Wall clock time and date at job start Tue Mar 31 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38317 * 119.87835 * 2 1 4 4 C 1.38025 * 120.11887 * 180.02562 * 3 2 1 5 5 C 1.39324 * 119.87758 * 359.97438 * 4 3 2 6 6 C 1.48433 * 120.11433 * 180.02562 * 5 4 3 7 7 C 1.42290 * 126.93334 * 179.70925 * 6 5 4 8 8 C 1.35227 * 103.93274 * 180.26157 * 7 6 5 9 9 C 1.50701 * 126.65795 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47158 * 90.02758 * 9 8 7 11 11 C 1.39925 * 120.00439 * 180.02562 * 10 9 8 12 12 C 1.38719 * 120.07593 * 359.71604 * 11 10 9 13 13 C 1.38219 * 120.01312 * 179.75065 * 12 11 10 14 14 C 1.38529 * 120.17477 * 0.55243 * 13 12 11 15 15 F 1.35098 * 119.91728 * 179.72117 * 14 13 12 16 16 C 1.38350 * 120.15970 * 359.70523 * 14 13 12 17 17 C 1.38722 * 119.98335 * 0.02562 * 16 14 13 18 18 O 1.35798 * 120.08666 * 179.97438 * 17 16 14 19 19 C 1.34801 * 116.99994 * 354.39855 * 18 17 16 20 20 H 1.08001 * 120.00128 * 5.06851 * 19 18 17 21 21 C 1.38625 * 119.99793 * 185.06246 * 19 18 17 22 22 N 1.31573 * 120.00393 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47253 * 89.99980 * 23 21 19 25 25 H 1.48504 * 109.47089 * 209.99922 * 23 21 19 26 26 H 1.48505 * 109.47132 * 329.99814 * 23 21 19 27 27 O 1.34056 * 106.68206 * 359.97438 * 8 7 6 28 28 N 1.20911 * 111.83805 * 0.02562 * 27 8 7 29 29 C 1.39323 * 119.76100 * 0.27496 * 5 4 3 30 30 C 1.38018 * 119.88149 * 359.46975 * 29 5 4 31 31 H 1.09002 * 109.46927 * 89.99741 * 1 2 3 32 32 H 1.09002 * 109.47305 * 209.99260 * 1 2 3 33 33 H 1.08994 * 109.47225 * 329.99690 * 1 2 3 34 34 H 1.08000 * 119.94204 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.05824 * 180.02562 * 4 3 2 36 36 H 1.07997 * 128.02949 * 0.25786 * 7 6 5 37 37 H 1.08999 * 109.47328 * 210.02428 * 9 8 7 38 38 H 1.09001 * 109.47628 * 330.02832 * 9 8 7 39 39 H 0.97007 * 120.00045 * 359.97438 * 10 9 8 40 40 H 1.07995 * 119.98815 * 0.02562 * 12 11 10 41 41 H 1.08002 * 119.90769 * 180.28208 * 13 12 11 42 42 H 1.08001 * 120.00373 * 180.02562 * 16 14 13 43 43 H 0.97006 * 120.00374 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.05437 * 179.72468 * 29 5 4 45 45 H 1.08001 * 119.94253 * 180.23427 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5763 1.2051 -0.0005 5 6 4.2754 0.0000 -0.0005 6 6 5.7598 0.0001 -0.0005 7 6 6.6148 -1.1372 0.0052 8 6 7.8596 -0.6087 0.0086 9 6 9.1602 -1.3699 0.0156 10 7 9.5873 -1.6198 -1.3633 11 6 10.7754 -2.3157 -1.6126 12 6 11.5531 -2.7646 -0.5553 13 6 12.7238 -3.4564 -0.8031 14 6 13.1299 -3.6936 -2.1061 15 9 14.2780 -4.3654 -2.3422 16 6 12.3626 -3.2444 -3.1660 17 6 11.1836 -2.5543 -2.9250 18 8 10.4290 -2.1121 -3.9638 19 6 10.9375 -2.2734 -5.2018 20 1 11.8650 -2.8093 -5.3390 21 6 10.2698 -1.7513 -6.2987 22 7 9.1400 -1.0980 -6.1316 23 14 10.9740 -1.9754 -8.0143 24 1 10.4481 -3.2322 -8.6051 25 1 10.5786 -0.8248 -8.8659 26 1 12.4553 -2.0472 -7.9359 27 8 7.7119 0.7237 0.0043 28 7 6.5469 1.0471 -0.0005 29 6 3.5763 -1.2051 -0.0058 30 6 2.1961 -1.1994 0.0001 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8901 0.5137 33 1 -0.3633 0.8899 0.5138 34 1 1.6532 2.1329 -0.0004 35 1 4.1134 2.1421 -0.0001 36 1 6.3347 -2.1802 0.0067 37 1 9.9212 -0.7841 0.5311 38 1 9.0223 -2.3204 0.5311 39 1 9.0461 -1.3034 -2.1036 40 1 11.2414 -2.5774 0.4616 41 1 13.3256 -3.8091 0.0214 42 1 12.6814 -3.4311 -4.1809 43 1 8.6729 -0.7324 -6.8991 44 1 4.1134 -2.1421 -0.0103 45 1 1.6532 -2.1330 -0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150777115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:29 Heat of formation + Delta-G solvation = 25.036662 kcal Electronic energy + Delta-G solvation = -30865.271144 eV Core-core repulsion = 26344.501744 eV Total energy + Delta-G solvation = -4520.769400 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.132 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.61529 -46.00836 -40.87408 -40.30374 -38.39718 -36.61250 -35.80961 -34.27652 -33.45457 -32.76752 -31.99049 -30.90281 -29.74170 -28.12267 -27.33366 -26.78777 -24.72125 -23.84792 -23.40234 -22.75373 -22.58009 -21.10362 -20.00130 -19.45034 -18.74862 -18.65070 -17.58146 -17.26896 -17.11736 -16.91768 -16.45345 -16.33112 -16.15911 -15.94870 -15.62199 -15.54325 -15.21037 -15.11200 -14.99799 -14.70443 -14.62612 -14.41868 -14.18033 -13.81179 -13.63640 -13.44490 -13.35677 -13.17412 -13.07325 -12.96985 -12.62457 -12.35469 -12.29455 -12.20371 -12.03368 -11.89368 -11.63909 -11.51378 -10.80451 -10.75601 -10.67652 -9.98515 -9.41056 -9.37726 -8.47141 -8.06260 -6.09552 -0.24068 0.36075 0.38072 0.51215 0.64168 1.34252 1.39836 1.41549 1.49892 1.95856 2.15490 2.68060 2.79226 2.80471 2.93206 3.11586 3.24349 3.36832 3.67656 3.83180 3.92578 3.93486 4.02049 4.04278 4.09555 4.22330 4.29315 4.41565 4.46004 4.53367 4.54175 4.67940 4.77036 4.77763 4.79909 4.85129 4.92285 5.04572 5.07305 5.12537 5.23501 5.34689 5.37674 5.46474 5.46993 5.49599 5.59191 5.94929 5.95309 6.04814 6.48119 6.67611 6.99052 7.11620 7.76165 8.74495 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.002218 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.774817 B =12621.543556 C =14885.660385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 C -0.127 4.127 4 C -0.107 4.107 5 C -0.054 4.054 6 C 0.046 3.954 7 C -0.197 4.197 8 C -0.039 4.039 9 C 0.214 3.786 10 N -0.749 5.749 11 C 0.154 3.846 12 C -0.128 4.128 13 C -0.163 4.163 14 C 0.067 3.933 15 F -0.156 7.156 16 C -0.248 4.248 17 C 0.081 3.919 18 O -0.217 6.217 19 C -0.406 4.406 20 H 0.094 0.906 21 C -0.016 4.016 22 N -0.914 5.914 23 Si 1.009 2.991 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.258 1.258 27 O 0.096 5.904 28 N -0.383 5.383 29 C -0.093 4.093 30 C -0.123 4.123 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.116 0.884 36 H 0.202 0.798 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.396 0.604 40 H 0.174 0.826 41 H 0.160 0.840 42 H 0.120 0.880 43 H 0.270 0.730 44 H 0.144 0.856 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 -1.448 16.984 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C -0.145 4.145 4 C -0.126 4.126 5 C -0.055 4.055 6 C -0.109 4.109 7 C -0.219 4.219 8 C -0.102 4.102 9 C 0.090 3.910 10 N -0.382 5.382 11 C 0.053 3.947 12 C -0.151 4.151 13 C -0.183 4.183 14 C 0.046 3.954 15 F -0.135 7.135 16 C -0.269 4.269 17 C 0.029 3.971 18 O -0.124 6.124 19 C -0.482 4.482 20 H 0.112 0.888 21 C -0.214 4.214 22 N -0.552 5.552 23 Si 0.829 3.171 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.182 1.182 27 O 0.028 5.972 28 N -0.086 5.086 29 C -0.113 4.113 30 C -0.141 4.141 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.219 0.781 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.230 0.770 40 H 0.191 0.809 41 H 0.177 0.823 42 H 0.138 0.862 43 H 0.079 0.921 44 H 0.162 0.838 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.866 0.103 17.059 21.368 hybrid contribution 0.520 -0.497 -1.777 1.917 sum -12.347 -0.394 15.282 19.651 Atomic orbital electron populations 1.20895 0.88677 1.04180 1.03358 1.20476 0.97997 0.92710 0.96669 1.21239 0.92946 0.99284 1.01041 1.21297 0.95295 0.97060 0.98974 1.17902 0.86825 0.95370 1.05425 1.22398 0.95935 0.89446 1.03154 1.22863 0.90234 1.01871 1.06893 1.24614 0.98964 0.83105 1.03563 1.19881 0.88062 0.98724 0.84300 1.44443 1.23600 1.63378 1.06804 1.17300 0.89641 0.98031 0.89778 1.20491 0.94670 1.02020 0.97933 1.20843 0.99168 1.04180 0.94109 1.17391 0.84191 0.99514 0.94314 1.91384 1.47838 1.78641 1.95659 1.20845 0.98281 1.08254 0.99511 1.19101 0.91916 0.97600 0.88519 1.83864 1.42029 1.73024 1.13496 1.21646 1.08899 1.36850 0.80802 0.88837 1.26350 0.96192 0.95485 1.03411 1.70153 1.16593 1.35811 1.32644 0.84715 0.78786 0.78502 0.75096 1.18878 1.19737 1.18190 1.84780 1.21287 1.23948 1.67217 1.74100 0.89698 1.24493 1.20290 1.21379 0.95047 0.96857 0.97969 1.21335 0.93252 0.99112 1.00384 0.90191 0.89906 0.90412 0.83747 0.86596 0.78120 0.88160 0.85677 0.77010 0.80912 0.82266 0.86246 0.92080 0.83818 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.38 16 2 C -0.08 -1.25 5.88 -19.82 -0.12 -1.37 16 3 C -0.13 -2.40 9.68 22.24 0.22 -2.19 16 4 C -0.11 -2.62 9.70 22.48 0.22 -2.40 16 5 C -0.05 -1.39 5.88 -20.04 -0.12 -1.51 16 6 C 0.05 1.34 7.06 43.00 0.30 1.64 16 7 C -0.20 -4.79 10.45 22.58 0.24 -4.55 16 8 C -0.04 -1.00 6.84 24.99 0.17 -0.83 16 9 C 0.21 4.66 5.47 85.63 0.47 5.13 16 10 N -0.75 -24.72 5.72 -342.57 -1.96 -26.68 16 11 C 0.15 5.63 6.67 38.27 0.26 5.88 16 12 C -0.13 -3.55 9.31 22.38 0.21 -3.34 16 13 C -0.16 -4.79 10.02 22.33 0.22 -4.57 16 14 C 0.07 2.50 7.29 22.37 0.16 2.66 16 15 F -0.16 -5.72 17.26 44.97 0.78 -4.94 16 16 C -0.25 -10.96 9.14 22.41 0.20 -10.76 16 17 C 0.08 3.79 6.67 22.69 0.15 3.94 16 18 O -0.22 -12.20 9.00 -22.98 -0.21 -12.41 16 19 C -0.41 -23.09 9.49 67.91 0.64 -22.45 16 20 H 0.09 5.04 5.21 -2.91 -0.02 5.03 16 21 C -0.02 -0.91 5.49 84.82 0.47 -0.45 16 22 N -0.91 -54.71 13.67 21.61 0.30 -54.41 16 23 Si 1.01 43.16 29.55 68.60 2.03 45.18 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 27 O 0.10 2.97 11.18 71.50 0.80 3.77 16 28 N -0.38 -12.43 11.82 -49.45 -0.58 -13.02 16 29 C -0.09 -1.87 9.60 22.48 0.22 -1.66 16 30 C -0.12 -2.01 9.68 22.24 0.22 -1.79 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 34 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.12 2.99 7.89 -2.91 -0.02 2.96 16 36 H 0.20 3.57 7.58 -2.91 -0.02 3.54 16 37 H 0.10 1.81 7.94 -2.39 -0.02 1.79 16 38 H 0.13 1.88 7.96 -2.39 -0.02 1.86 16 39 H 0.40 15.97 7.83 -92.70 -0.73 15.25 16 40 H 0.17 3.10 6.73 -2.91 -0.02 3.08 16 41 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 43 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 44 H 0.14 2.30 7.23 -2.91 -0.02 2.28 16 45 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -73.71 394.67 6.33 -67.39 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.34 Total: 34.12 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 4.84 Total: -39.00 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -2.25 Total: -94.11 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.59 Total: -8.64 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.78 Total: -4.94 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.71 6.33 -67.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150777115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.424 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds