock time and date at job start Tue Mar 31 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00032 * 2 1 4 4 C 1.38754 * 120.05519 * 0.25405 * 3 2 1 5 5 C 1.38124 * 119.94110 * 180.31878 * 4 3 2 6 6 C 1.38289 * 120.05850 * 359.67937 * 5 4 3 7 7 C 1.50698 * 119.94817 * 180.02562 * 6 5 4 8 8 C 1.38246 * 120.11158 * 0.02562 * 6 5 4 9 9 C 1.38174 * 120.05388 * 0.02562 * 8 6 5 10 10 C 1.50698 * 120.02881 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.47385 * 215.05670 * 10 9 8 12 12 C 1.53002 * 109.47073 * 95.05155 * 10 9 8 13 13 N 1.46499 * 109.46964 * 335.05497 * 10 9 8 14 14 C 1.38108 * 119.99920 * 277.22510 * 13 10 9 15 15 N 1.32858 * 120.81532 * 0.02562 * 14 13 10 16 16 C 1.32125 * 121.19561 * 180.02562 * 15 14 13 17 17 N 1.31502 * 122.64732 * 359.97438 * 16 15 14 18 18 C 1.33204 * 120.68390 * 0.02562 * 17 16 15 19 19 C 1.40821 * 120.81485 * 180.02562 * 14 13 10 20 20 C 1.41166 * 134.69794 * 359.97438 * 19 14 13 21 21 N 1.30247 * 108.47147 * 179.97438 * 20 19 14 22 22 N 1.36308 * 134.61530 * 180.02562 * 18 17 16 23 23 C 1.46499 * 125.87620 * 359.96145 * 22 18 17 24 24 C 1.50699 * 109.47132 * 90.00043 * 23 22 18 25 25 H 1.08006 * 119.99807 * 0.02562 * 24 23 22 26 26 C 1.37875 * 120.00495 * 180.02562 * 24 23 22 27 27 N 1.31519 * 119.99569 * 0.02562 * 26 24 23 28 28 Si 1.86793 * 120.00406 * 180.02562 * 26 24 23 29 29 H 1.48495 * 109.47405 * 0.02562 * 28 26 24 30 30 H 1.48509 * 109.47088 * 119.99914 * 28 26 24 31 31 H 1.48506 * 109.47343 * 239.99831 * 28 26 24 32 32 H 1.08999 * 109.46611 * 59.99817 * 1 2 3 33 33 H 1.08999 * 109.47058 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47198 * 299.99811 * 1 2 3 35 35 H 1.07998 * 120.03118 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.96995 * 179.70429 * 5 4 3 37 37 H 1.08994 * 109.47327 * 269.98026 * 7 6 5 38 38 H 1.09003 * 109.46649 * 29.97770 * 7 6 5 39 39 H 1.08996 * 109.47359 * 149.97673 * 7 6 5 40 40 H 1.07997 * 119.97250 * 179.97438 * 8 6 5 41 41 H 1.08993 * 109.47179 * 180.02562 * 12 10 9 42 42 H 1.09004 * 109.47168 * 300.00259 * 12 10 9 43 43 H 1.08997 * 109.46849 * 59.99978 * 12 10 9 44 44 H 0.97000 * 120.00579 * 97.22790 * 13 10 9 45 45 H 1.08001 * 118.67697 * 179.72248 * 16 15 14 46 46 H 1.07997 * 125.76583 * 359.97438 * 20 19 14 47 47 H 1.08995 * 109.47470 * 210.00287 * 23 22 18 48 48 H 1.08998 * 109.46975 * 330.00686 * 23 22 18 49 49 H 0.97006 * 120.00172 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0013 6 6 3.3019 3.6758 -0.0066 7 6 3.9861 5.0185 -0.0133 8 6 4.0560 2.5171 -0.0058 9 6 3.4311 1.2848 -0.0002 10 6 4.2537 0.0221 0.0002 11 1 3.7451 -0.7431 -0.5862 12 6 4.4309 -0.4707 1.4378 13 7 5.5674 0.2950 -0.5879 14 6 5.7240 0.2912 -1.9601 15 7 4.6942 0.0426 -2.7619 16 6 4.8356 0.0365 -4.0756 17 7 5.9864 0.2730 -4.6663 18 6 7.0781 0.5328 -3.9487 19 6 6.9790 0.5507 -2.5437 20 6 8.2648 0.8477 -2.0424 21 7 9.0763 0.9971 -3.0502 22 7 8.3781 0.8105 -4.2500 23 6 8.9475 0.8979 -5.5970 24 6 8.8374 2.3150 -6.0979 25 1 8.3886 3.0746 -5.4749 26 6 9.3095 2.6418 -7.3514 27 7 9.8556 1.7167 -8.1101 28 14 9.1737 4.3984 -7.9719 29 1 8.5258 5.2411 -6.9350 30 1 10.5307 4.9273 -8.2620 31 1 8.3571 4.4236 -9.2121 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.2128 2.3204 0.0099 36 1 1.3340 4.5114 -0.0020 37 1 4.1477 5.3389 -1.0425 38 1 3.3598 5.7479 0.5002 39 1 4.9457 4.9399 0.4976 40 1 5.1344 2.5752 -0.0103 41 1 5.0263 -1.3837 1.4381 42 1 4.9397 0.2945 2.0241 43 1 3.4535 -0.6737 1.8753 44 1 6.3274 0.4783 -0.0137 45 1 3.9721 -0.1750 -4.6888 46 1 8.5308 0.9361 -0.9994 47 1 9.9965 0.6033 -5.5680 48 1 8.4016 0.2327 -6.2660 49 1 10.1874 1.9465 -8.9922 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:48 Heat of formation + Delta-G solvation = 102.599785 kcal Electronic energy + Delta-G solvation = -32942.159936 eV Core-core repulsion = 28678.225644 eV Total energy + Delta-G solvation = -4263.934292 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.175 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.35271 -40.52299 -38.52187 -37.85481 -36.72324 -33.93931 -33.17910 -31.96831 -31.34943 -31.16456 -29.97090 -28.67430 -28.01637 -27.15531 -26.04827 -24.22773 -23.79227 -23.37309 -22.40546 -21.57642 -20.50412 -20.02775 -18.25509 -17.82094 -17.31541 -16.64260 -16.58131 -16.24403 -15.92805 -15.58179 -15.10242 -14.80297 -14.57593 -14.33701 -14.29615 -14.06112 -13.91737 -13.81657 -13.67952 -13.31402 -13.16100 -12.84015 -12.41805 -12.32512 -12.27594 -12.13962 -12.00222 -11.78460 -11.63682 -11.58572 -11.24478 -11.04028 -10.99045 -10.92606 -10.71887 -10.69765 -10.26406 -10.01655 -9.79015 -9.21745 -8.94052 -8.60368 -8.55903 -8.18735 -8.08614 -7.58625 -6.19543 -4.25653 1.21423 1.31587 1.37237 2.02198 2.98584 3.08149 3.11760 3.18951 3.24899 3.31845 3.38785 3.60848 4.33589 4.42517 4.54903 4.59337 4.69436 4.76359 4.79888 4.83307 4.91208 4.97408 5.06659 5.07403 5.13166 5.16114 5.19119 5.22968 5.25403 5.35166 5.51924 5.52849 5.54744 5.64024 5.76003 5.77287 5.82218 5.85944 6.00698 6.17797 6.23001 6.43138 6.52892 6.66889 6.75336 7.00424 7.06726 7.14782 7.24130 7.32741 7.55954 7.76011 7.93894 7.98859 8.28437 8.75730 8.90073 9.39243 10.88748 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.002598 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.380449 B =10773.644172 C =11484.527888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.133 3.867 4 C -0.205 4.205 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.068 4.068 9 C -0.110 4.110 10 C 0.202 3.798 11 H 0.105 0.895 12 C -0.154 4.154 13 N -0.703 5.703 14 C 0.512 3.488 15 N -0.609 5.609 16 C 0.366 3.634 17 N -0.555 5.555 18 C 0.364 3.636 19 C -0.337 4.337 20 C 0.067 3.933 21 N -0.244 5.244 22 N -0.333 5.333 23 C 0.264 3.736 24 C -0.531 4.531 25 H 0.061 0.939 26 C 0.066 3.934 27 N -0.891 5.891 28 Si 0.907 3.093 29 H -0.273 1.273 30 H -0.281 1.281 31 H -0.280 1.280 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.125 0.875 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.408 0.592 45 H 0.192 0.808 46 H 0.181 0.819 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.859 -1.984 21.994 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.087 3.913 4 C -0.224 4.224 5 C -0.104 4.104 6 C -0.122 4.122 7 C -0.167 4.167 8 C -0.086 4.086 9 C -0.112 4.112 10 C 0.097 3.903 11 H 0.123 0.877 12 C -0.212 4.212 13 N -0.336 5.336 14 C 0.259 3.741 15 N -0.339 5.339 16 C 0.072 3.928 17 N -0.280 5.280 18 C 0.116 3.884 19 C -0.355 4.355 20 C -0.128 4.128 21 N -0.060 5.060 22 N -0.120 5.120 23 C 0.147 3.853 24 C -0.570 4.570 25 H 0.080 0.920 26 C -0.137 4.137 27 N -0.530 5.530 28 Si 0.734 3.266 29 H -0.197 1.197 30 H -0.207 1.207 31 H -0.206 1.206 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.244 0.756 45 H 0.209 0.791 46 H 0.198 0.802 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.184 -2.158 20.675 26.970 hybrid contribution -0.203 1.318 0.306 1.368 sum -17.386 -0.840 20.981 27.261 Atomic orbital electron populations 1.23020 0.78718 1.03789 1.01126 1.86071 1.21003 1.26734 1.88664 1.18670 0.91406 0.84168 0.97054 1.21133 0.99724 0.92327 1.09212 1.20760 0.93898 0.96926 0.98806 1.19803 0.93624 0.95524 1.03253 1.20720 1.00153 0.93409 1.02380 1.20664 0.99769 0.90502 0.97663 1.19540 0.90512 0.96031 1.05162 1.19582 0.82254 0.93973 0.94516 0.87679 1.22027 1.03132 1.01406 0.94598 1.44436 1.11278 1.75662 1.02219 1.17878 0.86785 0.84290 0.85116 1.67964 1.31086 1.28753 1.06120 1.24384 0.93298 0.88167 0.86932 1.67512 0.97757 1.22412 1.40331 1.18927 0.87859 0.93110 0.88548 1.19616 0.95804 1.24103 0.95954 1.23347 0.89620 1.00981 0.98827 1.76925 1.20951 1.18005 0.90088 1.49426 1.02600 1.52749 1.07204 1.19777 0.95432 0.99066 0.71036 1.21289 1.40846 0.93620 1.01236 0.92028 1.24898 0.94545 0.98227 0.96061 1.69933 1.39461 1.33119 1.10446 0.86295 0.77880 0.83648 0.78791 1.19712 1.20665 1.20587 0.92714 0.88345 0.92976 0.85674 0.86164 0.91334 0.91879 0.91700 0.85726 0.91573 0.92165 0.90684 0.75563 0.79119 0.80167 0.92859 0.92303 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.16 9.63 -19.43 -0.19 -3.35 16 3 C 0.13 1.48 6.66 -39.22 -0.26 1.22 16 4 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 5 C -0.09 -0.88 9.69 -39.60 -0.38 -1.26 16 6 C -0.12 -1.35 5.88 -104.60 -0.62 -1.97 16 7 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 8 C -0.07 -0.79 8.97 -39.60 -0.36 -1.15 16 9 C -0.11 -1.27 5.01 -104.47 -0.52 -1.79 16 10 C 0.20 2.15 2.52 -69.08 -0.17 1.97 16 11 H 0.11 1.33 7.19 -51.93 -0.37 0.95 16 12 C -0.15 -1.19 9.35 37.16 0.35 -0.84 16 13 N -0.70 -8.02 3.95 -54.72 -0.22 -8.24 16 14 C 0.51 8.05 7.49 -154.85 -1.16 6.89 16 15 N -0.61 -10.13 9.39 -13.62 -0.13 -10.26 16 16 C 0.37 6.44 12.24 -92.12 -1.13 5.31 16 17 N -0.56 -12.02 10.47 -13.97 -0.15 -12.16 16 18 C 0.36 8.16 8.04 -156.23 -1.26 6.90 16 19 C -0.34 -6.18 6.14 -106.82 -0.66 -6.84 16 20 C 0.07 1.15 11.87 -17.11 -0.20 0.94 16 21 N -0.24 -5.26 12.45 30.80 0.38 -4.88 16 22 N -0.33 -8.09 3.63 -61.65 -0.22 -8.31 16 23 C 0.26 7.14 6.19 -5.20 -0.03 7.11 16 24 C -0.53 -15.36 9.39 -34.44 -0.32 -15.68 16 25 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 26 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 27 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 28 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 29 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 32 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 35 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.12 1.41 7.26 -52.49 -0.38 1.03 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.41 3.64 8.45 -40.82 -0.34 3.29 16 45 H 0.19 2.64 8.06 -52.49 -0.42 2.21 16 46 H 0.18 2.07 8.06 -52.49 -0.42 1.65 16 47 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 48 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 49 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 415.42 15.07 6.26 6.26 Total: -1.00 -34.62 415.42 -11.21 -45.83 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.84 Total: 2.85 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -5.83 Total: 0.66 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: 0.41 Total: -69.17 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.19 Total: -3.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.62 -11.21 -45.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.428 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds