Wall clock time and date at job start Tue Mar 31 2020 05:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38876 * 120.33643 * 2 1 4 4 C 1.38301 * 118.50884 * 180.02562 * 3 2 1 5 5 C 1.39148 * 119.09540 * 359.97438 * 4 3 2 6 6 N 1.38991 * 119.70743 * 180.02562 * 5 4 3 7 7 C 1.46508 * 120.00129 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47041 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47155 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47484 * 179.97438 * 9 8 7 11 11 C 1.38108 * 120.00075 * 179.97438 * 10 9 8 12 12 N 1.32858 * 120.81367 * 0.02562 * 11 10 9 13 13 C 1.32124 * 121.19386 * 179.97438 * 12 11 10 14 14 N 1.31512 * 122.64693 * 0.02562 * 13 12 11 15 15 C 1.33199 * 120.68272 * 359.97438 * 14 13 12 16 16 C 1.40820 * 120.81271 * 179.97438 * 11 10 9 17 17 C 1.41168 * 134.69620 * 0.02562 * 16 11 10 18 18 N 1.30249 * 108.46928 * 180.28266 * 17 16 11 19 19 N 1.36308 * 134.61952 * 180.02562 * 15 14 13 20 20 C 1.46505 * 125.86988 * 359.97438 * 19 15 14 21 21 C 1.50705 * 109.47150 * 90.00495 * 20 19 15 22 22 H 1.08007 * 119.99657 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00005 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00074 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99770 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47430 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47080 * 120.00072 * 25 23 21 28 28 H 1.48506 * 109.47165 * 240.00005 * 25 23 21 29 29 N 1.32397 * 120.58500 * 0.27743 * 5 4 3 30 30 C 1.31975 * 121.62372 * 359.43933 * 29 5 4 31 31 H 1.09005 * 109.47068 * 90.00596 * 1 2 3 32 32 H 1.08996 * 109.47703 * 209.99992 * 1 2 3 33 33 H 1.08999 * 109.47005 * 330.00452 * 1 2 3 34 34 H 1.07998 * 120.75072 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.45768 * 180.02562 * 4 3 2 36 36 H 0.96996 * 120.00367 * 180.02562 * 6 5 4 37 37 H 1.08994 * 109.47145 * 60.00131 * 7 6 5 38 38 H 1.08999 * 109.46880 * 300.00115 * 7 6 5 39 39 H 1.08997 * 109.47749 * 59.99862 * 8 7 6 40 40 H 1.08999 * 109.47153 * 299.99673 * 8 7 6 41 41 H 1.08997 * 109.47189 * 59.99171 * 9 8 7 42 42 H 1.09003 * 109.47007 * 299.99799 * 9 8 7 43 43 H 0.96999 * 120.00185 * 359.97438 * 10 9 8 44 44 H 1.08001 * 118.67895 * 180.02562 * 13 12 11 45 45 H 1.08002 * 125.76328 * 0.02562 * 17 16 11 46 46 H 1.09004 * 109.46916 * 209.99962 * 20 19 15 47 47 H 1.08998 * 109.47257 * 329.99995 * 20 19 15 48 48 H 0.96999 * 120.00033 * 180.02562 * 24 23 21 49 49 H 1.07996 * 119.57505 * 180.28825 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1986 0.0000 4 6 3.5907 1.1545 -0.0005 5 6 4.2282 -0.0823 -0.0005 6 7 5.6169 -0.1415 -0.0005 7 6 6.4028 1.0949 -0.0011 8 6 7.8937 0.7515 -0.0016 9 6 8.7144 2.0428 -0.0016 10 7 10.1420 1.7140 -0.0015 11 6 11.0834 2.7246 -0.0020 12 7 10.7123 4.0003 -0.0020 13 6 11.6064 4.9731 -0.0020 14 7 12.9018 4.7460 -0.0024 15 6 13.3735 3.5004 -0.0023 16 6 12.4600 2.4281 -0.0013 17 6 13.2193 1.2380 -0.0006 18 7 14.4827 1.5547 0.0059 19 7 14.6199 2.9486 -0.0022 20 6 15.8855 3.6867 -0.0026 21 6 16.3196 3.9403 1.4181 22 1 15.7132 3.5873 2.2392 23 6 17.4908 4.6229 1.6696 24 7 18.2289 5.0531 0.6698 25 14 18.0285 4.9378 3.4306 26 1 17.0306 4.3566 4.3644 27 1 19.3517 4.3056 3.6647 28 1 18.1310 6.4010 3.6628 29 7 3.5237 -1.2033 -0.0055 30 6 2.2041 -1.1913 0.0004 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6862 2.1440 -0.0004 35 1 4.1676 2.0675 -0.0001 36 1 6.0657 -1.0014 -0.0009 37 1 6.1641 1.6776 0.8886 38 1 6.1640 1.6768 -0.8914 39 1 8.1322 0.1691 -0.8915 40 1 8.1328 0.1695 0.8884 41 1 8.4759 2.6249 0.8885 42 1 8.4755 2.6252 -0.8914 43 1 10.4262 0.7866 -0.0011 44 1 11.2595 5.9959 -0.0016 45 1 12.8201 0.2345 -0.0008 46 1 16.6477 3.1007 -0.5163 47 1 15.7509 4.6383 -0.5168 48 1 19.0531 5.5330 0.8467 49 1 1.6625 -2.1257 0.0007 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:17 Heat of formation + Delta-G solvation = 147.972894 kcal Electronic energy + Delta-G solvation = -30135.272094 eV Core-core repulsion = 25905.598078 eV Total energy + Delta-G solvation = -4229.674015 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.182 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.40351 -40.62759 -38.59493 -37.54717 -36.23897 -34.05263 -33.63267 -32.80221 -31.83931 -31.31339 -30.93957 -29.28939 -27.35979 -26.86070 -25.13379 -24.16323 -23.97016 -23.26491 -22.45114 -21.86264 -21.69618 -20.09956 -18.19415 -17.72980 -17.53993 -17.08494 -16.68581 -16.32161 -16.29752 -15.55363 -15.43064 -15.19328 -14.80494 -14.79157 -14.55962 -14.40610 -14.08939 -14.00955 -13.71754 -13.39390 -13.35977 -13.27512 -12.91272 -12.82567 -12.32343 -12.20761 -12.19189 -11.89164 -11.88686 -11.66161 -11.15200 -11.00608 -10.92384 -10.78418 -10.40549 -10.29832 -10.11360 -10.09633 -9.82610 -9.79650 -9.28955 -8.70904 -8.60887 -8.24616 -8.01785 -7.67073 -6.22900 -4.29349 0.91711 1.06365 1.28093 1.91495 2.58233 2.93962 3.02269 3.12215 3.22697 3.29811 3.36378 3.53126 4.23905 4.30136 4.34832 4.37150 4.41356 4.45051 4.49794 4.62586 4.65381 4.71657 4.72517 4.81048 4.96016 5.02930 5.12175 5.12430 5.13835 5.17381 5.20499 5.28617 5.43522 5.47416 5.52767 5.63675 5.65935 5.67721 5.71905 5.95692 6.19715 6.28877 6.60030 6.65214 6.86912 7.01967 7.08882 7.14084 7.20023 7.47491 7.70839 7.80424 7.88572 7.90572 8.20773 8.70830 8.80566 9.35871 10.85422 Molecular weight = 367.18amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.001266 C = 0.001253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.657222 B =22112.712242 C =22338.691449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.204 4.204 3 C -0.034 4.034 4 C -0.235 4.235 5 C 0.398 3.602 6 N -0.726 5.726 7 C 0.133 3.867 8 C -0.146 4.146 9 C 0.137 3.863 10 N -0.709 5.709 11 C 0.509 3.491 12 N -0.618 5.618 13 C 0.366 3.634 14 N -0.553 5.553 15 C 0.363 3.637 16 C -0.338 4.338 17 C 0.068 3.932 18 N -0.242 5.242 19 N -0.332 5.332 20 C 0.263 3.737 21 C -0.533 4.533 22 H 0.062 0.938 23 C 0.067 3.933 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.280 1.280 29 N -0.544 5.544 30 C 0.148 3.852 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.405 0.595 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.409 0.591 44 H 0.195 0.805 45 H 0.182 0.818 46 H 0.054 0.946 47 H 0.060 0.940 48 H 0.267 0.733 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.107 -9.604 -3.083 34.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.209 4.209 3 C -0.060 4.060 4 C -0.259 4.259 5 C 0.163 3.837 6 N -0.359 5.359 7 C 0.008 3.992 8 C -0.184 4.184 9 C 0.012 3.988 10 N -0.342 5.342 11 C 0.256 3.744 12 N -0.349 5.349 13 C 0.072 3.928 14 N -0.278 5.278 15 C 0.115 3.885 16 C -0.355 4.355 17 C -0.127 4.127 18 N -0.058 5.058 19 N -0.118 5.118 20 C 0.146 3.854 21 C -0.572 4.572 22 H 0.080 0.920 23 C -0.136 4.136 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.206 1.206 29 N -0.261 5.261 30 C -0.009 4.009 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.240 0.760 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.246 0.754 44 H 0.212 0.788 45 H 0.199 0.801 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -31.300 -9.480 -3.136 32.855 hybrid contribution -0.171 -0.142 0.964 0.990 sum -31.471 -9.622 -2.172 32.981 Atomic orbital electron populations 1.20568 0.90509 1.02614 1.02037 1.20603 0.97375 0.94046 1.08871 1.21239 0.93276 0.98052 0.93403 1.21434 0.95380 0.97403 1.11732 1.18338 0.85284 0.89345 0.90758 1.44431 1.01576 1.09055 1.80855 1.21234 0.89575 0.86265 1.02141 1.21963 0.93757 0.98800 1.03879 1.21102 0.79069 0.95538 1.03087 1.44208 1.04212 1.06498 1.79312 1.17869 0.84434 0.87665 0.84417 1.67936 1.39195 0.98211 1.29526 1.24417 0.82678 0.97905 0.87754 1.67518 1.16380 1.20436 1.23472 1.18941 0.86993 0.89198 0.93371 1.19616 0.94031 0.96321 1.25564 1.23365 0.90084 0.97767 1.01520 1.76944 1.18537 0.92232 1.18123 1.49473 1.05383 1.01715 1.55229 1.19806 0.75583 0.90759 0.99215 1.21290 1.07467 1.37291 0.91156 0.92000 1.24892 0.95766 0.94854 0.98129 1.69926 1.14483 1.37560 1.30924 0.86293 0.78506 0.78123 0.83677 1.19710 1.20640 1.20561 1.67146 1.08772 1.29552 1.20627 1.22281 0.88318 0.97472 0.92874 0.91612 0.91672 0.91809 0.85077 0.84987 0.75962 0.91348 0.91369 0.90339 0.90330 0.91060 0.91061 0.75427 0.78829 0.80095 0.92797 0.92225 0.92304 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.40 10.03 36.00 0.36 -0.04 16 2 C -0.20 -1.34 5.90 -104.46 -0.62 -1.96 16 3 C -0.03 -0.22 9.85 -39.32 -0.39 -0.61 16 4 C -0.23 -1.73 9.33 -39.22 -0.37 -2.09 16 5 C 0.40 3.44 7.65 -155.03 -1.19 2.25 16 6 N -0.73 -4.85 5.73 -60.42 -0.35 -5.20 16 7 C 0.13 0.66 4.89 -4.04 -0.02 0.64 16 8 C -0.15 -0.67 5.44 -26.73 -0.15 -0.82 16 9 C 0.14 0.99 5.73 -4.04 -0.02 0.97 16 10 N -0.71 -6.92 5.68 -60.09 -0.34 -7.26 16 11 C 0.51 7.47 7.55 -154.85 -1.17 6.30 16 12 N -0.62 -9.40 9.69 -13.62 -0.13 -9.53 16 13 C 0.37 5.99 12.24 -92.11 -1.13 4.87 16 14 N -0.55 -11.52 10.47 -13.97 -0.15 -11.66 16 15 C 0.36 7.92 8.04 -156.24 -1.26 6.66 16 16 C -0.34 -5.98 6.14 -106.82 -0.66 -6.63 16 17 C 0.07 1.12 11.87 -17.11 -0.20 0.92 16 18 N -0.24 -5.14 12.45 30.80 0.38 -4.76 16 19 N -0.33 -7.89 3.63 -61.64 -0.22 -8.12 16 20 C 0.26 7.01 6.19 -5.19 -0.03 6.98 16 21 C -0.53 -15.22 9.39 -34.44 -0.32 -15.55 16 22 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 23 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 24 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 25 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 N -0.54 -5.21 10.39 -12.44 -0.13 -5.34 16 30 C 0.15 1.13 10.85 -17.57 -0.19 0.94 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.06 0.21 8.09 -51.93 -0.42 -0.21 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.13 0.76 6.71 -52.49 -0.35 0.40 16 36 H 0.40 2.51 8.60 -40.82 -0.35 2.16 16 37 H 0.07 0.33 7.93 -51.93 -0.41 -0.08 16 38 H 0.07 0.32 7.93 -51.93 -0.41 -0.09 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.41 3.09 8.34 -40.82 -0.34 2.75 16 44 H 0.20 2.37 8.06 -52.49 -0.42 1.95 16 45 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 46 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 48 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 419.77 15.07 6.33 6.33 Total: -1.00 -35.19 419.77 -13.24 -48.43 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.90 Total: 0.84 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -7.44 Total: 4.61 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -0.20 Total: -76.86 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.19 -13.24 -48.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.400 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds