Wall clock time and date at job start Tue Mar 31 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38317 * 119.87835 * 2 1 4 4 C 1.38025 * 120.11887 * 180.02562 * 3 2 1 5 5 C 1.39324 * 119.87758 * 359.97438 * 4 3 2 6 6 C 1.48433 * 120.11433 * 180.02562 * 5 4 3 7 7 C 1.42290 * 126.93334 * 179.70925 * 6 5 4 8 8 C 1.35227 * 103.93274 * 180.26157 * 7 6 5 9 9 C 1.50701 * 126.65795 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47158 * 90.02758 * 9 8 7 11 11 C 1.39925 * 120.00439 * 180.02562 * 10 9 8 12 12 C 1.38719 * 120.07593 * 359.71604 * 11 10 9 13 13 C 1.38219 * 120.01312 * 179.75065 * 12 11 10 14 14 C 1.38529 * 120.17477 * 0.55243 * 13 12 11 15 15 F 1.35098 * 119.91728 * 179.72117 * 14 13 12 16 16 C 1.38350 * 120.15970 * 359.70523 * 14 13 12 17 17 C 1.38722 * 119.98335 * 0.02562 * 16 14 13 18 18 O 1.35798 * 120.08666 * 179.97438 * 17 16 14 19 19 C 1.34801 * 116.99994 * 354.39855 * 18 17 16 20 20 H 1.08001 * 120.00128 * 5.06851 * 19 18 17 21 21 C 1.38625 * 119.99793 * 185.06246 * 19 18 17 22 22 N 1.31573 * 120.00393 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47253 * 89.99980 * 23 21 19 25 25 H 1.48504 * 109.47089 * 209.99922 * 23 21 19 26 26 H 1.48505 * 109.47132 * 329.99814 * 23 21 19 27 27 O 1.34056 * 106.68206 * 359.97438 * 8 7 6 28 28 N 1.20911 * 111.83805 * 0.02562 * 27 8 7 29 29 C 1.39323 * 119.76100 * 0.27496 * 5 4 3 30 30 C 1.38018 * 119.88149 * 359.46975 * 29 5 4 31 31 H 1.09002 * 109.46927 * 89.99741 * 1 2 3 32 32 H 1.09002 * 109.47305 * 209.99260 * 1 2 3 33 33 H 1.08994 * 109.47225 * 329.99690 * 1 2 3 34 34 H 1.08000 * 119.94204 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.05824 * 180.02562 * 4 3 2 36 36 H 1.07997 * 128.02949 * 0.25786 * 7 6 5 37 37 H 1.08999 * 109.47328 * 210.02428 * 9 8 7 38 38 H 1.09001 * 109.47628 * 330.02832 * 9 8 7 39 39 H 0.97007 * 120.00045 * 359.97438 * 10 9 8 40 40 H 1.07995 * 119.98815 * 0.02562 * 12 11 10 41 41 H 1.08002 * 119.90769 * 180.28208 * 13 12 11 42 42 H 1.08001 * 120.00373 * 180.02562 * 16 14 13 43 43 H 0.97006 * 120.00374 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.05437 * 179.72468 * 29 5 4 45 45 H 1.08001 * 119.94253 * 180.23427 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5763 1.2051 -0.0005 5 6 4.2754 0.0000 -0.0005 6 6 5.7598 0.0001 -0.0005 7 6 6.6148 -1.1372 0.0052 8 6 7.8596 -0.6087 0.0086 9 6 9.1602 -1.3699 0.0156 10 7 9.5873 -1.6198 -1.3633 11 6 10.7754 -2.3157 -1.6126 12 6 11.5531 -2.7646 -0.5553 13 6 12.7238 -3.4564 -0.8031 14 6 13.1299 -3.6936 -2.1061 15 9 14.2780 -4.3654 -2.3422 16 6 12.3626 -3.2444 -3.1660 17 6 11.1836 -2.5543 -2.9250 18 8 10.4290 -2.1121 -3.9638 19 6 10.9375 -2.2734 -5.2018 20 1 11.8650 -2.8093 -5.3390 21 6 10.2698 -1.7513 -6.2987 22 7 9.1400 -1.0980 -6.1316 23 14 10.9740 -1.9754 -8.0143 24 1 10.4481 -3.2322 -8.6051 25 1 10.5786 -0.8248 -8.8659 26 1 12.4553 -2.0472 -7.9359 27 8 7.7119 0.7237 0.0043 28 7 6.5469 1.0471 -0.0005 29 6 3.5763 -1.2051 -0.0058 30 6 2.1961 -1.1994 0.0001 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8901 0.5137 33 1 -0.3633 0.8899 0.5138 34 1 1.6532 2.1329 -0.0004 35 1 4.1134 2.1421 -0.0001 36 1 6.3347 -2.1802 0.0067 37 1 9.9212 -0.7841 0.5311 38 1 9.0223 -2.3204 0.5311 39 1 9.0461 -1.3034 -2.1036 40 1 11.2414 -2.5774 0.4616 41 1 13.3256 -3.8091 0.0214 42 1 12.6814 -3.4311 -4.1809 43 1 8.6729 -0.7324 -6.8991 44 1 4.1134 -2.1421 -0.0103 45 1 1.6532 -2.1330 -0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150777115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:30 Heat of formation + Delta-G solvation = 41.285678 kcal Electronic energy + Delta-G solvation = -30864.566533 eV Core-core repulsion = 26344.501744 eV Total energy + Delta-G solvation = -4520.064790 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.132 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.10388 -44.94523 -39.54309 -39.27348 -36.80971 -35.30211 -34.87750 -32.48285 -32.30023 -31.82777 -31.19627 -29.33256 -28.38225 -27.41725 -25.57991 -25.43968 -23.77074 -22.90627 -22.05819 -21.73640 -21.15489 -20.16486 -18.24381 -18.04699 -17.63005 -17.29252 -16.32785 -16.16947 -15.84519 -15.54738 -15.29618 -15.17470 -14.91583 -14.39184 -14.36155 -14.19368 -14.09954 -14.05287 -13.74558 -13.58430 -13.40215 -13.30162 -13.15643 -12.64492 -12.62148 -12.43216 -12.15455 -11.98355 -11.65725 -11.57364 -11.48421 -11.32759 -11.10072 -10.87672 -10.72150 -10.61212 -10.45626 -9.70927 -9.56063 -9.39366 -9.20907 -8.89521 -8.54652 -7.81169 -6.57826 -6.51252 -4.07575 0.63724 1.15456 1.37843 2.04423 2.16895 2.34237 2.95057 3.10273 3.12189 3.16709 3.61128 3.85153 3.89391 4.00452 4.22434 4.39922 4.57301 4.60920 4.73906 4.88326 4.91098 4.99530 5.04520 5.09930 5.14166 5.20437 5.23022 5.27327 5.40239 5.44823 5.48740 5.52817 5.63634 5.73215 5.77501 5.81031 5.84757 6.02124 6.16647 6.28683 6.30810 6.32055 6.50063 6.68382 6.73276 6.95543 7.04068 7.19859 7.51554 7.82486 7.93695 8.15357 8.22084 8.94441 9.58722 10.65730 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.002218 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.774817 B =12621.543556 C =14885.660385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.088 4.088 5 C -0.023 4.023 6 C 0.053 3.947 7 C -0.200 4.200 8 C -0.034 4.034 9 C 0.215 3.785 10 N -0.744 5.744 11 C 0.150 3.850 12 C -0.143 4.143 13 C -0.197 4.197 14 C 0.091 3.909 15 F -0.157 7.157 16 C -0.241 4.241 17 C 0.125 3.875 18 O -0.174 6.174 19 C -0.388 4.388 20 H 0.093 0.907 21 C 0.041 3.959 22 N -0.861 5.861 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 O 0.116 5.884 28 N -0.352 5.352 29 C -0.089 4.089 30 C -0.120 4.120 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.175 0.825 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.413 0.587 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.270 0.730 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 0.256 14.419 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.024 4.024 6 C -0.103 4.103 7 C -0.222 4.222 8 C -0.097 4.097 9 C 0.089 3.911 10 N -0.381 5.381 11 C 0.050 3.950 12 C -0.166 4.166 13 C -0.218 4.218 14 C 0.070 3.930 15 F -0.136 7.136 16 C -0.263 4.263 17 C 0.070 3.930 18 O -0.078 6.078 19 C -0.464 4.464 20 H 0.110 0.890 21 C -0.164 4.164 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.191 1.191 27 O 0.045 5.955 28 N -0.052 5.052 29 C -0.108 4.108 30 C -0.138 4.138 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.193 0.807 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.249 0.751 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.156 0.844 43 H 0.080 0.920 44 H 0.147 0.853 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.517 1.829 14.419 19.182 hybrid contribution 0.390 -0.957 -1.312 1.670 sum -12.127 0.872 13.107 17.878 Atomic orbital electron populations 1.20826 0.90995 1.02868 1.02561 1.20058 0.96284 0.93170 0.98477 1.20974 0.93710 0.97798 1.01456 1.21223 0.94171 0.97535 0.97792 1.17685 0.87344 0.94182 1.03190 1.21946 0.94960 0.89227 1.04176 1.22494 0.90799 1.01019 1.07902 1.24349 0.98191 0.83622 1.03547 1.19495 0.88039 0.96860 0.86671 1.44225 1.24487 1.64182 1.05246 1.16992 0.88903 0.98627 0.90512 1.19935 0.95998 1.04149 0.96553 1.20289 0.99613 1.07481 0.94383 1.17253 0.83841 0.98153 0.93702 1.91385 1.48016 1.78611 1.95550 1.20797 0.97958 1.08179 0.99348 1.18568 0.90960 0.95904 0.87606 1.83895 1.40410 1.70422 1.13112 1.21292 1.08636 1.36683 0.79763 0.89005 1.25253 0.95863 0.95778 0.99459 1.70021 1.14658 1.33273 1.31631 0.85720 0.79237 0.78278 0.80310 1.19858 1.20257 1.19100 1.84827 1.21301 1.22829 1.66561 1.74114 0.89285 1.23340 1.18501 1.21126 0.94198 0.97063 0.98420 1.20955 0.93666 0.97799 1.01425 0.90909 0.91389 0.91449 0.85618 0.85354 0.80720 0.90310 0.89334 0.75075 0.85997 0.86398 0.84361 0.91985 0.85318 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.08 -0.71 5.88 -104.56 -0.62 -1.32 16 3 C -0.12 -1.18 9.68 -39.63 -0.38 -1.56 16 4 C -0.09 -1.04 9.70 -39.26 -0.38 -1.42 16 5 C -0.02 -0.29 5.88 -104.89 -0.62 -0.91 16 6 C 0.05 0.74 7.06 -82.47 -0.58 0.16 16 7 C -0.20 -2.51 10.45 -39.10 -0.41 -2.91 16 8 C -0.03 -0.44 6.84 -35.38 -0.24 -0.69 16 9 C 0.22 2.64 5.47 -5.19 -0.03 2.62 16 10 N -0.74 -12.63 5.72 -59.63 -0.34 -12.97 16 11 C 0.15 2.84 6.67 -83.52 -0.56 2.28 16 12 C -0.14 -2.30 9.31 -39.41 -0.37 -2.67 16 13 C -0.20 -3.34 10.02 -39.48 -0.40 -3.74 16 14 C 0.09 1.78 7.29 -39.43 -0.29 1.49 16 15 F -0.16 -2.99 17.26 2.25 0.04 -2.95 16 16 C -0.24 -5.23 9.14 -39.36 -0.36 -5.59 16 17 C 0.13 2.84 6.67 -38.94 -0.26 2.58 16 18 O -0.17 -4.62 9.00 -0.02 0.00 -4.62 16 19 C -0.39 -10.43 9.49 30.88 0.29 -10.14 16 20 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -24.38 13.67 55.48 0.76 -23.62 16 23 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 O 0.12 1.74 11.18 17.14 0.19 1.93 16 28 N -0.35 -5.46 11.82 33.32 0.39 -5.07 16 29 C -0.09 -0.93 9.60 -39.26 -0.38 -1.31 16 30 C -0.12 -1.10 9.68 -39.63 -0.38 -1.48 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.51 7.89 -52.49 -0.41 1.09 16 36 H 0.18 1.73 7.58 -52.49 -0.40 1.33 16 37 H 0.08 0.87 7.94 -51.93 -0.41 0.45 16 38 H 0.09 0.89 7.96 -51.93 -0.41 0.47 16 39 H 0.41 8.05 7.83 -40.82 -0.32 7.73 16 40 H 0.12 1.53 6.73 -52.49 -0.35 1.18 16 41 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.14 3.06 5.64 -52.49 -0.30 2.77 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.13 1.13 7.23 -52.49 -0.38 0.75 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -30.77 394.67 -8.65 -39.42 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -4.93 Total: 10.67 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -5.69 Total: -23.97 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.81 Total: -41.66 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.19 Total: -2.69 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.77 -8.65 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150777115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.701 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds