Wall clock time and date at job start Tue Mar 31 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38167 * 120.02653 * 2 1 4 4 C 1.38248 * 120.05699 * 180.02562 * 3 2 1 5 5 C 1.38292 * 120.10788 * 359.97416 * 4 3 2 6 6 C 1.38116 * 120.05879 * 0.02562 * 5 4 3 7 7 C 1.38719 * 120.02960 * 180.25226 * 2 1 3 8 8 O 1.35894 * 120.05691 * 0.02562 * 7 2 1 9 9 C 1.42894 * 117.00273 * 180.25629 * 8 7 2 10 10 C 1.52999 * 109.47401 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47110 * 64.64154 * 10 9 8 12 12 C 1.46899 * 110.99992 * 199.93505 * 11 10 9 13 13 C 1.38107 * 111.00150 * 75.98392 * 11 10 9 14 14 N 1.32860 * 120.81281 * 359.71855 * 13 11 10 15 15 C 1.32124 * 121.19494 * 179.69697 * 14 13 11 16 16 N 1.31509 * 122.64351 * 0.63893 * 15 14 13 17 17 C 1.33191 * 120.68481 * 359.66476 * 16 15 14 18 18 C 1.40817 * 120.81324 * 180.02562 * 13 11 10 19 19 C 1.41163 * 134.70087 * 0.02562 * 18 13 11 20 20 N 1.30257 * 108.46965 * 179.97438 * 19 18 13 21 21 N 1.36320 * 134.61575 * 179.97438 * 17 16 15 22 22 C 1.46495 * 125.87199 * 0.02562 * 21 17 16 23 23 C 1.50705 * 109.46735 * 90.00200 * 22 21 17 24 24 H 1.07993 * 120.00419 * 359.97438 * 23 22 21 25 25 C 1.37874 * 119.99694 * 180.02562 * 23 22 21 26 26 N 1.31519 * 119.99970 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00185 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47063 * 89.99733 * 27 25 23 29 29 H 1.48496 * 109.47374 * 209.99957 * 27 25 23 30 30 H 1.48500 * 109.46853 * 330.00195 * 27 25 23 31 31 H 1.08996 * 109.47013 * 90.00401 * 1 2 3 32 32 H 1.09008 * 109.46808 * 210.00153 * 1 2 3 33 33 H 1.08993 * 109.47160 * 330.00256 * 1 2 3 34 34 H 1.07998 * 119.97273 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.94495 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.96508 * 180.02562 * 5 4 3 37 37 H 1.07995 * 120.02955 * 180.02562 * 6 5 4 38 38 H 1.09007 * 109.46804 * 299.99549 * 9 8 7 39 39 H 1.09000 * 109.47143 * 59.99112 * 9 8 7 40 40 H 1.09007 * 109.47046 * 184.63946 * 10 9 8 41 41 H 1.08998 * 109.46964 * 304.64191 * 10 9 8 42 42 H 1.09006 * 109.46530 * 64.69403 * 12 11 10 43 43 H 1.09000 * 109.46939 * 184.68792 * 12 11 10 44 44 H 1.08994 * 109.47404 * 304.69864 * 12 11 10 45 45 H 1.08004 * 118.68039 * 180.28559 * 15 14 13 46 46 H 1.08002 * 125.76972 * 359.96719 * 19 18 13 47 47 H 1.08996 * 109.47143 * 209.99716 * 22 21 17 48 48 H 1.09001 * 109.47130 * 330.00067 * 22 21 17 49 49 H 0.97008 * 119.99535 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1970 -0.0005 5 6 4.2752 0.0010 -0.0005 6 6 3.5887 -1.1975 -0.0005 7 6 2.2012 -1.2010 -0.0053 8 8 1.5235 -2.3789 -0.0110 9 6 2.3035 -3.5761 -0.0105 10 6 1.3733 -4.7909 -0.0168 11 7 0.6096 -4.8163 -1.2714 12 6 -0.5948 -5.6468 -1.1377 13 6 1.3958 -5.2500 -2.3207 14 7 2.6695 -5.5747 -2.1279 15 6 3.4269 -5.9960 -3.1252 16 7 2.9801 -6.1080 -4.3570 17 6 1.7183 -5.8009 -4.6529 18 6 0.8687 -5.3526 -3.6225 19 6 -0.3919 -5.1014 -4.2060 20 7 -0.3190 -5.3717 -5.4782 21 7 0.9736 -5.8085 -5.7946 22 6 1.4444 -6.2050 -7.1240 23 6 1.2173 -7.6822 -7.3174 24 1 0.7677 -8.2673 -6.5288 25 6 1.5845 -8.2870 -8.5007 26 7 2.1325 -7.5746 -9.4609 27 14 1.3037 -10.1182 -8.7403 28 1 -0.0400 -10.3396 -9.3325 29 1 2.3420 -10.6633 -9.6513 30 1 1.3857 -10.8074 -7.4275 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.6584 2.1315 -0.0004 35 1 4.1195 2.1331 -0.0010 36 1 5.3552 0.0043 -0.0005 37 1 4.1315 -2.1312 -0.0001 38 1 2.9361 -3.5979 -0.8980 39 1 2.9287 -3.6022 0.8820 40 1 1.9654 -5.7023 0.0667 41 1 0.6854 -4.7260 0.8262 42 1 -1.2682 -5.1954 -0.4091 43 1 -1.0971 -5.7162 -2.1026 44 1 -0.3126 -6.6447 -0.8023 45 1 4.4558 -6.2536 -2.9217 46 1 -1.2688 -4.7453 -3.6857 47 1 0.8948 -5.6503 -7.8845 48 1 2.5085 -5.9863 -7.2127 49 1 2.3906 -8.0002 -10.2936 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200358.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:59 Heat of formation + Delta-G solvation = 120.311870 kcal Electronic energy + Delta-G solvation = -32623.661887 eV Core-core repulsion = 28360.495649 eV Total energy + Delta-G solvation = -4263.166239 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.175 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.68597 -40.34552 -39.08789 -37.78362 -37.02880 -33.85491 -32.99442 -32.51344 -31.61979 -30.92954 -29.93733 -29.38865 -27.26750 -26.86359 -26.21951 -24.31659 -23.66398 -23.03491 -22.24866 -21.72881 -21.28963 -19.93542 -18.24926 -17.76813 -17.32357 -16.73954 -16.51701 -16.14801 -15.97753 -15.69542 -15.38311 -14.92209 -14.76605 -14.50905 -14.36096 -14.22822 -13.89796 -13.64592 -13.48765 -13.27487 -13.14592 -12.97950 -12.55899 -12.46359 -12.40977 -12.19679 -12.02181 -11.68702 -11.57846 -11.46586 -11.26570 -11.11086 -11.00738 -10.90559 -10.82957 -10.75986 -10.33513 -10.23201 -9.84989 -9.32694 -8.98100 -8.86451 -8.64146 -8.37597 -8.20158 -7.90552 -6.26123 -4.33081 0.99762 1.16808 1.32127 1.70247 2.87449 2.93277 3.10490 3.21186 3.26945 3.32030 3.32846 3.61689 4.16444 4.28610 4.32589 4.57033 4.61508 4.63168 4.71102 4.83145 4.91914 4.98017 5.02799 5.09482 5.10091 5.12130 5.18749 5.24650 5.28249 5.38515 5.45130 5.48451 5.52277 5.56975 5.61450 5.62856 5.71387 5.71772 6.08088 6.20635 6.22305 6.30761 6.31270 6.38448 6.57937 6.67252 6.97572 7.00584 7.05190 7.24334 7.35506 7.59419 7.75663 7.85669 8.10562 8.57628 8.70520 9.32138 10.82130 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.002191 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.498367 B =12776.770212 C =13107.897119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.161 4.161 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.136 3.864 8 O -0.301 6.301 9 C 0.066 3.934 10 C 0.065 3.935 11 N -0.467 5.467 12 C 0.026 3.974 13 C 0.430 3.570 14 N -0.603 5.603 15 C 0.349 3.651 16 N -0.533 5.533 17 C 0.352 3.648 18 C -0.296 4.296 19 C 0.070 3.930 20 N -0.235 5.235 21 N -0.331 5.331 22 C 0.263 3.737 23 C -0.535 4.535 24 H 0.061 0.939 25 C 0.067 3.933 26 N -0.890 5.890 27 Si 0.908 3.092 28 H -0.277 1.277 29 H -0.282 1.282 30 H -0.273 1.273 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.196 0.804 46 H 0.189 0.811 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 12.300 23.631 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.179 4.179 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.090 3.910 8 O -0.214 6.214 9 C -0.009 4.009 10 C -0.061 4.061 11 N -0.184 5.184 12 C -0.120 4.120 13 C 0.181 3.819 14 N -0.329 5.329 15 C 0.055 3.945 16 N -0.255 5.255 17 C 0.103 3.897 18 C -0.313 4.313 19 C -0.125 4.125 20 N -0.051 5.051 21 N -0.117 5.117 22 C 0.146 3.854 23 C -0.573 4.573 24 H 0.079 0.921 25 C -0.137 4.137 26 N -0.528 5.528 27 Si 0.735 3.265 28 H -0.203 1.203 29 H -0.208 1.208 30 H -0.198 1.198 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.213 0.787 46 H 0.206 0.794 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.577 12.391 22.075 25.321 hybrid contribution 0.196 -1.461 0.338 1.512 sum -0.382 10.930 22.413 24.939 Atomic orbital electron populations 1.20582 0.90499 1.02450 1.02417 1.19292 0.96610 0.90393 1.05831 1.20870 0.94133 0.96745 0.98660 1.21004 0.94248 0.97986 1.04680 1.20920 0.99707 0.91955 0.97898 1.21287 0.93174 0.99494 1.08666 1.18864 0.90336 0.86020 0.95773 1.86103 1.35465 1.11884 1.87920 1.22845 0.93855 0.82083 1.02150 1.22171 0.96540 0.97289 0.90120 1.58597 1.07456 1.48248 1.04067 1.22652 0.90127 0.94731 1.04519 1.19476 0.89086 0.84374 0.88954 1.68241 1.05685 1.22633 1.36377 1.24482 0.98924 0.89181 0.81887 1.67511 1.13019 1.22523 1.22442 1.19029 0.89488 0.93486 0.87670 1.19653 0.98035 1.18591 0.94991 1.23576 0.96764 1.00820 0.91296 1.76991 0.98818 1.13978 1.15278 1.49531 1.04312 1.49580 1.08296 1.19830 0.96106 0.96617 0.72827 1.21220 1.42410 0.92246 1.01443 0.92064 1.24903 0.94422 0.99120 0.95227 1.69922 1.40647 1.36365 1.05848 0.86333 0.78101 0.83862 0.78230 1.20286 1.20762 1.19792 0.91346 0.91080 0.92057 0.85671 0.86171 0.86050 0.85494 0.90501 0.91680 0.89429 0.89428 0.89575 0.89528 0.93855 0.78735 0.79406 0.92663 0.92252 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.79 36.01 0.35 -0.61 16 2 C -0.12 -1.33 5.89 -104.47 -0.62 -1.94 16 3 C -0.09 -0.83 9.70 -39.60 -0.38 -1.21 16 4 C -0.16 -1.50 10.04 -39.56 -0.40 -1.90 16 5 C -0.09 -0.85 10.04 -39.61 -0.40 -1.25 16 6 C -0.21 -2.27 9.04 -39.43 -0.36 -2.63 16 7 C 0.14 1.63 6.66 -39.21 -0.26 1.37 16 8 O -0.30 -3.60 9.13 -19.41 -0.18 -3.78 16 9 C 0.07 0.69 4.80 37.16 0.18 0.87 16 10 C 0.07 0.63 5.02 -3.82 -0.02 0.61 16 11 N -0.47 -5.54 4.67 -180.65 -0.84 -6.38 16 12 C 0.03 0.24 9.31 60.06 0.56 0.80 16 13 C 0.43 6.55 6.04 -154.85 -0.94 5.61 16 14 N -0.60 -8.93 7.36 -13.62 -0.10 -9.03 16 15 C 0.35 5.58 12.24 -92.12 -1.13 4.46 16 16 N -0.53 -10.96 10.47 -13.96 -0.15 -11.10 16 17 C 0.35 7.65 8.04 -156.23 -1.26 6.39 16 18 C -0.30 -5.36 5.72 -106.82 -0.61 -5.97 16 19 C 0.07 1.21 10.66 -17.11 -0.18 1.02 16 20 N -0.24 -5.00 12.45 30.80 0.38 -4.62 16 21 N -0.33 -7.84 3.63 -61.64 -0.22 -8.07 16 22 C 0.26 6.96 6.19 -5.19 -0.03 6.93 16 23 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 24 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 25 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 26 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 27 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 30 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.68 7.54 -51.92 -0.39 0.29 16 33 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 38 H 0.08 0.95 6.18 -51.93 -0.32 0.63 16 39 H 0.07 0.54 7.66 -51.93 -0.40 0.15 16 40 H 0.09 0.84 7.27 -51.93 -0.38 0.46 16 41 H 0.09 0.67 7.94 -51.93 -0.41 0.25 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.86 4.96 -51.93 -0.26 0.61 16 44 H 0.04 0.39 8.13 -51.93 -0.42 -0.03 16 45 H 0.20 2.31 8.06 -52.48 -0.42 1.89 16 46 H 0.19 2.35 6.97 -52.49 -0.37 1.99 16 47 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 48 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 49 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 407.85 15.07 6.15 6.15 Total: -1.00 -33.18 407.85 -11.78 -44.95 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.62 Total: 1.38 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -5.91 Total: -1.11 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.19 Total: -64.05 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.18 Total: -3.78 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.18 -11.78 -44.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200358.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.266 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds