Wall clock time and date at job start Tue Mar 31 2020 06:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38280 * 119.92816 * 2 1 4 4 C 1.38112 * 120.07081 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.03562 * 180.02562 * 4 3 2 6 6 C 1.38868 * 119.92589 * 0.02562 * 4 3 2 7 7 N 1.39931 * 120.06842 * 180.02562 * 6 4 3 8 8 C 1.46766 * 124.34858 * 89.99912 * 7 6 4 9 9 C 1.54480 * 105.47504 * 162.96062 * 8 7 6 10 10 C 1.54631 * 101.76379 * 25.41563 * 9 8 7 11 11 H 1.08997 * 110.48613 * 216.52254 * 10 9 8 12 12 N 1.46499 * 110.48598 * 93.87973 * 10 9 8 13 13 C 1.39987 * 120.00029 * 158.77565 * 12 10 9 14 14 C 1.40426 * 125.97532 * 359.71480 * 13 12 10 15 15 C 1.35250 * 107.86275 * 179.83406 * 14 13 12 16 16 N 1.34956 * 107.86154 * 0.42169 * 15 14 13 17 17 C 1.46502 * 125.96973 * 179.72835 * 16 15 14 18 18 C 1.50701 * 109.46812 * 124.98130 * 17 16 15 19 19 H 1.07994 * 120.00093 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99941 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99848 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47062 * 89.99967 * 22 20 18 24 24 H 1.48492 * 109.47485 * 210.00348 * 22 20 18 25 25 H 1.48509 * 109.46950 * 330.00407 * 22 20 18 26 26 N 1.31229 * 125.97577 * 180.02562 * 13 12 10 27 27 C 1.34417 * 124.35339 * 269.97356 * 7 6 4 28 28 O 1.21294 * 124.93699 * 0.45229 * 27 7 6 29 29 C 1.38870 * 119.86362 * 0.27350 * 6 4 3 30 30 C 1.50701 * 120.03840 * 179.70794 * 29 6 4 31 31 C 1.38115 * 119.92562 * 359.42846 * 29 6 4 32 32 H 1.08992 * 109.47599 * 89.99675 * 1 2 3 33 33 H 1.08998 * 109.47073 * 210.00092 * 1 2 3 34 34 H 1.09004 * 109.47109 * 329.99786 * 1 2 3 35 35 H 1.08003 * 119.96766 * 359.97438 * 3 2 1 36 36 H 1.08998 * 109.47353 * 269.97787 * 5 4 3 37 37 H 1.09002 * 109.47252 * 29.98243 * 5 4 3 38 38 H 1.09002 * 109.47141 * 149.97747 * 5 4 3 39 39 H 1.09000 * 110.24445 * 281.96284 * 8 7 6 40 40 H 1.08996 * 110.24758 * 43.96015 * 8 7 6 41 41 H 1.08998 * 110.96675 * 143.53087 * 9 8 7 42 42 H 1.08998 * 110.96857 * 267.29572 * 9 8 7 43 43 H 0.97002 * 120.00191 * 338.77062 * 12 10 9 44 44 H 1.08000 * 126.07084 * 359.96213 * 14 13 12 45 45 H 1.07995 * 126.07100 * 180.13757 * 15 14 13 46 46 H 1.09010 * 109.47306 * 244.97743 * 17 16 15 47 47 H 1.08994 * 109.47397 * 4.97831 * 17 16 15 48 48 H 0.96998 * 119.99655 * 179.97438 * 21 20 18 49 49 H 1.09009 * 109.46924 * 90.00022 * 30 29 6 50 50 H 1.09001 * 109.46892 * 209.99817 * 30 29 6 51 51 H 1.08992 * 109.46948 * 329.99908 * 30 29 6 52 52 H 1.07997 * 119.96809 * 180.29973 * 31 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.3291 2.5083 0.0011 6 6 4.2738 0.0000 0.0005 7 7 5.6732 0.0000 0.0016 8 6 6.5003 -0.0005 1.2140 9 6 7.9084 -0.4365 0.7520 10 6 7.8986 -0.0106 -0.7344 11 1 8.4417 -0.7343 -1.3422 12 7 8.4765 1.3267 -0.8885 13 6 8.9760 1.7345 -2.1310 14 6 8.9917 0.9660 -3.3062 15 6 9.5500 1.7150 -4.2843 16 7 9.8852 2.9087 -3.7512 17 6 10.5233 4.0197 -4.4616 18 6 9.6866 5.2632 -4.3042 19 1 8.7715 5.2294 -3.7318 20 6 10.0901 6.4443 -4.8900 21 7 11.2054 6.4858 -5.5858 22 14 9.0528 7.9856 -4.6955 23 1 9.4889 8.7262 -3.4844 24 1 9.2208 8.8496 -5.8914 25 1 7.6238 7.6061 -4.5558 26 7 9.5165 2.8997 -2.3999 27 6 6.4325 0.0000 -1.1075 28 8 6.0045 0.0079 -2.2424 29 6 3.5781 -1.2018 -0.0058 30 6 4.3292 -2.5083 -0.0124 31 6 2.1970 -1.1984 0.0000 32 1 -0.3634 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6552 2.1328 -0.0004 36 1 4.5109 2.8234 -1.0264 37 1 3.7383 3.2668 0.5146 38 1 5.2814 2.3797 0.5156 39 1 6.5378 0.9998 1.6454 40 1 6.1048 -0.7106 1.9401 41 1 8.6825 0.0955 1.3051 42 1 8.0339 -1.5150 0.8480 43 1 8.5131 1.9296 -0.1295 44 1 8.6216 -0.0432 -3.4111 45 1 9.7048 1.4102 -5.3087 46 1 11.5158 4.1946 -4.0461 47 1 10.6107 3.7721 -5.5195 48 1 11.4891 7.3167 -5.9982 49 1 4.5102 -2.8285 1.0137 50 1 3.7387 -3.2641 -0.5302 51 1 5.2818 -2.3770 -0.5255 52 1 1.6552 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190976437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:22 Heat of formation + Delta-G solvation = 57.483628 kcal Electronic energy + Delta-G solvation = -33328.524051 eV Core-core repulsion = 29100.747808 eV Total energy + Delta-G solvation = -4227.776243 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.195 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.24477 -41.67785 -40.15568 -37.67290 -36.65135 -35.46199 -34.60915 -34.27997 -32.67745 -31.32612 -30.61513 -28.93732 -28.50707 -27.80222 -27.69751 -26.95743 -24.83833 -23.08914 -22.50322 -21.89870 -21.55592 -21.20202 -20.38879 -18.67038 -18.48496 -18.22387 -17.61951 -17.17714 -16.81971 -16.27538 -16.07511 -15.84345 -15.68690 -15.33823 -15.11360 -14.97781 -14.67195 -14.55588 -14.47903 -14.23332 -14.16118 -14.00589 -13.97207 -13.69240 -13.64648 -13.60899 -13.54629 -13.34968 -12.95851 -12.73078 -12.69350 -12.48401 -12.39516 -12.28790 -12.20823 -12.14354 -12.03471 -11.92580 -11.55904 -11.20992 -10.80030 -10.66204 -9.89522 -9.58454 -9.53951 -9.40208 -8.61414 -8.29441 -6.47328 0.19109 0.33959 1.19979 1.32317 1.34983 1.37019 1.47540 1.86934 1.94471 2.25285 2.32801 2.58302 2.82015 2.97105 3.41980 3.49534 3.75048 3.78100 3.87483 3.90619 4.01039 4.15694 4.27996 4.32764 4.36063 4.41785 4.48020 4.52169 4.55714 4.65536 4.65998 4.71733 4.76831 4.83306 4.84223 4.89486 4.91103 4.94483 5.01088 5.03871 5.05826 5.10881 5.17022 5.27424 5.39619 5.52660 5.54795 5.56775 5.61337 5.67987 5.83987 5.98142 6.10841 6.26662 6.36385 6.65308 6.73523 7.17100 7.22383 7.31818 8.73829 Molecular weight = 368.20amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.002400 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.619642 B =11665.218848 C =13224.992994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.107 4.107 6 C 0.110 3.890 7 N -0.565 5.565 8 C 0.097 3.903 9 C -0.120 4.120 10 C 0.144 3.856 11 H 0.114 0.886 12 N -0.695 5.695 13 C 0.310 3.690 14 C -0.314 4.314 15 C 0.060 3.940 16 N -0.355 5.355 17 C 0.276 3.724 18 C -0.545 4.545 19 H 0.046 0.954 20 C 0.018 3.982 21 N -0.920 5.920 22 Si 0.970 3.030 23 H -0.270 1.270 24 H -0.269 1.269 25 H -0.277 1.277 26 N -0.379 5.379 27 C 0.496 3.504 28 O -0.561 6.561 29 C -0.080 4.080 30 C -0.106 4.106 31 C -0.127 4.127 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.409 0.591 44 H 0.151 0.849 45 H 0.192 0.808 46 H 0.019 0.981 47 H 0.053 0.947 48 H 0.273 0.727 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.050 0.950 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.818 -20.831 19.140 32.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.078 4.078 3 C -0.153 4.153 4 C -0.090 4.090 5 C -0.164 4.164 6 C 0.021 3.979 7 N -0.296 5.296 8 C -0.023 4.023 9 C -0.158 4.158 10 C 0.034 3.966 11 H 0.132 0.868 12 N -0.339 5.339 13 C 0.053 3.947 14 C -0.347 4.347 15 C -0.089 4.089 16 N -0.136 5.136 17 C 0.157 3.843 18 C -0.583 4.583 19 H 0.064 0.936 20 C -0.182 4.182 21 N -0.559 5.559 22 Si 0.794 3.206 23 H -0.196 1.196 24 H -0.193 1.193 25 H -0.202 1.202 26 N -0.211 5.211 27 C 0.283 3.717 28 O -0.437 6.437 29 C -0.082 4.082 30 C -0.162 4.162 31 C -0.145 4.145 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.246 0.754 44 H 0.168 0.832 45 H 0.209 0.791 46 H 0.037 0.963 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.113 0.887 50 H 0.096 0.904 51 H 0.069 0.931 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.579 -19.610 18.724 31.780 hybrid contribution -0.475 0.807 -0.694 1.166 sum -17.054 -18.803 18.030 31.136 Atomic orbital electron populations 1.20848 0.88863 1.04076 1.03056 1.20306 0.97761 0.92529 0.97239 1.21037 0.92465 0.99029 1.02730 1.20299 0.94730 0.94872 0.99087 1.20666 1.00341 0.94338 1.01026 1.17303 0.82103 0.92602 1.05910 1.45570 1.03087 1.72622 1.08317 1.22494 0.90044 1.03595 0.86186 1.23013 0.96763 1.05385 0.90607 1.21512 0.88476 0.85522 1.01094 0.86800 1.43140 1.67981 1.16024 1.06772 1.19474 0.95337 0.91420 0.88493 1.21004 1.18366 1.03325 0.92009 1.22934 0.98995 0.86131 1.00877 1.48677 1.46412 1.12534 1.05976 1.19198 0.92129 0.82251 0.90742 1.21380 1.08385 0.94914 1.33623 0.93599 1.25732 0.96456 1.01888 0.94153 1.69995 1.22995 1.28835 1.34071 0.85380 0.78474 0.78413 0.78323 1.19572 1.19342 1.20207 1.77275 1.27739 1.20062 0.96033 1.22354 0.91044 0.74339 0.83999 1.90713 1.79522 1.50175 1.23316 1.20380 0.94559 0.95090 0.98127 1.20725 0.99340 0.92697 1.03482 1.21105 0.92585 0.98774 1.02074 0.90689 0.89790 0.90606 0.84689 0.94182 0.89681 0.91514 0.90305 0.87266 0.85921 0.85256 0.75445 0.83156 0.79105 0.96304 0.92946 0.91830 0.88733 0.90447 0.93053 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.52 16 2 C -0.08 -1.37 5.88 -19.84 -0.12 -1.49 16 3 C -0.13 -2.80 9.35 22.25 0.21 -2.59 16 4 C -0.09 -2.18 5.90 -19.75 -0.12 -2.30 16 5 C -0.11 -2.69 9.77 71.23 0.70 -2.00 16 6 C 0.11 2.62 5.34 38.15 0.20 2.83 16 7 N -0.57 -12.22 1.10 -627.69 -0.69 -12.91 16 8 C 0.10 1.17 7.06 86.83 0.61 1.78 16 9 C -0.12 -1.18 6.78 31.65 0.21 -0.97 16 10 C 0.14 3.16 3.22 44.99 0.14 3.30 16 11 H 0.11 2.47 7.26 -2.39 -0.02 2.45 16 12 N -0.69 -20.31 5.34 -323.44 -1.73 -22.03 16 13 C 0.31 12.54 8.16 133.39 1.09 13.63 16 14 C -0.31 -12.34 9.94 22.11 0.22 -12.12 16 15 C 0.06 2.50 11.43 83.52 0.96 3.45 16 16 N -0.36 -17.75 3.67 -351.84 -1.29 -19.04 16 17 C 0.28 15.18 6.26 85.63 0.54 15.72 16 18 C -0.54 -32.56 9.24 25.60 0.24 -32.33 16 19 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 20 C 0.02 1.03 5.46 84.65 0.46 1.49 16 21 N -0.92 -54.00 13.29 21.45 0.28 -53.72 16 22 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 N -0.38 -18.63 12.42 -54.54 -0.68 -19.31 16 27 C 0.50 14.15 7.02 87.90 0.62 14.77 16 28 O -0.56 -22.37 17.71 -3.07 -0.05 -22.42 16 29 C -0.08 -1.60 5.90 -19.74 -0.12 -1.72 16 30 C -0.11 -1.56 9.77 71.24 0.70 -0.87 16 31 C -0.13 -2.19 9.35 22.25 0.21 -1.98 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.08 0.71 8.08 -2.38 -0.02 0.69 16 35 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 38 H 0.07 1.61 6.56 -2.39 -0.02 1.59 16 39 H 0.08 0.91 7.43 -2.39 -0.02 0.89 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.12 0.83 8.03 -2.39 -0.02 0.81 16 42 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.41 10.67 8.70 -92.71 -0.81 9.87 16 44 H 0.15 5.23 7.48 -2.91 -0.02 5.20 16 45 H 0.19 6.51 8.06 -2.91 -0.02 6.49 16 46 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.05 2.83 8.07 -2.39 -0.02 2.81 16 48 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 49 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 51 H 0.05 0.92 6.96 -2.39 -0.02 0.91 16 52 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -82.97 432.19 5.46 -77.51 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.13 Total: 26.09 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 7.46 Total: -1.89 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -4.10 Total: -127.01 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -82.97 5.46 -77.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190976437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.990 kcal (2) G-P(sol) polarization free energy of solvation -82.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds