Wall clock time and date at job start Tue Mar 31 2020 07:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36100 * 127.10680 * 2 1 4 4 C 1.50705 * 126.27537 * 0.23986 * 3 2 1 5 5 S 1.81402 * 109.46889 * 90.00199 * 4 3 2 6 6 O 1.42099 * 108.57688 * 294.48388 * 5 4 3 7 7 O 1.42098 * 108.58038 * 65.51243 * 5 4 3 8 8 C 1.81404 * 101.91851 * 179.97438 * 5 4 3 9 9 C 1.53000 * 109.46922 * 180.02562 * 8 5 4 10 10 C 1.50700 * 109.47178 * 180.02562 * 9 8 5 11 11 H 1.08000 * 119.99694 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00222 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00067 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99947 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47203 * 89.99908 * 14 12 10 16 16 H 1.48498 * 109.46865 * 209.99960 * 14 12 10 17 17 H 1.48500 * 109.47109 * 329.99658 * 14 12 10 18 18 N 1.30601 * 107.44218 * 180.25913 * 3 2 1 19 19 N 1.28544 * 110.06464 * 0.02562 * 18 3 2 20 20 C 1.31450 * 109.71897 * 359.97438 * 19 18 3 21 21 C 1.47928 * 126.50862 * 179.97438 * 20 19 18 22 22 C 1.39531 * 120.12696 * 161.77244 * 21 20 19 23 23 C 1.37947 * 119.87197 * 179.81176 * 22 21 20 24 24 C 1.38466 * 120.12660 * 0.44359 * 23 22 21 25 25 Cl 1.73601 * 119.87252 * 179.76291 * 24 23 22 26 26 C 1.38474 * 120.25478 * 359.78978 * 24 23 22 27 27 C 1.37939 * 120.12661 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47388 * 263.90730 * 1 2 3 29 29 H 1.08999 * 109.47085 * 23.90697 * 1 2 3 30 30 H 1.08998 * 109.47530 * 143.90729 * 1 2 3 31 31 H 1.09001 * 109.47002 * 209.99937 * 4 3 2 32 32 H 1.08996 * 109.47042 * 330.00382 * 4 3 2 33 33 H 1.08993 * 109.47151 * 300.00058 * 8 5 4 34 34 H 1.09005 * 109.47137 * 60.00048 * 8 5 4 35 35 H 1.09001 * 109.47026 * 299.99899 * 9 8 5 36 36 H 1.08994 * 109.47624 * 59.99915 * 9 8 5 37 37 H 0.97002 * 120.00188 * 179.97438 * 13 12 10 38 38 H 1.07997 * 120.06369 * 0.03091 * 22 21 20 39 39 H 1.08004 * 119.93662 * 180.18968 * 23 22 21 40 40 H 1.08001 * 119.93739 * 179.97438 * 26 24 23 41 41 H 1.07995 * 120.06931 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2861 1.0854 0.0000 4 6 1.8551 2.5295 0.0051 5 16 1.6880 3.1046 1.7174 6 8 0.6228 2.3927 2.3321 7 8 2.9720 3.0938 2.3260 8 6 1.1737 4.8286 1.4851 9 6 0.9802 5.4914 2.8505 10 6 0.5523 6.9235 2.6575 11 1 0.4309 7.3211 1.6608 12 6 0.3158 7.7259 3.7535 13 7 -0.0572 8.9757 3.5851 14 14 0.5250 7.0378 5.4775 15 1 1.9222 7.2554 5.9311 16 1 -0.4091 7.7283 6.4027 17 1 0.2281 5.5828 5.4691 18 7 3.5159 0.6459 -0.0056 19 7 3.5249 -0.6395 -0.0097 20 6 2.2906 -1.0916 -0.0063 21 6 1.8732 -2.5108 -0.0097 22 6 0.5775 -2.8606 0.3718 23 6 0.1926 -4.1852 0.3630 24 6 1.0922 -5.1678 -0.0147 25 17 0.6027 -6.8334 -0.0174 26 6 2.3809 -4.8270 -0.3896 27 6 2.7754 -3.5053 -0.3893 28 1 -0.3634 -0.1091 1.0218 29 1 -0.3633 0.9395 -0.4165 30 1 -0.3634 -0.8304 -0.6054 31 1 2.6023 3.1335 -0.5097 32 1 0.8967 2.6244 -0.5052 33 1 1.9411 5.3646 0.9269 34 1 0.2353 4.8563 0.9311 35 1 0.2128 4.9554 3.4091 36 1 1.9186 5.4637 3.4041 37 1 -0.2239 9.5402 4.3561 38 1 -0.1239 -2.0954 0.6700 39 1 -0.8111 -4.4569 0.6552 40 1 3.0785 -5.5976 -0.6828 41 1 3.7808 -3.2406 -0.6815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190950993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:26 Heat of formation + Delta-G solvation = 31.253799 kcal Electronic energy + Delta-G solvation = -27606.831480 eV Core-core repulsion = 23448.852997 eV Total energy + Delta-G solvation = -4157.978484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 369.070 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.41784 -39.75652 -37.04095 -36.82575 -35.86402 -35.60227 -34.04843 -33.59605 -31.76818 -31.59679 -31.17312 -28.37561 -27.87349 -26.05386 -24.12387 -23.41991 -21.77949 -21.42195 -20.92519 -18.80852 -18.01995 -17.59706 -17.36586 -16.91229 -16.50216 -16.16699 -15.88004 -15.81238 -15.47464 -14.80968 -14.51227 -14.35396 -14.19222 -14.08268 -13.90828 -13.83692 -13.55445 -13.13223 -12.87037 -12.39702 -12.24056 -12.10194 -11.99260 -11.93110 -11.88298 -11.81976 -11.38827 -11.35999 -11.32495 -11.28005 -10.74615 -10.59860 -10.50735 -10.23192 -10.00711 -9.70517 -9.68828 -9.42505 -8.71917 -8.71390 -6.22079 -4.24227 -0.12533 0.16759 0.67548 1.52832 1.55565 1.86835 2.46186 2.83095 3.11436 3.23925 3.31269 3.35455 3.36886 3.62875 3.88660 3.97950 4.05524 4.19179 4.24691 4.31514 4.48368 4.52552 4.62413 4.67309 4.91265 4.94081 5.00975 5.07453 5.09989 5.28180 5.33967 5.35558 5.37908 5.43754 5.59696 5.69302 5.83572 6.07271 6.14738 6.31206 6.74663 6.87159 7.47674 8.29103 8.29353 8.77899 9.37232 10.89957 Molecular weight = 369.07amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.001866 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.074967 B =14999.316823 C =15560.051136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.463 5.463 3 C 0.189 3.811 4 C -0.543 4.543 5 S 2.392 3.608 6 O -0.938 6.938 7 O -0.920 6.920 8 C -0.558 4.558 9 C -0.007 4.007 10 C -0.523 4.523 11 H 0.079 0.921 12 C 0.073 3.927 13 N -0.894 5.894 14 Si 0.868 3.132 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.262 1.262 18 N -0.260 5.260 19 N -0.267 5.267 20 C 0.215 3.785 21 C -0.008 4.008 22 C -0.102 4.102 23 C -0.105 4.105 24 C -0.024 4.024 25 Cl -0.064 7.064 26 C -0.107 4.107 27 C -0.061 4.061 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -27.739 -12.219 30.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.154 5.154 3 C -0.077 4.077 4 C -0.668 4.668 5 S 2.574 3.426 6 O -0.935 6.935 7 O -0.917 6.917 8 C -0.691 4.691 9 C -0.046 4.046 10 C -0.562 4.562 11 H 0.097 0.903 12 C -0.130 4.130 13 N -0.531 5.531 14 Si 0.695 3.305 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.186 1.186 18 N -0.102 5.102 19 N -0.109 5.109 20 C -0.049 4.049 21 C -0.011 4.011 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.052 4.052 25 Cl -0.035 7.035 26 C -0.125 4.125 27 C -0.082 4.082 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.186 0.814 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.140 -28.197 -11.402 30.416 hybrid contribution -1.581 0.182 0.058 1.592 sum -1.720 -28.015 -11.345 30.274 Atomic orbital electron populations 1.22592 0.74704 1.05926 1.05691 1.46252 1.09244 1.05763 1.54134 1.23397 0.87554 0.89766 1.06957 1.29215 1.11783 0.95321 1.30476 1.09274 0.76308 0.80317 0.76724 1.93537 1.56339 1.72246 1.71389 1.93603 1.40339 1.86673 1.71093 1.30046 1.11708 1.16871 1.10474 1.19455 0.98312 0.98441 0.88348 1.20822 1.47366 0.92542 0.95427 0.90291 1.24963 0.94098 0.94663 0.99250 1.69870 1.45890 1.06259 1.31110 0.86937 0.78939 0.80163 0.84507 1.19566 1.20742 1.18591 1.74331 1.16103 1.02959 1.16825 1.74582 1.16072 1.02716 1.17556 1.22741 0.87208 0.88972 1.05951 1.17519 0.94492 0.86816 1.02271 1.21448 0.95206 0.96645 0.98854 1.20961 1.00049 0.91254 1.00133 1.21146 0.95197 0.85896 1.02923 1.98395 1.91632 1.16566 1.96938 1.21057 0.94602 0.96746 1.00118 1.21198 0.99953 0.90702 0.96299 0.87950 0.88153 0.88224 0.81389 0.83313 0.84994 0.85270 0.94658 0.94971 0.92291 0.84162 0.84022 0.83922 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 9.29 59.85 0.56 0.92 16 2 N -0.46 -5.27 3.20 -118.25 -0.38 -5.65 16 3 C 0.19 2.57 7.31 -154.36 -1.13 1.44 16 4 C -0.54 -5.69 6.16 36.01 0.22 -5.47 16 5 S 2.39 36.43 4.70 -107.50 -0.51 35.92 16 6 O -0.94 -15.92 18.10 -57.83 -1.05 -16.97 16 7 O -0.92 -17.85 18.10 -57.83 -1.05 -18.90 16 8 C -0.56 -8.89 5.74 37.16 0.21 -8.68 16 9 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 10 C -0.52 -13.96 9.66 -34.44 -0.33 -14.30 16 11 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 13 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 14 Si 0.87 21.01 27.47 -169.99 -4.67 16.34 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 18 N -0.26 -4.26 12.19 32.92 0.40 -3.86 16 19 N -0.27 -4.10 12.03 32.51 0.39 -3.71 16 20 C 0.21 2.65 7.69 -154.24 -1.19 1.46 16 21 C -0.01 -0.08 5.87 -104.96 -0.62 -0.69 16 22 C -0.10 -0.72 8.73 -39.21 -0.34 -1.06 16 23 C -0.11 -0.66 9.81 -39.60 -0.39 -1.05 16 24 C -0.02 -0.16 6.32 -39.41 -0.25 -0.41 16 25 Cl -0.06 -0.42 28.95 -51.86 -1.50 -1.92 16 26 C -0.11 -0.71 9.81 -39.60 -0.39 -1.10 16 27 C -0.06 -0.50 9.70 -39.21 -0.38 -0.88 16 28 H 0.10 0.67 7.76 -51.93 -0.40 0.27 16 29 H 0.10 0.48 7.06 -51.93 -0.37 0.12 16 30 H 0.10 0.40 6.51 -51.93 -0.34 0.06 16 31 H 0.17 1.38 8.14 -51.92 -0.42 0.96 16 32 H 0.15 0.89 7.14 -51.93 -0.37 0.52 16 33 H 0.13 1.83 8.14 -51.93 -0.42 1.40 16 34 H 0.13 1.69 8.14 -51.92 -0.42 1.26 16 35 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 36 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.14 0.75 4.93 -52.49 -0.26 0.49 16 39 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.15 1.15 7.97 -52.49 -0.42 0.73 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -38.21 378.04 -10.74 -48.95 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.62 Total: -2.27 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -4.23 Total: -28.12 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 1.19 Total: -38.74 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -2.09 Total: -35.86 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Atomic # 16 Polarization: 36.43 SS G_CDS: -0.51 Total: 35.92 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.21 -10.74 -48.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190950993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.201 kcal (2) G-P(sol) polarization free energy of solvation -38.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds