Wall clock time and date at job start Tue Mar 31 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35953 * 117.00263 * 2 1 4 4 C 1.38073 * 119.99837 * 0.25908 * 3 2 1 5 5 C 1.39989 * 119.83363 * 180.23127 * 4 3 2 6 6 C 1.46955 * 120.07500 * 179.79229 * 5 4 3 7 7 C 1.35060 * 120.00138 * 317.83009 * 6 5 4 8 8 C 1.46200 * 119.99908 * 345.92138 * 7 6 5 9 9 O 1.21730 * 120.00097 * 352.71905 * 8 7 6 10 10 N 1.34772 * 119.99962 * 172.72255 * 8 7 6 11 11 C 1.46495 * 120.00133 * 5.36811 * 10 8 7 12 12 C 1.39420 * 119.99875 * 185.37055 * 10 8 7 13 13 C 1.39445 * 120.86393 * 114.24589 * 12 10 8 14 14 C 1.37919 * 119.07369 * 180.02562 * 13 12 10 15 15 N 1.31985 * 120.83762 * 359.97438 * 14 13 12 16 16 C 1.31960 * 121.90719 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.58104 * 179.97438 * 16 15 14 18 18 C 1.37958 * 120.83755 * 0.02562 * 16 15 14 19 19 C 1.40034 * 119.84335 * 359.51175 * 5 4 3 20 20 C 1.37649 * 119.99860 * 0.25486 * 19 5 4 21 21 C 1.39055 * 120.16287 * 359.97438 * 20 19 5 22 22 O 1.35613 * 119.92146 * 180.02562 * 21 20 19 23 23 C 1.34756 * 116.99687 * 6.44774 * 22 21 20 24 24 H 1.07992 * 120.00210 * 5.55880 * 23 22 21 25 25 C 1.38713 * 119.99741 * 185.56322 * 23 22 21 26 26 N 1.31515 * 119.99931 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00093 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47132 * 89.99681 * 27 25 23 29 29 H 1.48499 * 109.47070 * 209.99969 * 27 25 23 30 30 H 1.48504 * 109.47019 * 329.99598 * 27 25 23 31 31 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46895 * 300.00176 * 1 2 3 33 33 H 1.08999 * 109.46968 * 59.99417 * 1 2 3 34 34 H 1.07999 * 120.08371 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.99800 * 137.83800 * 6 5 4 36 36 H 1.07992 * 119.99800 * 165.91614 * 7 6 5 37 37 H 1.08997 * 109.47202 * 270.00189 * 11 10 8 38 38 H 1.09003 * 109.47002 * 30.00156 * 11 10 8 39 39 H 1.08997 * 109.47424 * 149.99603 * 11 10 8 40 40 H 1.08010 * 120.46567 * 0.04243 * 13 12 10 41 41 H 1.08001 * 119.57950 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.47189 * 90.00196 * 17 16 15 43 43 H 1.09001 * 109.47037 * 210.00238 * 17 16 15 44 44 H 1.08993 * 109.47429 * 330.00217 * 17 16 15 45 45 H 1.08002 * 120.46318 * 179.97438 * 18 16 15 46 46 H 1.07994 * 120.00404 * 180.23581 * 19 5 4 47 47 H 1.08002 * 119.91542 * 179.97438 * 20 19 5 48 48 H 0.97003 * 120.00062 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3693 0.0054 5 6 1.9334 3.6148 0.0005 6 6 1.1383 4.8506 0.0016 7 6 0.0406 4.9480 -0.7792 8 6 -0.1896 3.9708 -1.8420 9 8 0.6686 3.1505 -2.1108 10 7 -1.3519 3.9783 -2.5241 11 6 -2.3361 5.0363 -2.2828 12 6 -1.6178 2.9791 -3.4594 13 6 -2.6514 2.0655 -3.2559 14 6 -2.8816 1.0916 -4.2050 15 7 -2.1389 1.0188 -5.2936 16 6 -1.1520 1.8644 -5.5224 17 6 -0.3368 1.7327 -6.7830 18 6 -0.8564 2.8668 -4.6218 19 6 3.3323 3.6802 0.0005 20 6 4.0754 2.5215 0.0000 21 6 3.4406 1.2843 0.0000 22 8 4.1776 0.1459 0.0000 23 6 5.5116 0.2808 0.1349 24 1 5.9394 1.2537 0.3263 25 6 6.3353 -0.8301 0.0276 26 7 5.8143 -2.0150 -0.2051 27 14 8.1846 -0.6432 0.2137 28 1 8.5581 -0.8129 1.6409 29 1 8.8712 -1.6753 -0.6039 30 1 8.5945 0.7074 -0.2480 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.2157 2.3144 0.0092 35 1 1.4318 5.6810 0.6267 36 1 -0.6671 5.7477 -0.6184 37 1 -3.0150 4.7267 -1.4883 38 1 -1.8216 5.9501 -1.9856 39 1 -2.9038 5.2194 -3.1951 40 1 -3.2634 2.1198 -2.3676 41 1 -3.6802 0.3800 -4.0558 42 1 -0.7915 2.3294 -7.5738 43 1 0.6775 2.0867 -6.5984 44 1 -0.3066 0.6870 -7.0887 45 1 -0.0470 3.5553 -4.8150 46 1 3.8280 4.6396 0.0005 47 1 5.1542 2.5735 -0.0005 48 1 6.3903 -2.7918 -0.2805 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222258244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:14 Heat of formation + Delta-G solvation = 11.843831 kcal Electronic energy + Delta-G solvation = -33407.976890 eV Core-core repulsion = 29010.095711 eV Total energy + Delta-G solvation = -4397.881179 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.92750 -39.74852 -39.10402 -37.46742 -36.58610 -35.58063 -33.17232 -32.85702 -32.22885 -31.41831 -29.41231 -28.43795 -27.87516 -26.90005 -26.61955 -25.48913 -24.47426 -23.10822 -21.89014 -21.41206 -20.57432 -18.78852 -18.06777 -17.69905 -17.30968 -16.87948 -16.55820 -16.07490 -15.83669 -15.20918 -15.11877 -14.91812 -14.57783 -14.53517 -14.42905 -13.98626 -13.83966 -13.54340 -13.43147 -13.40238 -13.32464 -12.98353 -12.92459 -12.61363 -12.47497 -12.31128 -12.15851 -11.91246 -11.70444 -11.58060 -11.28474 -11.06017 -10.93042 -10.62154 -10.47911 -10.32889 -10.04649 -9.79561 -9.54748 -9.47042 -9.23503 -9.04106 -8.80572 -8.71708 -7.56982 -6.77235 -6.45890 -3.98260 0.96128 1.03543 1.15495 2.35423 2.55157 2.78047 3.13358 3.14268 3.19035 3.41298 3.64567 3.95547 4.12557 4.21645 4.58865 4.63218 4.72740 4.85080 4.88676 4.98196 5.04390 5.09107 5.14005 5.17862 5.20359 5.34239 5.39290 5.46694 5.49612 5.57448 5.63805 5.65545 5.71763 5.73313 5.77122 5.91584 5.97087 6.04621 6.17147 6.22887 6.36348 6.42500 6.51029 6.67322 6.77769 7.00113 7.12495 7.23300 7.25829 7.37272 7.67740 7.90630 7.95454 8.27247 8.29165 8.97848 9.70541 10.70988 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.002895 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.974947 B = 9669.354292 C =10854.508858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.304 6.304 3 C 0.047 3.953 4 C -0.086 4.086 5 C -0.162 4.162 6 C 0.037 3.963 7 C -0.273 4.273 8 C 0.542 3.458 9 O -0.490 6.490 10 N -0.586 5.586 11 C 0.084 3.916 12 C 0.200 3.800 13 C -0.189 4.189 14 C 0.113 3.887 15 N -0.490 5.490 16 C 0.139 3.861 17 C -0.104 4.104 18 C -0.157 4.157 19 C -0.062 4.062 20 C -0.229 4.229 21 C 0.153 3.847 22 O -0.155 6.155 23 C -0.389 4.389 24 H 0.094 0.906 25 C 0.040 3.960 26 N -0.851 5.851 27 Si 0.943 3.057 28 H -0.272 1.272 29 H -0.277 1.277 30 H -0.266 1.266 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.109 0.891 47 H 0.134 0.866 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 14.818 -4.579 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.003 3.997 4 C -0.106 4.106 5 C -0.163 4.163 6 C 0.017 3.983 7 C -0.294 4.294 8 C 0.335 3.665 9 O -0.364 6.364 10 N -0.318 5.318 11 C -0.058 4.058 12 C 0.100 3.900 13 C -0.210 4.210 14 C -0.045 4.045 15 N -0.200 5.200 16 C 0.002 3.998 17 C -0.162 4.162 18 C -0.179 4.179 19 C -0.080 4.080 20 C -0.249 4.249 21 C 0.097 3.903 22 O -0.057 6.057 23 C -0.465 4.465 24 H 0.112 0.888 25 C -0.166 4.166 26 N -0.484 5.484 27 Si 0.767 3.233 28 H -0.198 1.198 29 H -0.202 1.202 30 H -0.191 1.191 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.152 0.848 46 H 0.127 0.873 47 H 0.151 0.849 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.866 13.039 -5.359 21.982 hybrid contribution 0.588 1.129 0.752 1.479 sum -16.278 14.168 -4.607 22.066 Atomic orbital electron populations 1.22806 0.80696 1.02561 0.99907 1.86206 1.19136 1.26489 1.89939 1.17963 0.89324 0.84450 1.07988 1.20504 0.97427 0.90735 1.01892 1.18044 0.92802 0.91367 1.14079 1.22388 0.90278 0.94587 0.91036 1.22572 1.02593 1.03326 1.00953 1.18660 0.80445 0.84680 0.82713 1.91050 1.41537 1.37734 1.66059 1.45390 1.19601 1.26579 1.40257 1.21849 0.92001 0.90101 1.01878 1.17766 0.94431 0.89211 0.88577 1.22194 1.00847 0.96323 1.01660 1.22566 0.97196 0.95798 0.88899 1.67520 1.05705 1.25350 1.21435 1.21179 0.92612 0.89999 0.96058 1.20728 0.98467 1.03914 0.93064 1.22094 1.01498 1.00764 0.93549 1.20697 0.92146 0.97115 0.98068 1.20731 1.00396 0.90835 1.12931 1.18846 0.88245 0.87615 0.95571 1.84012 1.19611 1.25673 1.76363 1.21442 0.78822 0.96373 1.49894 0.88837 1.25360 1.00522 0.94308 0.96403 1.70055 1.36225 0.98770 1.43326 0.85690 0.80323 0.78645 0.78657 1.19779 1.20181 1.19062 0.89263 0.94028 0.93869 0.87401 0.85597 0.85556 0.92310 0.89990 0.91221 0.84832 0.82481 0.90468 0.90455 0.90202 0.84830 0.87251 0.84875 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.63 16 2 O -0.30 -7.32 10.28 -34.21 -0.35 -7.67 16 3 C 0.05 1.14 6.70 -39.12 -0.26 0.88 16 4 C -0.09 -1.75 5.70 -38.99 -0.22 -1.97 16 5 C -0.16 -2.96 4.51 -105.04 -0.47 -3.43 16 6 C 0.04 0.49 9.80 -37.18 -0.36 0.13 16 7 C -0.27 -3.30 9.07 -37.52 -0.34 -3.64 16 8 C 0.54 8.02 6.45 -13.07 -0.08 7.94 16 9 O -0.49 -9.60 11.97 5.16 0.06 -9.54 16 10 N -0.59 -6.94 2.95 -122.27 -0.36 -7.30 16 11 C 0.08 0.60 9.97 59.84 0.60 1.19 16 12 C 0.20 2.59 4.89 -83.52 -0.41 2.18 16 13 C -0.19 -2.13 9.94 -39.25 -0.39 -2.52 16 14 C 0.11 1.30 11.17 -17.60 -0.20 1.10 16 15 N -0.49 -6.67 10.27 -9.56 -0.10 -6.76 16 16 C 0.14 1.85 6.78 -82.64 -0.56 1.29 16 17 C -0.10 -1.11 10.17 36.00 0.37 -0.74 16 18 C -0.16 -2.15 8.99 -39.25 -0.35 -2.51 16 19 C -0.06 -1.18 9.78 -39.12 -0.38 -1.56 16 20 C -0.23 -5.21 9.10 -39.49 -0.36 -5.57 16 21 C 0.15 4.00 6.67 -38.76 -0.26 3.74 16 22 O -0.15 -4.69 9.52 -13.93 -0.13 -4.82 16 23 C -0.39 -11.17 9.43 30.91 0.29 -10.88 16 24 H 0.09 2.45 5.30 -52.49 -0.28 2.17 16 25 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 26 N -0.85 -25.57 13.67 55.48 0.76 -24.81 16 27 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 28 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 29 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 30 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.04 0.64 7.65 -51.93 -0.40 0.25 16 33 H 0.04 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.11 2.01 5.27 -52.49 -0.28 1.73 16 35 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 36 H 0.13 1.04 6.26 -52.49 -0.33 0.71 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.46 6.25 -51.93 -0.32 0.14 16 39 H 0.07 0.42 8.05 -51.93 -0.42 0.01 16 40 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 41 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.13 2.96 5.71 -52.49 -0.30 2.66 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -37.18 405.32 -7.62 -44.80 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.08 Total: 6.02 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.51 Total: -11.71 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.30 Total: -38.88 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.42 Total: -22.02 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.18 -7.62 -44.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222258244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.643 kcal (2) G-P(sol) polarization free energy of solvation -37.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds