Wall clock time and date at job start Tue Mar 31 2020 07:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 116.99906 * 2 1 4 4 O 1.20828 * 120.00458 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99993 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47376 * 179.97438 * 5 3 2 7 7 C 1.36938 * 119.99798 * 275.74393 * 6 5 3 8 8 H 1.08001 * 120.00071 * 180.46203 * 7 6 5 9 9 C 1.38814 * 120.00099 * 0.46230 * 7 6 5 10 10 N 1.31619 * 120.00085 * 28.20853 * 9 7 6 11 11 Si 1.86801 * 120.00051 * 208.20055 * 9 7 6 12 12 H 1.48507 * 109.46667 * 84.99265 * 11 9 7 13 13 H 1.48493 * 109.47169 * 204.99041 * 11 9 7 14 14 H 1.48501 * 109.47191 * 324.99531 * 11 9 7 15 15 C 1.46500 * 120.00124 * 95.74009 * 6 5 3 16 16 C 1.50700 * 109.47106 * 270.00391 * 15 6 5 17 17 C 1.37976 * 119.87179 * 259.99930 * 16 15 6 18 18 C 1.38324 * 120.33847 * 180.02562 * 17 16 15 19 19 Br 1.89093 * 120.12782 * 180.20551 * 18 17 16 20 20 C 1.38477 * 119.74866 * 0.17971 * 18 17 16 21 21 C 1.37703 * 119.96836 * 359.92901 * 20 18 17 22 22 C 1.38929 * 120.78654 * 359.46176 * 21 20 18 23 23 O 1.36157 * 111.21224 * 180.87579 * 22 21 20 24 24 C 1.43771 * 109.29080 * 341.17690 * 23 22 21 25 25 C 1.51646 * 132.16880 * 179.43409 * 21 20 18 26 26 H 1.09001 * 109.46859 * 60.00513 * 1 2 3 27 27 H 1.08997 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46743 * 300.00227 * 1 2 3 29 29 H 1.08996 * 109.46942 * 59.99841 * 5 3 2 30 30 H 1.08999 * 109.46677 * 299.99912 * 5 3 2 31 31 H 0.96995 * 120.00433 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.46893 * 29.99847 * 15 6 5 33 33 H 1.08998 * 109.46742 * 150.00578 * 15 6 5 34 34 H 1.07995 * 119.83131 * 0.02562 * 17 16 15 35 35 H 1.07995 * 120.01599 * 179.91148 * 20 18 17 36 36 H 1.09004 * 110.74687 * 269.28993 * 24 23 22 37 37 H 1.09000 * 110.90467 * 146.01384 * 24 23 22 38 38 H 1.08999 * 110.93452 * 313.65651 * 25 21 20 39 39 H 1.08997 * 110.93539 * 77.29474 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.0617 3.3697 -1.1813 8 1 4.3751 4.4032 -1.1825 9 6 3.7398 2.7407 -2.3761 10 7 2.8723 1.7509 -2.3859 11 14 4.5377 3.2991 -3.9702 12 1 5.8492 2.6213 -4.1312 13 1 3.6566 2.9503 -5.1134 14 1 4.7417 4.7696 -3.9330 15 6 4.3117 3.3465 1.2610 16 6 3.0692 3.9760 1.8363 17 6 2.8453 5.3277 1.6739 18 6 1.7083 5.9156 2.1984 19 35 1.4046 7.7676 1.9674 20 6 0.7931 5.1426 2.8929 21 6 1.0165 3.7938 3.0576 22 6 2.1485 3.1902 2.5244 23 8 2.1638 1.8541 2.7857 24 6 1.2681 1.5728 3.8746 25 6 0.2244 2.7093 3.7619 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 2.6476 1.3111 -3.2207 32 1 4.7080 2.6153 1.9654 33 1 5.0594 4.1186 1.0793 34 1 3.5614 5.9299 1.1346 35 1 -0.0953 5.5974 3.3055 36 1 1.7925 1.6233 4.8289 37 1 0.7943 0.5995 3.7470 38 1 -0.0981 3.0412 4.7488 39 1 -0.6289 2.3970 3.1600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097379093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:15 Heat of formation + Delta-G solvation = -48.105389 kcal Electronic energy + Delta-G solvation = -27079.080305 eV Core-core repulsion = 23228.187241 eV Total energy + Delta-G solvation = -3850.893064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 369.041 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.78342 -38.72332 -37.35015 -35.92347 -34.40207 -32.80793 -31.79167 -30.82124 -29.39370 -28.35301 -27.90639 -25.99645 -25.70259 -23.14956 -22.26466 -21.36454 -20.26431 -19.56179 -17.19916 -16.83749 -16.29568 -16.06003 -16.01102 -15.25714 -15.06371 -14.90977 -14.59744 -13.74539 -13.68951 -13.44978 -13.12087 -12.92706 -12.74384 -12.46865 -12.20144 -12.05574 -11.72140 -11.54093 -11.32982 -11.20178 -11.00191 -10.91415 -10.81417 -10.63013 -10.34893 -10.15650 -10.00235 -9.95655 -9.80362 -9.43995 -8.91866 -8.46875 -8.32119 -7.61013 -7.15089 -5.95818 -3.15404 1.60472 1.70001 1.99087 3.37654 3.44850 3.46118 3.60405 3.94133 4.08832 4.24246 4.51327 4.59759 4.81622 5.03855 5.16562 5.26503 5.43460 5.46318 5.53349 5.62367 5.78631 5.82960 5.86579 5.91428 5.93274 6.02021 6.16593 6.34410 6.43318 6.46687 6.51338 6.62967 6.76322 6.81979 7.03476 7.17546 7.54411 7.69495 7.95079 8.12489 9.00493 9.56534 9.73927 10.10488 11.15473 Molecular weight = 369.04amu Principal moments of inertia in cm(-1) A = 0.009096 B = 0.005315 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.539326 B = 5266.900527 C = 7332.867268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.384 6.384 3 C 0.479 3.521 4 O -0.502 6.502 5 C 0.187 3.813 6 N -0.558 5.558 7 C -0.248 4.248 8 H 0.084 0.916 9 C 0.004 3.996 10 N -0.897 5.897 11 Si 0.906 3.094 12 H -0.286 1.286 13 H -0.294 1.294 14 H -0.280 1.280 15 C 0.183 3.817 16 C -0.092 4.092 17 C -0.044 4.044 18 C -0.118 4.118 19 Br -0.069 7.069 20 C -0.056 4.056 21 C -0.178 4.178 22 C 0.155 3.845 23 O -0.293 6.293 24 C 0.051 3.949 25 C -0.103 4.103 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.258 0.742 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 2.588 13.624 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.302 6.302 3 C 0.319 3.681 4 O -0.387 6.387 5 C 0.059 3.941 6 N -0.276 5.276 7 C -0.376 4.376 8 H 0.101 0.899 9 C -0.194 4.194 10 N -0.542 5.542 11 Si 0.735 3.265 12 H -0.213 1.213 13 H -0.221 1.221 14 H -0.206 1.206 15 C 0.056 3.944 16 C -0.097 4.097 17 C -0.065 4.065 18 C -0.197 4.197 19 Br 0.016 6.984 20 C -0.076 4.076 21 C -0.180 4.180 22 C 0.108 3.892 23 O -0.207 6.207 24 C -0.024 4.024 25 C -0.140 4.140 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.128 0.872 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.464 3.313 13.254 14.094 hybrid contribution -0.662 0.033 -1.008 1.206 sum -4.126 3.346 12.246 13.348 Atomic orbital electron populations 1.22738 0.80526 1.00731 1.00783 1.86536 1.20363 1.37282 1.86018 1.25121 0.93051 0.80087 0.69855 1.90470 1.66419 1.36212 1.45549 1.20674 0.86067 0.86256 1.01147 1.44601 1.73924 1.07367 1.01696 1.19313 1.38877 0.96667 0.82781 0.89850 1.24710 0.98018 0.98676 0.98002 1.69875 1.30519 1.27273 1.26531 0.86224 0.79243 0.78213 0.82774 1.21270 1.22050 1.20559 1.20005 0.91258 0.95742 0.87418 1.20277 0.99823 0.91519 0.98075 1.20601 0.95642 0.93680 0.96570 1.21315 1.00139 0.89925 1.08318 1.96573 1.96622 1.08100 1.97138 1.19859 0.98005 0.91558 0.98227 1.20503 0.96910 0.94443 1.06140 1.19244 0.93041 0.82703 0.94201 1.86880 1.63333 1.20558 1.49879 1.23753 0.89654 0.99356 0.89632 1.21692 0.98498 0.93054 1.00729 0.93224 0.90596 0.94185 0.87158 0.93000 0.93160 0.92448 0.91398 0.84961 0.86039 0.90893 0.88150 0.89690 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 10.56 101.05 1.07 1.95 16 2 O -0.38 -8.61 10.57 -39.24 -0.41 -9.03 16 3 C 0.48 11.72 4.13 36.01 0.15 11.87 16 4 O -0.50 -13.59 13.49 -20.87 -0.28 -13.87 16 5 C 0.19 4.41 5.51 -5.19 -0.03 4.39 16 6 N -0.56 -13.26 2.06 -175.98 -0.36 -13.63 16 7 C -0.25 -6.49 9.53 -15.06 -0.14 -6.64 16 8 H 0.08 2.15 7.97 -52.49 -0.42 1.73 16 9 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 10 N -0.90 -25.14 8.81 55.49 0.49 -24.65 16 11 Si 0.91 21.43 29.64 -169.99 -5.04 16.40 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.18 3.62 5.80 -5.19 -0.03 3.59 16 16 C -0.09 -1.82 5.00 -104.35 -0.52 -2.34 16 17 C -0.04 -0.82 9.38 -39.65 -0.37 -1.20 16 18 C -0.12 -2.05 6.23 -39.46 -0.25 -2.29 16 19 Br -0.07 -1.04 33.71 -68.01 -2.29 -3.33 16 20 C -0.06 -0.93 9.78 -39.69 -0.39 -1.32 16 21 C -0.18 -3.03 6.27 -104.10 -0.65 -3.68 16 22 C 0.15 2.94 4.84 -38.96 -0.19 2.75 16 23 O -0.29 -5.28 9.25 -21.69 -0.20 -5.48 16 24 C 0.05 0.66 8.01 38.06 0.30 0.97 16 25 C -0.10 -1.35 7.12 -26.52 -0.19 -1.54 16 26 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 29 H 0.11 2.81 6.25 -51.93 -0.32 2.48 16 30 H 0.05 1.09 7.83 -51.93 -0.41 0.68 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16 33 H 0.07 1.24 7.89 -51.93 -0.41 0.83 16 34 H 0.13 2.35 8.02 -52.49 -0.42 1.93 16 35 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -31.80 345.12 -9.13 -40.93 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.90 Total: 0.94 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.33 Total: 6.51 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.13 Total: -38.27 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.90 Total: -28.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.40 kcal Atomic # 35 Polarization: -1.04 SS G_CDS: -2.29 Total: -3.33 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.80 -9.13 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097379093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.171 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds