Wall clock time and date at job start Tue Mar 31 2020 07:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76203 * 102.99991 * 2 1 4 4 C 1.38970 * 120.08126 * 179.97438 * 3 2 1 5 5 C 1.38085 * 119.91792 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.07932 * 0.02562 * 5 4 3 7 7 S 1.76207 * 119.91825 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.39918 * 336.46040 * 7 6 5 9 9 O 1.42098 * 106.40181 * 203.54247 * 7 6 5 10 10 N 1.65597 * 107.21624 * 90.00098 * 7 6 5 11 11 C 1.46506 * 120.00079 * 90.00391 * 10 7 6 12 12 C 1.50701 * 109.46970 * 264.72396 * 11 10 7 13 13 H 1.08005 * 119.99694 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00074 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00171 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47010 * 90.00165 * 16 14 12 18 18 H 1.48496 * 109.47338 * 210.00715 * 16 14 12 19 19 H 1.48504 * 109.46968 * 330.00328 * 16 14 12 20 20 C 1.46499 * 119.99926 * 269.72430 * 10 7 6 21 21 C 1.53001 * 109.47277 * 265.27680 * 20 10 7 22 22 F 1.39897 * 109.47087 * 59.99788 * 21 20 10 23 23 F 1.39898 * 109.47123 * 180.02562 * 21 20 10 24 24 F 1.39904 * 109.46986 * 300.00127 * 21 20 10 25 25 C 1.38307 * 120.16427 * 0.27387 * 6 5 4 26 26 C 1.38082 * 120.07802 * 359.44984 * 25 6 5 27 27 H 1.09000 * 109.47394 * 300.00111 * 1 2 3 28 28 H 1.08996 * 109.47047 * 60.00228 * 1 2 3 29 29 H 1.09004 * 109.47240 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.03948 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.95290 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.46864 * 24.71745 * 11 10 7 33 33 H 1.08999 * 109.46950 * 144.72128 * 11 10 7 34 34 H 0.97000 * 120.00214 * 179.97438 * 15 14 12 35 35 H 1.08991 * 109.47463 * 25.27752 * 20 10 7 36 36 H 1.09000 * 109.46878 * 145.27981 * 20 10 7 37 37 H 1.08005 * 119.95751 * 179.72478 * 25 6 5 38 38 H 1.07998 * 120.04038 * 180.27581 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5388 2.1251 0.0005 5 6 3.8455 3.4714 0.0011 6 6 2.8327 4.4131 0.0016 7 16 3.2291 6.1300 0.0030 8 8 4.5369 6.2394 0.5477 9 8 2.1015 6.8016 0.5478 10 7 3.3395 6.6088 -1.5784 11 6 2.1522 7.1060 -2.2779 12 6 1.5123 5.9780 -3.0456 13 1 1.9469 4.9897 -3.0158 14 6 0.3728 6.2079 -3.7868 15 7 -0.1859 5.2235 -4.4564 16 14 -0.3785 7.9174 -3.8390 17 1 0.2103 8.6826 -4.9673 18 1 -1.8472 7.8071 -4.0286 19 1 -0.0958 8.6215 -2.5624 20 6 4.6259 6.5409 -2.2761 21 6 5.3248 7.8993 -2.1908 22 9 5.5392 8.2299 -0.8485 23 9 6.5529 7.8346 -2.8576 24 9 4.5208 8.8757 -2.7888 25 6 1.5096 4.0106 0.0073 26 6 1.1952 2.6660 0.0010 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.3302 1.3902 0.0005 31 1 4.8777 3.7893 0.0019 32 1 1.4413 7.5004 -1.5518 33 1 2.4425 7.8973 -2.9691 34 1 -0.9879 5.3851 -4.9776 35 1 5.2523 5.7802 -1.8103 36 1 4.4588 6.2834 -3.3220 37 1 0.7213 4.7488 0.0122 38 1 0.1617 2.3524 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190339969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:52 Heat of formation + Delta-G solvation = -193.446462 kcal Electronic energy + Delta-G solvation = -30353.218496 eV Core-core repulsion = 25613.390493 eV Total energy + Delta-G solvation = -4739.828003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 369.047 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.74451 -47.29553 -47.18905 -38.91514 -36.95274 -36.28730 -35.50016 -32.70821 -31.51396 -31.07567 -29.70445 -28.98398 -26.94321 -23.41138 -23.20700 -22.66684 -22.01931 -18.97818 -18.37635 -18.18992 -18.13233 -17.65588 -16.96422 -16.76021 -16.58241 -15.85889 -15.11466 -14.90041 -14.65605 -14.33051 -14.20764 -14.13823 -13.99462 -13.84282 -13.67670 -13.63247 -13.39949 -13.36676 -13.03129 -12.98573 -12.70049 -12.58804 -12.42416 -12.27444 -12.05836 -11.73536 -11.52666 -11.48805 -11.33852 -11.05821 -10.73006 -10.65259 -10.37921 -10.24600 -10.06668 -9.74537 -8.95622 -8.76542 -8.55203 -7.63004 -6.27151 -4.29913 0.59603 0.91999 1.35389 1.42585 2.20573 3.02289 3.13398 3.19341 3.28226 3.32669 3.57888 4.02586 4.17254 4.25923 4.30940 4.44959 4.59119 4.84623 4.88106 4.92133 4.92878 5.02825 5.10358 5.30217 5.46317 5.51476 5.54423 5.66276 5.83413 5.99634 6.06909 6.18366 6.24225 6.67331 6.77962 6.85656 6.95633 7.36168 8.25668 8.74946 9.32213 10.84416 Molecular weight = 369.05amu Principal moments of inertia in cm(-1) A = 0.008995 B = 0.004560 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.992625 B = 6139.084372 C = 8090.368359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.114 6.114 3 C -0.034 4.034 4 C -0.128 4.128 5 C -0.006 4.006 6 C -0.672 4.672 7 S 2.690 3.310 8 O -0.960 6.960 9 O -0.950 6.950 10 N -0.973 5.973 11 C 0.204 3.796 12 C -0.548 4.548 13 H 0.083 0.917 14 C 0.082 3.918 15 N -0.888 5.888 16 Si 0.862 3.138 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.258 1.258 20 C 0.092 3.908 21 C 0.428 3.572 22 F -0.176 7.176 23 F -0.187 7.187 24 F -0.179 7.179 25 C 0.029 3.971 26 C -0.152 4.152 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -6.028 6.928 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.130 5.870 3 C -0.148 4.148 4 C -0.153 4.153 5 C -0.028 4.028 6 C -0.761 4.761 7 S 2.781 3.219 8 O -0.950 6.950 9 O -0.940 6.940 10 N -0.808 5.808 11 C 0.081 3.919 12 C -0.587 4.587 13 H 0.101 0.899 14 C -0.123 4.123 15 N -0.526 5.526 16 Si 0.688 3.312 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.182 1.182 20 C -0.038 4.038 21 C 0.372 3.628 22 F -0.158 7.158 23 F -0.168 7.168 24 F -0.160 7.160 25 C 0.008 3.992 26 C -0.177 4.177 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.393 -6.620 7.529 11.890 hybrid contribution -1.483 1.391 -0.724 2.159 sum 4.909 -5.228 6.805 9.887 Atomic orbital electron populations 1.23739 0.94241 1.07195 1.06410 1.85374 1.07111 1.02961 1.91565 1.22000 0.97017 0.96548 0.99187 1.20736 0.94259 0.96082 1.04207 1.20764 0.98383 0.92102 0.91520 1.30950 1.00898 1.25772 1.18472 1.02022 0.73515 0.73918 0.72445 1.93573 1.38700 1.86433 1.76298 1.93560 1.52520 1.72072 1.75861 1.57324 1.14209 1.78149 1.31157 1.19934 0.81576 0.96369 0.93992 1.21357 1.10853 0.96727 1.29732 0.89873 1.24794 0.96269 0.96728 0.94484 1.69881 1.20748 1.31589 1.30333 0.87047 0.79125 0.85240 0.79788 1.19707 1.20813 1.18235 1.22257 0.85660 0.91345 1.04538 1.21532 0.77210 0.90201 0.73893 1.93235 1.94896 1.93910 1.33737 1.93151 1.45977 1.96719 1.80991 1.93182 1.73084 1.66058 1.83681 1.20832 0.94770 0.96162 0.87428 1.21238 0.98465 0.93161 1.04804 0.89482 0.88984 0.87309 0.84899 0.84123 0.92542 0.93621 0.92361 0.86626 0.84850 0.83558 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.15 101.05 0.92 -0.42 16 2 S -0.11 -1.34 22.56 -107.50 -2.43 -3.77 16 3 C -0.03 -0.49 6.11 -39.04 -0.24 -0.73 16 4 C -0.13 -1.78 9.79 -39.37 -0.39 -2.16 16 5 C -0.01 -0.09 9.51 -39.62 -0.38 -0.47 16 6 C -0.67 -11.36 5.98 -39.54 -0.24 -11.60 16 7 S 2.69 49.34 5.59 -107.50 -0.60 48.74 16 8 O -0.96 -17.46 14.64 -57.17 -0.84 -18.30 16 9 O -0.95 -19.84 15.82 -57.17 -0.90 -20.74 16 10 N -0.97 -18.03 2.67 -115.66 -0.31 -18.33 16 11 C 0.20 4.40 4.32 -5.19 -0.02 4.37 16 12 C -0.55 -13.47 9.94 -34.44 -0.34 -13.82 16 13 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 14 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 15 N -0.89 -24.64 13.96 55.43 0.77 -23.86 16 16 Si 0.86 19.76 27.47 -169.99 -4.67 15.09 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 20 C 0.09 1.40 5.42 -4.04 -0.02 1.37 16 21 C 0.43 6.78 3.29 37.16 0.12 6.90 16 22 F -0.18 -3.04 15.55 2.25 0.04 -3.00 16 23 F -0.19 -2.69 17.32 2.25 0.04 -2.65 16 24 F -0.18 -3.06 15.70 2.25 0.04 -3.03 16 25 C 0.03 0.51 9.51 -39.61 -0.38 0.13 16 26 C -0.15 -2.33 9.36 -39.36 -0.37 -2.70 16 27 H 0.09 0.72 7.75 -51.92 -0.40 0.32 16 28 H 0.09 0.90 7.75 -51.93 -0.40 0.50 16 29 H 0.11 0.76 8.14 -51.92 -0.42 0.33 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.14 1.71 7.61 -52.49 -0.40 1.31 16 32 H 0.06 1.28 5.97 -51.93 -0.31 0.97 16 33 H 0.05 0.97 6.15 -51.93 -0.32 0.65 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.12 1.41 7.61 -51.93 -0.40 1.01 16 36 H 0.13 1.89 8.11 -51.93 -0.42 1.47 16 37 H 0.15 2.56 7.60 -52.48 -0.40 2.16 16 38 H 0.13 1.72 5.88 -52.49 -0.31 1.42 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -30.49 356.89 -8.70 -39.18 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.79 Total: 2.40 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.42 Total: -17.09 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.47 Total: -42.20 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.74 Total: -39.04 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.11 Total: -8.69 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -3.03 Total: 44.97 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.49 -8.70 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190339969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.262 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds