Wall clock time and date at job start Tue Mar 31 2020 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46511 * 109.46713 * 2 1 4 4 C 1.46493 * 120.00226 * 269.99870 * 3 2 1 5 5 C 1.53001 * 109.47401 * 270.00377 * 4 3 2 6 6 C 1.39255 * 119.99654 * 90.00499 * 3 2 1 7 7 C 1.39115 * 119.62638 * 4.97518 * 6 3 2 8 8 C 1.38260 * 119.16861 * 180.02562 * 7 6 3 9 9 C 1.39433 * 118.44778 * 0.02562 * 8 7 6 10 10 N 1.40099 * 120.40790 * 180.02562 * 9 8 7 11 11 C 1.38157 * 119.99885 * 32.30478 * 10 9 8 12 12 N 1.32889 * 120.81679 * 5.26867 * 11 10 9 13 13 C 1.32107 * 121.19349 * 179.71198 * 12 11 10 14 14 N 1.31523 * 122.64873 * 0.57935 * 13 12 11 15 15 C 1.33199 * 120.68444 * 359.71094 * 14 13 12 16 16 C 1.40829 * 120.81439 * 185.53809 * 11 10 9 17 17 C 1.41155 * 134.70270 * 0.03764 * 16 11 10 18 18 N 1.30258 * 108.47333 * 179.97438 * 17 16 11 19 19 N 1.36316 * 134.61178 * 179.97438 * 15 14 13 20 20 C 1.46496 * 125.87599 * 0.02562 * 19 15 14 21 21 C 1.50703 * 109.47175 * 90.00000 * 20 19 15 22 22 H 1.07996 * 119.99795 * 0.02562 * 21 20 19 23 23 C 1.37870 * 119.99866 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99719 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00429 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47040 * 89.99568 * 25 23 21 27 27 H 1.48499 * 109.47093 * 209.99859 * 25 23 21 28 28 H 1.48504 * 109.46558 * 329.99561 * 25 23 21 29 29 C 1.38641 * 119.18472 * 359.97438 * 9 8 7 30 30 N 1.31975 * 120.75686 * 0.02562 * 29 9 8 31 31 H 1.09003 * 109.47008 * 299.99176 * 1 2 3 32 32 H 1.08994 * 109.47014 * 59.99697 * 1 2 3 33 33 H 1.09003 * 109.46359 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47008 * 240.00824 * 2 1 3 35 35 H 1.08992 * 109.47534 * 120.00263 * 2 1 3 36 36 H 1.09005 * 109.46884 * 30.00669 * 4 3 2 37 37 H 1.09004 * 109.47357 * 149.99958 * 4 3 2 38 38 H 1.09004 * 109.46964 * 179.97438 * 5 4 3 39 39 H 1.08994 * 109.46900 * 299.99846 * 5 4 3 40 40 H 1.09000 * 109.47132 * 60.00000 * 5 4 3 41 41 H 1.07995 * 120.41027 * 0.02562 * 7 6 3 42 42 H 1.07996 * 120.77659 * 180.02562 * 8 7 6 43 43 H 0.96999 * 119.99825 * 212.30772 * 10 9 8 44 44 H 1.08003 * 118.68070 * 180.31417 * 13 12 11 45 45 H 1.08006 * 125.76441 * 359.93255 * 17 16 11 46 46 H 1.08998 * 109.46901 * 209.99913 * 20 19 15 47 47 H 1.08996 * 109.47372 * 330.00163 * 20 19 15 48 48 H 0.96999 * 120.00219 * 179.97438 * 24 23 21 49 49 H 1.08004 * 119.62177 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3814 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 3.7074 1.8316 -1.7104 6 6 2.2504 2.0377 1.2060 7 6 2.1163 1.3432 2.4039 8 6 2.3485 2.0043 3.5958 9 6 2.7098 3.3502 3.5494 10 7 2.9552 4.0597 4.7322 11 6 3.4931 3.4118 5.8274 12 7 3.8801 2.1431 5.7456 13 6 4.4005 1.5180 6.7866 14 7 4.5569 2.0975 7.9569 15 6 4.1943 3.3659 8.1412 16 6 3.6394 4.0778 7.0596 17 6 3.3494 5.3781 7.5260 18 7 3.6959 5.4539 8.7794 19 7 4.2242 4.2262 9.1981 20 6 4.7231 3.9195 10.5409 21 6 6.1932 4.2421 10.6165 22 1 6.7046 4.6365 9.7509 23 6 6.8850 4.0346 11.7908 24 7 8.1679 4.3166 11.8569 25 14 6.0003 3.3530 13.2882 26 1 6.0733 1.8699 13.2737 27 1 6.6463 3.8684 14.5220 28 1 4.5780 3.7790 13.2592 29 6 2.8243 3.9773 2.3182 30 7 2.5951 3.3154 1.1997 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.5816 1.6879 -2.0283 37 1 2.0954 3.1412 -1.1383 38 1 3.8889 2.3452 -2.6546 39 1 4.3882 2.2158 -0.9508 40 1 3.8745 0.7624 -1.8408 41 1 1.8343 0.3007 2.4027 42 1 2.2522 1.4903 4.5407 43 1 2.7475 5.0059 4.7821 44 1 4.7061 0.4883 6.6733 45 1 2.9143 6.1758 6.9421 46 1 4.1819 4.5167 11.2747 47 1 4.5722 2.8608 10.7516 48 1 8.6546 4.1710 12.6832 49 1 3.1041 5.0195 2.2740 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:43 Heat of formation + Delta-G solvation = 178.514400 kcal Electronic energy + Delta-G solvation = -31805.941390 eV Core-core repulsion = 27577.591754 eV Total energy + Delta-G solvation = -4228.349636 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.182 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.62844 -40.55776 -38.75003 -37.68363 -36.06166 -33.82181 -32.92548 -32.48125 -31.77107 -31.51195 -30.90056 -29.53930 -27.97756 -27.43394 -24.71593 -24.23426 -23.86384 -22.96288 -22.82788 -22.26469 -20.89987 -20.03388 -18.42064 -17.96618 -17.52963 -17.14528 -16.98280 -16.29265 -16.26914 -15.45761 -15.36848 -15.05091 -14.62145 -14.57611 -14.26773 -14.05148 -13.94836 -13.83214 -13.69024 -13.40692 -13.22092 -12.98987 -12.80841 -12.65445 -12.50064 -12.23057 -12.09844 -12.07849 -11.94099 -11.40260 -11.24758 -11.21423 -11.08213 -10.75936 -10.53774 -10.27129 -10.17392 -9.83781 -9.71268 -9.66927 -9.28286 -8.78438 -8.75816 -8.49843 -7.99671 -7.22006 -6.24415 -4.27454 0.91224 1.24062 1.47617 1.83675 2.61921 2.76169 2.89571 2.97454 3.19308 3.24729 3.26956 3.81593 4.23761 4.24243 4.29737 4.40271 4.57891 4.59137 4.71620 4.75499 4.79483 4.89707 4.93014 4.94916 5.00949 5.06241 5.10960 5.12269 5.18951 5.34783 5.36153 5.42479 5.51905 5.54313 5.60256 5.67549 5.79562 5.87626 5.97540 6.06250 6.14874 6.33444 6.46134 6.54359 6.76332 6.78800 6.85412 7.08244 7.24003 7.27283 7.34049 7.70161 8.02584 8.03156 8.27812 8.63411 8.77273 9.29997 10.88216 Molecular weight = 367.18amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.001799 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.949574 B =15562.472525 C =15809.758828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.612 5.612 4 C 0.127 3.873 5 C -0.167 4.167 6 C 0.384 3.616 7 C -0.219 4.219 8 C -0.025 4.025 9 C 0.055 3.945 10 N -0.637 5.637 11 C 0.503 3.497 12 N -0.608 5.608 13 C 0.367 3.633 14 N -0.550 5.550 15 C 0.367 3.633 16 C -0.328 4.328 17 C 0.072 3.928 18 N -0.236 5.236 19 N -0.331 5.331 20 C 0.236 3.764 21 C -0.539 4.539 22 H 0.078 0.922 23 C 0.080 3.920 24 N -0.887 5.887 25 Si 0.875 3.125 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.264 1.264 29 C 0.118 3.882 30 N -0.523 5.523 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.420 0.580 44 H 0.198 0.802 45 H 0.187 0.813 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.269 0.731 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.391 -6.771 -25.730 31.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.002 4.002 3 N -0.327 5.327 4 C 0.003 3.997 5 C -0.226 4.226 6 C 0.150 3.850 7 C -0.244 4.244 8 C -0.053 4.053 9 C -0.044 4.044 10 N -0.264 5.264 11 C 0.252 3.748 12 N -0.337 5.337 13 C 0.073 3.927 14 N -0.274 5.274 15 C 0.119 3.881 16 C -0.346 4.346 17 C -0.123 4.123 18 N -0.051 5.051 19 N -0.117 5.117 20 C 0.118 3.882 21 C -0.577 4.577 22 H 0.096 0.904 23 C -0.124 4.124 24 N -0.523 5.523 25 Si 0.701 3.299 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.189 1.189 29 C -0.042 4.042 30 N -0.239 5.239 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.150 0.850 42 H 0.166 0.834 43 H 0.257 0.743 44 H 0.214 0.786 45 H 0.204 0.796 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.748 -6.654 -25.311 30.544 hybrid contribution -0.433 -0.037 1.096 1.179 sum -16.182 -6.690 -24.216 29.883 Atomic orbital electron populations 1.22237 0.96291 1.02025 1.02555 1.21419 0.93961 0.81847 1.02928 1.46447 1.70872 1.12892 1.02538 1.21271 0.95682 0.98564 0.84134 1.22159 0.97709 1.01381 1.01302 1.18282 0.92471 0.88377 0.85881 1.21345 1.10614 1.01267 0.91127 1.21407 0.92047 0.92922 0.98969 1.18447 1.05818 0.93846 0.86265 1.41592 1.64281 1.11701 1.08787 1.17876 0.84740 0.88390 0.83792 1.68078 1.23949 1.08124 1.33513 1.24500 0.87833 0.98977 0.81361 1.67522 1.24899 1.08805 1.26159 1.18902 0.92249 0.89396 0.87529 1.19550 1.20344 0.98658 0.96043 1.23441 1.00753 0.95280 0.92841 1.76969 1.12865 1.02190 1.13121 1.48986 1.47611 1.04775 1.10283 1.20112 0.96484 0.97353 0.74242 1.21089 0.90871 1.45516 1.00254 0.90386 1.24773 0.94769 0.94565 0.98329 1.69871 1.07695 1.47114 1.27669 0.86872 0.80320 0.80089 0.82652 1.19485 1.20501 1.18870 1.22113 0.96924 0.99745 0.85409 1.67087 1.19202 1.07480 1.30159 0.92256 0.92532 0.91671 0.90608 0.90384 0.91628 0.89697 0.92057 0.92261 0.93088 0.85008 0.83382 0.74260 0.78556 0.79633 0.92963 0.93023 0.92111 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.12 0.70 5.97 -4.03 -0.02 0.68 16 3 N -0.61 -5.02 2.60 -173.77 -0.45 -5.47 16 4 C 0.13 0.92 6.19 -4.05 -0.03 0.89 16 5 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 6 C 0.38 3.99 7.38 -154.83 -1.14 2.85 16 7 C -0.22 -2.18 9.27 -39.25 -0.36 -2.55 16 8 C -0.03 -0.28 8.71 -39.13 -0.34 -0.62 16 9 C 0.06 0.61 6.34 -83.48 -0.53 0.08 16 10 N -0.64 -7.02 5.48 -9.53 -0.05 -7.07 16 11 C 0.50 7.37 7.30 -154.77 -1.13 6.24 16 12 N -0.61 -9.09 7.23 -13.60 -0.10 -9.19 16 13 C 0.37 5.77 12.24 -92.12 -1.13 4.65 16 14 N -0.55 -10.97 10.47 -13.96 -0.15 -11.12 16 15 C 0.37 7.71 8.04 -156.22 -1.26 6.45 16 16 C -0.33 -5.62 6.14 -106.81 -0.66 -6.27 16 17 C 0.07 1.15 11.88 -17.11 -0.20 0.94 16 18 N -0.24 -4.81 12.45 30.80 0.38 -4.42 16 19 N -0.33 -7.54 3.63 -61.64 -0.22 -7.77 16 20 C 0.24 5.83 5.26 -5.19 -0.03 5.80 16 21 C -0.54 -15.48 9.94 -34.44 -0.34 -15.82 16 22 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 23 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 24 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 25 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 29 C 0.12 1.21 11.11 -17.34 -0.19 1.02 16 30 N -0.52 -5.82 9.07 -12.24 -0.11 -5.93 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 35 H 0.08 0.43 5.98 -51.93 -0.31 0.12 16 36 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.08 0.72 7.30 -51.93 -0.38 0.34 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.13 1.06 6.02 -52.49 -0.32 0.75 16 42 H 0.15 1.76 6.30 -52.49 -0.33 1.43 16 43 H 0.42 3.40 8.70 -40.82 -0.35 3.05 16 44 H 0.20 2.30 8.06 -52.48 -0.42 1.88 16 45 H 0.19 1.90 8.06 -52.48 -0.42 1.48 16 46 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 47 H 0.05 1.25 7.57 -51.93 -0.39 0.85 16 48 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -34.96 409.43 -11.81 -46.78 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.69 Total: 2.87 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -6.70 Total: 5.20 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: 0.07 Total: -77.01 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.96 -11.81 -46.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.292 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds