Wall clock time and date at job start Tue Mar 31 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35495 * 126.98340 * 2 1 4 4 N 1.30520 * 107.30888 * 179.73983 * 3 2 1 5 5 N 1.28595 * 109.67181 * 359.97438 * 4 3 2 6 6 C 1.30528 * 109.67405 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34540 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.50058 * 180.02562 * 7 6 5 9 9 C 1.53121 * 109.50249 * 300.07478 * 7 6 5 10 10 C 1.53127 * 109.15776 * 177.55502 * 9 7 6 11 11 C 1.53033 * 109.31272 * 302.40926 * 10 9 7 12 12 N 1.46853 * 109.52588 * 59.15403 * 11 10 9 13 13 C 1.38101 * 111.00178 * 174.16124 * 12 11 10 14 14 N 1.32865 * 120.81582 * 124.21469 * 13 12 11 15 15 C 1.32117 * 121.19535 * 179.97438 * 14 13 12 16 16 N 1.31511 * 122.64888 * 0.02562 * 15 14 13 17 17 C 1.33193 * 120.68075 * 359.97438 * 16 15 14 18 18 C 1.40814 * 120.81227 * 303.93232 * 13 12 11 19 19 C 1.41160 * 134.69956 * 0.02562 * 18 13 12 20 20 N 1.30248 * 108.47230 * 180.02562 * 19 18 13 21 21 N 1.36316 * 134.61582 * 180.02562 * 17 16 15 22 22 C 1.46493 * 125.87327 * 359.97438 * 21 17 16 23 23 C 1.50701 * 109.47405 * 89.99931 * 22 21 17 24 24 H 1.08005 * 119.99624 * 0.02562 * 23 22 21 25 25 C 1.37865 * 120.00516 * 179.97438 * 23 22 21 26 26 N 1.31516 * 120.00021 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00494 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47043 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47425 * 119.99891 * 27 25 23 30 30 H 1.48501 * 109.47461 * 240.00303 * 27 25 23 31 31 C 1.46845 * 111.20084 * 298.26371 * 12 11 10 32 32 H 1.08993 * 109.47075 * 90.02317 * 1 2 3 33 33 H 1.08993 * 109.47609 * 210.03067 * 1 2 3 34 34 H 1.09008 * 109.46926 * 330.02896 * 1 2 3 35 35 H 1.07998 * 126.34289 * 359.77016 * 3 2 1 36 36 H 1.08995 * 109.52792 * 297.50467 * 9 7 6 37 37 H 1.09002 * 109.51710 * 57.69584 * 9 7 6 38 38 H 1.08997 * 109.50189 * 182.44638 * 10 9 7 39 39 H 1.08999 * 109.49798 * 62.36696 * 10 9 7 40 40 H 1.08999 * 109.46426 * 299.14405 * 11 10 9 41 41 H 1.08992 * 109.45720 * 179.16423 * 11 10 9 42 42 H 1.08004 * 118.67773 * 179.97438 * 15 14 13 43 43 H 1.08006 * 125.77086 * 359.97438 * 19 18 13 44 44 H 1.09002 * 109.47315 * 209.99683 * 22 21 17 45 45 H 1.09002 * 109.47268 * 330.00046 * 22 21 17 46 46 H 0.97005 * 120.00593 * 180.02562 * 26 25 23 47 47 H 1.09004 * 109.46153 * 301.72435 * 31 12 11 48 48 H 1.08991 * 109.45660 * 181.74975 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 0.0057 5 7 3.5090 -0.6430 0.0097 6 6 2.2799 -1.0824 0.0063 7 6 1.8475 -2.5261 0.0086 8 1 0.7588 -2.5798 0.0042 9 6 2.3985 -3.2267 -1.2365 10 6 2.0063 -4.7063 -1.1954 11 6 2.5429 -5.3366 0.0917 12 7 1.9854 -4.6315 1.2530 13 6 2.3459 -5.2558 2.4310 14 7 2.9736 -4.5862 3.3917 15 6 3.3215 -5.1758 4.5217 16 7 3.0736 -6.4440 4.7658 17 6 2.4486 -7.2001 3.8647 18 6 2.0519 -6.6160 2.6457 19 6 1.4151 -7.6253 1.8916 20 7 1.4171 -8.7251 2.5894 21 7 2.0565 -8.5047 3.8161 22 6 2.2557 -9.5008 4.8716 23 6 1.0724 -9.4876 5.8047 24 1 0.2536 -8.8055 5.6287 25 6 1.0344 -10.3467 6.8822 26 7 2.0312 -11.1776 7.0962 27 14 -0.4327 -10.3308 8.0384 28 1 -1.4122 -9.3125 7.5812 29 1 -1.0756 -11.6693 8.0409 30 1 0.0231 -9.9980 9.4120 31 6 2.3888 -3.2196 1.2608 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3634 -0.8896 0.5143 34 1 -0.3633 0.8903 0.5134 35 1 1.9702 2.1169 -0.0035 36 1 1.9808 -2.7632 -2.1302 37 1 3.4848 -3.1388 -1.2531 38 1 2.4324 -5.2198 -2.0572 39 1 0.9202 -4.7956 -1.2189 40 1 3.6301 -5.2598 0.1079 41 1 2.2523 -6.3864 0.1305 42 1 3.8306 -4.5929 5.2750 43 1 0.9962 -7.5056 0.9034 44 1 2.3542 -10.4898 4.4239 45 1 3.1612 -9.2627 5.4297 46 1 2.0044 -11.7823 7.8542 47 1 3.4767 -3.1527 1.2714 48 1 1.9863 -2.7320 2.1486 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:25 Heat of formation + Delta-G solvation = 209.776513 kcal Electronic energy + Delta-G solvation = -32931.391432 eV Core-core repulsion = 28638.971511 eV Total energy + Delta-G solvation = -4292.419920 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.177 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.45342 -41.69855 -39.68616 -38.16357 -35.53623 -34.99309 -33.71690 -32.67474 -31.92786 -31.29474 -29.90118 -29.30683 -28.05683 -27.29649 -25.42237 -24.57167 -23.50988 -23.23771 -22.72417 -22.22917 -21.36407 -20.11119 -19.85356 -17.82328 -17.61821 -17.26398 -16.73440 -16.65093 -16.47072 -15.66545 -15.39642 -15.05884 -14.97790 -14.89828 -14.59468 -14.31252 -14.19754 -13.90511 -13.79805 -13.53239 -13.40201 -13.26959 -13.00212 -12.68579 -12.21640 -11.90704 -11.75721 -11.72144 -11.37280 -11.20613 -11.15557 -11.00990 -10.97153 -10.83475 -10.75780 -10.58135 -10.54057 -10.31869 -10.21427 -9.81219 -9.48573 -9.32529 -8.83570 -8.63613 -8.38382 -7.90796 -6.25371 -4.32074 0.99929 1.45335 1.73037 2.07621 2.60429 2.85952 2.95415 3.21136 3.25333 3.28395 3.34624 3.87774 4.08232 4.17422 4.21851 4.29821 4.36778 4.38939 4.45258 4.51759 4.60148 4.66660 4.74243 4.81089 4.90554 4.95722 5.06493 5.09062 5.10308 5.18819 5.26053 5.40801 5.42424 5.49033 5.54985 5.61669 5.63501 5.73578 5.81703 5.84386 6.01528 6.24379 6.38354 6.48434 6.58760 6.97881 7.00923 7.05617 7.26145 7.61411 7.76907 7.86543 8.10993 8.45433 8.60511 8.72202 9.33287 10.82903 Molecular weight = 368.18amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.002101 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.456903 B =13325.903765 C =13776.815049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.476 5.476 3 C 0.145 3.855 4 N -0.296 5.296 5 N -0.285 5.285 6 C 0.186 3.814 7 C 0.000 4.000 8 H 0.095 0.905 9 C -0.111 4.111 10 C -0.115 4.115 11 C 0.053 3.947 12 N -0.469 5.469 13 C 0.432 3.568 14 N -0.596 5.596 15 C 0.351 3.649 16 N -0.532 5.532 17 C 0.351 3.649 18 C -0.296 4.296 19 C 0.068 3.932 20 N -0.234 5.234 21 N -0.331 5.331 22 C 0.262 3.738 23 C -0.534 4.534 24 H 0.062 0.938 25 C 0.066 3.934 26 N -0.890 5.890 27 Si 0.908 3.092 28 H -0.272 1.272 29 H -0.280 1.280 30 H -0.280 1.280 31 C 0.080 3.920 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.218 0.782 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.197 0.803 43 H 0.189 0.811 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.268 0.732 47 H 0.069 0.931 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 21.445 -18.909 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.167 5.167 3 C -0.142 4.142 4 N -0.136 5.136 5 N -0.125 5.125 6 C -0.082 4.082 7 C -0.021 4.021 8 H 0.113 0.887 9 C -0.150 4.150 10 C -0.153 4.153 11 C -0.073 4.073 12 N -0.186 5.186 13 C 0.182 3.818 14 N -0.321 5.321 15 C 0.057 3.943 16 N -0.254 5.254 17 C 0.103 3.897 18 C -0.312 4.312 19 C -0.127 4.127 20 N -0.050 5.050 21 N -0.118 5.118 22 C 0.146 3.854 23 C -0.572 4.572 24 H 0.080 0.920 25 C -0.137 4.137 26 N -0.528 5.528 27 Si 0.735 3.265 28 H -0.197 1.197 29 H -0.206 1.206 30 H -0.206 1.206 31 C -0.048 4.048 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.234 0.766 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.213 0.787 43 H 0.205 0.795 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.509 20.294 -17.964 27.219 hybrid contribution -1.889 0.612 0.381 2.022 sum -4.398 20.905 -17.584 27.669 Atomic orbital electron populations 1.22163 0.75269 1.05634 1.04304 1.46215 1.09267 1.06762 1.54449 1.26441 0.87300 0.94889 1.05583 1.74283 1.18043 1.03370 1.17859 1.74270 1.16909 1.03018 1.18275 1.24679 0.87361 0.91860 1.04290 1.19686 1.01161 0.84077 0.97172 0.88725 1.21644 1.02351 0.95120 0.95863 1.21634 1.02333 0.94808 0.96531 1.22440 0.98118 0.98961 0.87795 1.58518 1.55402 1.03815 1.00888 1.19321 0.85438 0.86890 0.90114 1.68342 1.19261 1.39773 1.04707 1.24525 0.91351 0.86903 0.91563 1.67534 1.18873 1.06586 1.32428 1.19037 0.93199 0.87680 0.89820 1.19649 1.15561 0.95811 1.00179 1.23551 1.00032 0.89095 0.99980 1.76977 1.12456 1.22964 0.92570 1.49526 1.42297 1.06330 1.13612 1.19836 0.98849 0.85241 0.81492 1.21271 1.04285 1.21593 1.10095 0.91994 1.24900 0.96811 0.94679 0.97311 1.69925 1.31025 1.22108 1.29761 0.86283 0.81916 0.78039 0.80309 1.19700 1.20604 1.20564 1.21907 1.00685 0.85520 0.96667 0.89795 0.88717 0.88793 0.76598 0.91349 0.90345 0.89942 0.90378 0.92819 0.88697 0.78669 0.79454 0.92654 0.92194 0.92267 0.91279 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 10.91 59.85 0.65 0.83 16 2 N -0.48 -3.34 3.15 -122.69 -0.39 -3.72 16 3 C 0.15 1.14 12.74 -89.94 -1.15 -0.01 16 4 N -0.30 -3.64 12.21 29.69 0.36 -3.28 16 5 N -0.28 -3.66 12.21 32.80 0.40 -3.26 16 6 C 0.19 1.79 6.54 -154.98 -1.01 0.77 16 7 C 0.00 0.00 2.70 -91.69 -0.25 -0.24 16 8 H 0.09 0.61 6.89 -51.93 -0.36 0.25 16 9 C -0.11 -0.79 5.27 -26.60 -0.14 -0.93 16 10 C -0.12 -0.74 6.09 -26.65 -0.16 -0.90 16 11 C 0.05 0.49 5.23 -3.83 -0.02 0.47 16 12 N -0.47 -5.45 4.67 -172.85 -0.81 -6.26 16 13 C 0.43 6.68 6.42 -154.85 -0.99 5.69 16 14 N -0.60 -9.56 8.85 -13.62 -0.12 -9.68 16 15 C 0.35 5.89 12.24 -92.12 -1.13 4.76 16 16 N -0.53 -11.09 10.47 -13.97 -0.15 -11.23 16 17 C 0.35 7.61 8.04 -156.23 -1.26 6.35 16 18 C -0.30 -5.27 5.73 -106.82 -0.61 -5.88 16 19 C 0.07 1.13 10.70 -17.11 -0.18 0.95 16 20 N -0.23 -4.86 12.45 30.80 0.38 -4.48 16 21 N -0.33 -7.76 3.63 -61.64 -0.22 -7.98 16 22 C 0.26 6.90 6.19 -5.20 -0.03 6.87 16 23 C -0.53 -15.08 9.39 -34.44 -0.32 -15.41 16 24 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 25 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 26 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 27 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 16 28 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 30 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 31 C 0.08 0.87 3.94 -3.84 -0.02 0.85 16 32 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.09 0.22 7.18 -51.93 -0.37 -0.15 16 34 H 0.09 0.06 8.14 -51.92 -0.42 -0.36 16 35 H 0.22 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.88 5.00 -51.93 -0.26 0.62 16 42 H 0.20 2.52 8.06 -52.48 -0.42 2.10 16 43 H 0.19 2.17 6.90 -52.48 -0.36 1.81 16 44 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 48 H 0.09 1.10 7.73 -51.93 -0.40 0.69 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -36.35 396.74 -11.94 -48.29 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.37 Total: -2.01 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -6.72 Total: 5.92 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: 0.20 Total: -74.71 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.35 -11.94 -48.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.065 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 221.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 209.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds