Wall clock time and date at job start Tue Mar 31 2020 07:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36100 * 127.10680 * 2 1 4 4 C 1.50705 * 126.27537 * 0.23986 * 3 2 1 5 5 S 1.81402 * 109.46889 * 90.00199 * 4 3 2 6 6 O 1.42099 * 108.57688 * 294.48388 * 5 4 3 7 7 O 1.42098 * 108.58038 * 65.51243 * 5 4 3 8 8 C 1.81404 * 101.91851 * 179.97438 * 5 4 3 9 9 C 1.53000 * 109.46922 * 180.02562 * 8 5 4 10 10 C 1.50700 * 109.47178 * 180.02562 * 9 8 5 11 11 H 1.08000 * 119.99694 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00222 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00067 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99947 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47203 * 89.99908 * 14 12 10 16 16 H 1.48498 * 109.46865 * 209.99960 * 14 12 10 17 17 H 1.48500 * 109.47109 * 329.99658 * 14 12 10 18 18 N 1.30601 * 107.44218 * 180.25913 * 3 2 1 19 19 N 1.28544 * 110.06464 * 0.02562 * 18 3 2 20 20 C 1.31450 * 109.71897 * 359.97438 * 19 18 3 21 21 C 1.47928 * 126.50862 * 179.97438 * 20 19 18 22 22 C 1.39531 * 120.12696 * 161.77244 * 21 20 19 23 23 C 1.37947 * 119.87197 * 179.81176 * 22 21 20 24 24 C 1.38466 * 120.12660 * 0.44359 * 23 22 21 25 25 Cl 1.73601 * 119.87252 * 179.76291 * 24 23 22 26 26 C 1.38474 * 120.25478 * 359.78978 * 24 23 22 27 27 C 1.37939 * 120.12661 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47388 * 263.90730 * 1 2 3 29 29 H 1.08999 * 109.47085 * 23.90697 * 1 2 3 30 30 H 1.08998 * 109.47530 * 143.90729 * 1 2 3 31 31 H 1.09001 * 109.47002 * 209.99937 * 4 3 2 32 32 H 1.08996 * 109.47042 * 330.00382 * 4 3 2 33 33 H 1.08993 * 109.47151 * 300.00058 * 8 5 4 34 34 H 1.09005 * 109.47137 * 60.00048 * 8 5 4 35 35 H 1.09001 * 109.47026 * 299.99899 * 9 8 5 36 36 H 1.08994 * 109.47624 * 59.99915 * 9 8 5 37 37 H 0.97002 * 120.00188 * 179.97438 * 13 12 10 38 38 H 1.07997 * 120.06369 * 0.03091 * 22 21 20 39 39 H 1.08004 * 119.93662 * 180.18968 * 23 22 21 40 40 H 1.08001 * 119.93739 * 179.97438 * 26 24 23 41 41 H 1.07995 * 120.06931 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2861 1.0854 0.0000 4 6 1.8551 2.5295 0.0051 5 16 1.6880 3.1046 1.7174 6 8 0.6228 2.3927 2.3321 7 8 2.9720 3.0938 2.3260 8 6 1.1737 4.8286 1.4851 9 6 0.9802 5.4914 2.8505 10 6 0.5523 6.9235 2.6575 11 1 0.4309 7.3211 1.6608 12 6 0.3158 7.7259 3.7535 13 7 -0.0572 8.9757 3.5851 14 14 0.5250 7.0378 5.4775 15 1 1.9222 7.2554 5.9311 16 1 -0.4091 7.7283 6.4027 17 1 0.2281 5.5828 5.4691 18 7 3.5159 0.6459 -0.0056 19 7 3.5249 -0.6395 -0.0097 20 6 2.2906 -1.0916 -0.0063 21 6 1.8732 -2.5108 -0.0097 22 6 0.5775 -2.8606 0.3718 23 6 0.1926 -4.1852 0.3630 24 6 1.0922 -5.1678 -0.0147 25 17 0.6027 -6.8334 -0.0174 26 6 2.3809 -4.8270 -0.3896 27 6 2.7754 -3.5053 -0.3893 28 1 -0.3634 -0.1091 1.0218 29 1 -0.3633 0.9395 -0.4165 30 1 -0.3634 -0.8304 -0.6054 31 1 2.6023 3.1335 -0.5097 32 1 0.8967 2.6244 -0.5052 33 1 1.9411 5.3646 0.9269 34 1 0.2353 4.8563 0.9311 35 1 0.2128 4.9554 3.4091 36 1 1.9186 5.4637 3.4041 37 1 -0.2239 9.5402 4.3561 38 1 -0.1239 -2.0954 0.6700 39 1 -0.8111 -4.4569 0.6552 40 1 3.0785 -5.5976 -0.6828 41 1 3.7808 -3.2406 -0.6815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190950993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:25 Heat of formation + Delta-G solvation = 4.972051 kcal Electronic energy + Delta-G solvation = -27607.971143 eV Core-core repulsion = 23448.852997 eV Total energy + Delta-G solvation = -4159.118146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 369.070 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.32452 -40.31460 -38.10569 -37.56791 -37.14749 -36.41687 -35.86310 -34.42140 -33.46203 -32.31413 -31.86848 -29.16488 -28.66586 -27.76767 -24.83297 -24.02148 -23.23963 -22.15263 -22.09693 -20.02605 -19.26437 -18.67459 -18.16012 -18.01702 -17.34689 -17.12932 -17.03400 -16.86881 -16.34292 -16.24089 -15.57314 -15.33248 -15.12920 -14.81130 -14.78759 -14.62326 -14.50242 -14.27135 -13.79854 -13.71812 -13.21536 -13.13845 -13.05454 -12.99206 -12.91543 -12.88548 -12.80223 -12.62298 -12.41418 -12.20401 -11.93389 -11.90908 -11.67620 -11.62143 -11.38533 -11.21953 -10.82783 -10.72248 -10.20793 -9.47746 -8.35016 -6.39633 -1.26507 -0.51712 0.15899 0.71085 1.02296 1.10750 1.31969 1.34973 1.43671 1.53568 1.71300 2.30202 2.38811 2.51436 2.84068 2.94513 2.99865 3.02331 3.46739 3.51186 3.73624 3.75607 3.92979 3.93707 4.09614 4.12065 4.19620 4.27487 4.33816 4.45324 4.49931 4.63328 4.64957 4.71848 4.85588 4.98071 5.07852 5.11586 5.15785 5.24330 5.49654 5.52011 5.57238 6.18330 6.67342 7.24916 7.33562 8.80010 Molecular weight = 369.07amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.001866 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.074967 B =14999.316823 C =15560.051136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.460 5.460 3 C 0.173 3.827 4 C -0.516 4.516 5 S 2.402 3.598 6 O -0.961 6.961 7 O -0.973 6.973 8 C -0.563 4.563 9 C -0.020 4.020 10 C -0.524 4.524 11 H 0.058 0.942 12 C 0.016 3.984 13 N -0.938 5.938 14 Si 0.919 3.081 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.251 1.251 18 N -0.304 5.304 19 N -0.310 5.310 20 C 0.223 3.777 21 C -0.032 4.032 22 C -0.095 4.095 23 C -0.102 4.102 24 C -0.026 4.026 25 Cl -0.060 7.060 26 C -0.106 4.106 27 C -0.068 4.068 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.195 0.805 32 H 0.204 0.796 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.034 0.966 36 H 0.024 0.976 37 H 0.269 0.731 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 -30.017 -13.322 33.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.150 5.150 3 C -0.094 4.094 4 C -0.645 4.645 5 S 2.588 3.412 6 O -0.958 6.958 7 O -0.970 6.970 8 C -0.695 4.695 9 C -0.059 4.059 10 C -0.563 4.563 11 H 0.077 0.923 12 C -0.183 4.183 13 N -0.578 5.578 14 Si 0.742 3.258 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.174 1.174 18 N -0.146 5.146 19 N -0.152 5.152 20 C -0.042 4.042 21 C -0.035 4.035 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.054 4.054 25 Cl -0.031 7.031 26 C -0.124 4.124 27 C -0.088 4.088 28 H 0.123 0.877 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.213 0.787 32 H 0.221 0.779 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.845 -30.455 -12.450 32.953 hybrid contribution -1.102 0.717 0.260 1.340 sum -2.947 -29.738 -12.190 32.275 Atomic orbital electron populations 1.23113 0.72072 1.08749 1.06810 1.46503 1.10699 1.04723 1.53036 1.23744 0.87453 0.91150 1.07098 1.28991 1.15810 0.93875 1.25841 1.08570 0.74726 0.79420 0.78472 1.93501 1.56609 1.72097 1.73592 1.93546 1.42304 1.87039 1.74130 1.29983 1.14377 1.17808 1.07294 1.19394 0.97617 0.96536 0.92309 1.21204 1.45886 0.94744 0.94432 0.92330 1.25790 0.94337 0.94996 1.03180 1.69990 1.47943 1.07631 1.32204 0.86117 0.79132 0.80147 0.80375 1.19159 1.19972 1.17433 1.74206 1.18277 1.03749 1.18381 1.74471 1.18143 1.02692 1.19867 1.23226 0.86753 0.90345 1.03870 1.17661 0.95869 0.85503 1.04456 1.21636 0.94443 0.97515 0.97884 1.21229 1.00955 0.90664 0.99234 1.21320 0.95339 0.86287 1.02416 1.98402 1.91549 1.16282 1.96869 1.21208 0.95072 0.96464 0.99670 1.21234 0.99771 0.91228 0.96537 0.87665 0.85591 0.85379 0.78710 0.77881 0.83038 0.82037 0.94793 0.95756 0.92200 0.82330 0.81722 0.82294 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.29 127.77 1.19 1.51 16 2 N -0.46 -9.41 3.20 -528.03 -1.69 -11.11 16 3 C 0.17 4.36 7.31 137.76 1.01 5.37 16 4 C -0.52 -8.98 6.16 71.24 0.44 -8.55 16 5 S 2.40 68.86 4.70 -56.49 -0.27 68.59 16 6 O -0.96 -30.89 18.10 -127.37 -2.31 -33.19 16 7 O -0.97 -37.78 18.10 -127.37 -2.30 -40.09 16 8 C -0.56 -16.74 5.74 71.98 0.41 -16.32 16 9 C -0.02 -0.88 4.05 29.85 0.12 -0.76 16 10 C -0.52 -28.08 9.66 25.60 0.25 -27.83 16 11 H 0.06 3.29 7.99 -2.91 -0.02 3.26 16 12 C 0.02 0.89 5.47 84.65 0.46 1.35 16 13 N -0.94 -56.17 13.96 21.45 0.30 -55.87 16 14 Si 0.92 43.28 27.47 68.60 1.88 45.17 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 18 N -0.30 -9.91 12.19 -49.76 -0.61 -10.52 16 19 N -0.31 -9.64 12.03 -51.06 -0.61 -10.25 16 20 C 0.22 5.31 7.69 136.41 1.05 6.36 16 21 C -0.03 -0.56 5.87 -20.09 -0.12 -0.67 16 22 C -0.10 -1.10 8.73 22.51 0.20 -0.90 16 23 C -0.10 -0.98 9.81 22.26 0.22 -0.76 16 24 C -0.03 -0.30 6.32 22.38 0.14 -0.15 16 25 Cl -0.06 -0.65 28.95 -2.72 -0.08 -0.73 16 26 C -0.11 -1.24 9.81 22.26 0.22 -1.02 16 27 C -0.07 -1.05 9.70 22.51 0.22 -0.83 16 28 H 0.11 1.03 7.76 -2.39 -0.02 1.01 16 29 H 0.13 0.58 7.06 -2.39 -0.02 0.56 16 30 H 0.13 0.50 6.51 -2.39 -0.02 0.49 16 31 H 0.20 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.20 1.24 7.14 -2.39 -0.02 1.22 16 33 H 0.15 3.86 8.14 -2.39 -0.02 3.84 16 34 H 0.16 3.66 8.14 -2.39 -0.02 3.64 16 35 H 0.03 1.49 7.20 -2.39 -0.02 1.48 16 36 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.16 1.16 4.93 -2.91 -0.01 1.15 16 39 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.14 2.29 7.97 -2.91 -0.02 2.26 16 Total: -1.00 -87.56 378.04 1.14 -86.42 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.02 Total: 4.81 kcal Atomic # 6 Polarization: -49.02 SS G_CDS: 5.80 Total: -43.22 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -2.61 Total: -87.75 kcal Atomic # 8 Polarization: -68.67 SS G_CDS: -4.61 Total: -73.28 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.17 kcal Atomic # 16 Polarization: 68.86 SS G_CDS: -0.27 Total: 68.59 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -87.56 1.14 -86.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190950993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.387 kcal (2) G-P(sol) polarization free energy of solvation -87.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds