Wall clock time and date at job start Tue Mar 31 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35953 * 117.00263 * 2 1 4 4 C 1.38073 * 119.99837 * 0.25908 * 3 2 1 5 5 C 1.39989 * 119.83363 * 180.23127 * 4 3 2 6 6 C 1.46955 * 120.07500 * 179.79229 * 5 4 3 7 7 C 1.35060 * 120.00138 * 317.83009 * 6 5 4 8 8 C 1.46200 * 119.99908 * 345.92138 * 7 6 5 9 9 O 1.21730 * 120.00097 * 352.71905 * 8 7 6 10 10 N 1.34772 * 119.99962 * 172.72255 * 8 7 6 11 11 C 1.46495 * 120.00133 * 5.36811 * 10 8 7 12 12 C 1.39420 * 119.99875 * 185.37055 * 10 8 7 13 13 C 1.39445 * 120.86393 * 114.24589 * 12 10 8 14 14 C 1.37919 * 119.07369 * 180.02562 * 13 12 10 15 15 N 1.31985 * 120.83762 * 359.97438 * 14 13 12 16 16 C 1.31960 * 121.90719 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.58104 * 179.97438 * 16 15 14 18 18 C 1.37958 * 120.83755 * 0.02562 * 16 15 14 19 19 C 1.40034 * 119.84335 * 359.51175 * 5 4 3 20 20 C 1.37649 * 119.99860 * 0.25486 * 19 5 4 21 21 C 1.39055 * 120.16287 * 359.97438 * 20 19 5 22 22 O 1.35613 * 119.92146 * 180.02562 * 21 20 19 23 23 C 1.34756 * 116.99687 * 6.44774 * 22 21 20 24 24 H 1.07992 * 120.00210 * 5.55880 * 23 22 21 25 25 C 1.38713 * 119.99741 * 185.56322 * 23 22 21 26 26 N 1.31515 * 119.99931 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00093 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47132 * 89.99681 * 27 25 23 29 29 H 1.48499 * 109.47070 * 209.99969 * 27 25 23 30 30 H 1.48504 * 109.47019 * 329.99598 * 27 25 23 31 31 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46895 * 300.00176 * 1 2 3 33 33 H 1.08999 * 109.46968 * 59.99417 * 1 2 3 34 34 H 1.07999 * 120.08371 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.99800 * 137.83800 * 6 5 4 36 36 H 1.07992 * 119.99800 * 165.91614 * 7 6 5 37 37 H 1.08997 * 109.47202 * 270.00189 * 11 10 8 38 38 H 1.09003 * 109.47002 * 30.00156 * 11 10 8 39 39 H 1.08997 * 109.47424 * 149.99603 * 11 10 8 40 40 H 1.08010 * 120.46567 * 0.04243 * 13 12 10 41 41 H 1.08001 * 119.57950 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.47189 * 90.00196 * 17 16 15 43 43 H 1.09001 * 109.47037 * 210.00238 * 17 16 15 44 44 H 1.08993 * 109.47429 * 330.00217 * 17 16 15 45 45 H 1.08002 * 120.46318 * 179.97438 * 18 16 15 46 46 H 1.07994 * 120.00404 * 180.23581 * 19 5 4 47 47 H 1.08002 * 119.91542 * 179.97438 * 20 19 5 48 48 H 0.97003 * 120.00062 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3693 0.0054 5 6 1.9334 3.6148 0.0005 6 6 1.1383 4.8506 0.0016 7 6 0.0406 4.9480 -0.7792 8 6 -0.1896 3.9708 -1.8420 9 8 0.6686 3.1505 -2.1108 10 7 -1.3519 3.9783 -2.5241 11 6 -2.3361 5.0363 -2.2828 12 6 -1.6178 2.9791 -3.4594 13 6 -2.6514 2.0655 -3.2559 14 6 -2.8816 1.0916 -4.2050 15 7 -2.1389 1.0188 -5.2936 16 6 -1.1520 1.8644 -5.5224 17 6 -0.3368 1.7327 -6.7830 18 6 -0.8564 2.8668 -4.6218 19 6 3.3323 3.6802 0.0005 20 6 4.0754 2.5215 0.0000 21 6 3.4406 1.2843 0.0000 22 8 4.1776 0.1459 0.0000 23 6 5.5116 0.2808 0.1349 24 1 5.9394 1.2537 0.3263 25 6 6.3353 -0.8301 0.0276 26 7 5.8143 -2.0150 -0.2051 27 14 8.1846 -0.6432 0.2137 28 1 8.5581 -0.8129 1.6409 29 1 8.8712 -1.6753 -0.6039 30 1 8.5945 0.7074 -0.2480 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.2157 2.3144 0.0092 35 1 1.4318 5.6810 0.6267 36 1 -0.6671 5.7477 -0.6184 37 1 -3.0150 4.7267 -1.4883 38 1 -1.8216 5.9501 -1.9856 39 1 -2.9038 5.2194 -3.1951 40 1 -3.2634 2.1198 -2.3676 41 1 -3.6802 0.3800 -4.0558 42 1 -0.7915 2.3294 -7.5738 43 1 0.6775 2.0867 -6.5984 44 1 -0.3066 0.6870 -7.0887 45 1 -0.0470 3.5553 -4.8150 46 1 3.8280 4.6396 0.0005 47 1 5.1542 2.5735 -0.0005 48 1 6.3903 -2.7918 -0.2805 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222258244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:13 Heat of formation + Delta-G solvation = -13.238489 kcal Electronic energy + Delta-G solvation = -33409.064541 eV Core-core repulsion = 29010.095711 eV Total energy + Delta-G solvation = -4398.968830 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.96577 -41.26235 -40.36945 -39.27749 -38.01117 -36.83224 -34.62246 -34.02468 -33.76291 -32.45724 -31.08322 -29.95438 -28.75741 -28.13782 -27.62462 -27.41266 -25.67053 -24.17577 -23.32498 -22.99920 -21.80052 -20.08168 -19.84427 -19.04623 -18.53036 -18.11556 -17.74613 -17.42193 -16.98921 -16.74005 -16.70731 -16.37469 -15.97993 -15.70058 -15.50564 -15.36365 -15.26669 -15.08334 -14.97571 -14.57008 -14.33035 -14.19102 -13.92121 -13.76013 -13.49703 -13.44869 -13.32286 -13.20885 -13.11100 -12.85332 -12.81246 -12.65785 -12.55682 -12.18643 -12.05467 -11.90110 -11.39718 -11.10106 -10.93131 -10.81158 -10.55396 -10.39315 -9.98271 -9.74798 -9.17265 -8.50985 -8.46765 -6.11757 -0.18998 0.07033 0.13748 0.65921 1.02075 1.33098 1.45003 1.52252 1.87152 2.17176 2.29031 2.55074 2.69686 2.84428 3.16033 3.34235 3.40908 3.70777 3.83686 3.87567 3.97189 4.05990 4.08575 4.15249 4.19309 4.25058 4.28764 4.38528 4.48968 4.50683 4.52131 4.58828 4.65965 4.67893 4.70713 4.70876 4.83906 4.88568 5.00636 5.08272 5.08693 5.09540 5.16804 5.23319 5.43879 5.51254 5.58931 5.72841 5.83602 5.95774 6.06100 6.27073 6.61076 6.95627 6.96247 7.19393 7.80726 8.76880 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.002895 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.974947 B = 9669.354292 C =10854.508858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.347 6.347 3 C 0.025 3.975 4 C -0.080 4.080 5 C -0.128 4.128 6 C 0.015 3.985 7 C -0.232 4.232 8 C 0.529 3.471 9 O -0.551 6.551 10 N -0.577 5.577 11 C 0.072 3.928 12 C 0.184 3.816 13 C -0.184 4.184 14 C 0.107 3.893 15 N -0.513 5.513 16 C 0.122 3.878 17 C -0.103 4.103 18 C -0.178 4.178 19 C -0.074 4.074 20 C -0.228 4.228 21 C 0.096 3.904 22 O -0.222 6.222 23 C -0.415 4.415 24 H 0.104 0.896 25 C -0.026 4.026 26 N -0.920 5.920 27 Si 1.023 2.977 28 H -0.260 1.260 29 H -0.272 1.272 30 H -0.250 1.250 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.126 0.874 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.162 0.838 41 H 0.188 0.812 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.124 0.876 46 H 0.154 0.846 47 H 0.128 0.872 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.265 19.804 -3.734 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.263 6.263 3 C -0.020 4.020 4 C -0.099 4.099 5 C -0.129 4.129 6 C -0.004 4.004 7 C -0.253 4.253 8 C 0.322 3.678 9 O -0.428 6.428 10 N -0.307 5.307 11 C -0.068 4.068 12 C 0.085 3.915 13 C -0.205 4.205 14 C -0.050 4.050 15 N -0.224 5.224 16 C -0.015 4.015 17 C -0.160 4.160 18 C -0.200 4.200 19 C -0.092 4.092 20 C -0.247 4.247 21 C 0.045 3.955 22 O -0.128 6.128 23 C -0.491 4.491 24 H 0.122 0.878 25 C -0.223 4.223 26 N -0.558 5.558 27 Si 0.842 3.158 28 H -0.185 1.185 29 H -0.196 1.196 30 H -0.173 1.173 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.144 0.856 35 H 0.196 0.804 36 H 0.200 0.800 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.180 0.820 41 H 0.205 0.795 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.142 0.858 46 H 0.172 0.828 47 H 0.146 0.854 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.908 18.131 -4.518 27.304 hybrid contribution 0.874 0.011 0.368 0.948 sum -19.034 18.143 -4.150 26.621 Atomic orbital electron populations 1.23057 0.77805 1.04381 1.00798 1.86141 1.22357 1.27515 1.90270 1.18384 0.89211 0.85675 1.08708 1.20771 0.98070 0.90358 1.00729 1.18732 0.93162 0.93038 1.07969 1.22692 0.90075 0.93817 0.93785 1.23089 1.01675 1.02597 0.97900 1.19362 0.80506 0.84511 0.83380 1.91064 1.43748 1.40206 1.67828 1.45481 1.19567 1.26901 1.38777 1.22253 0.91667 0.89432 1.03434 1.18020 0.94771 0.90126 0.88614 1.22446 1.00382 0.95356 1.02363 1.23156 0.97314 0.96267 0.88241 1.67570 1.06342 1.25766 1.22746 1.21518 0.93009 0.90066 0.96887 1.20765 0.98266 1.04038 0.92938 1.22142 1.01856 1.01257 0.94713 1.21151 0.92763 0.97500 0.97760 1.20948 1.00629 0.91205 1.11935 1.19517 0.89472 0.88135 0.98337 1.83976 1.20241 1.27809 1.80788 1.21932 0.79203 0.97232 1.50723 0.87830 1.26722 1.06211 0.93559 0.95823 1.70225 1.38299 0.99927 1.47337 0.84538 0.72890 0.79275 0.79136 1.18492 1.19648 1.17311 0.87228 0.91590 0.94061 0.85589 0.80404 0.79968 0.89996 0.87636 0.90214 0.82034 0.79501 0.88323 0.90697 0.90611 0.85779 0.82809 0.85399 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 9.81 113.37 1.11 2.33 16 2 O -0.35 -17.81 10.28 -79.05 -0.81 -18.62 16 3 C 0.02 1.25 6.70 22.57 0.15 1.40 16 4 C -0.08 -3.18 5.70 22.66 0.13 -3.05 16 5 C -0.13 -4.31 4.51 -20.13 -0.09 -4.41 16 6 C 0.02 0.32 9.80 23.82 0.23 0.55 16 7 C -0.23 -4.06 9.07 23.61 0.21 -3.85 16 8 C 0.53 13.63 6.45 86.31 0.56 14.18 16 9 O -0.55 -20.84 11.97 -4.44 -0.05 -20.89 16 10 N -0.58 -11.42 2.95 -658.97 -1.95 -13.36 16 11 C 0.07 0.61 9.97 127.77 1.27 1.88 16 12 C 0.18 4.42 4.89 38.51 0.19 4.60 16 13 C -0.18 -3.68 9.94 22.49 0.22 -3.46 16 14 C 0.11 2.28 11.17 84.59 0.95 3.23 16 15 N -0.51 -13.77 10.27 -184.16 -1.89 -15.66 16 16 C 0.12 3.29 6.78 42.47 0.29 3.58 16 17 C -0.10 -2.24 10.17 71.23 0.72 -1.52 16 18 C -0.18 -4.85 8.99 22.49 0.20 -4.65 16 19 C -0.07 -2.69 9.78 22.57 0.22 -2.46 16 20 C -0.23 -10.75 9.10 22.33 0.20 -10.54 16 21 C 0.10 5.42 6.67 22.80 0.15 5.57 16 22 O -0.22 -14.75 9.52 -6.51 -0.06 -14.81 16 23 C -0.42 -25.80 9.43 67.93 0.64 -25.16 16 24 H 0.10 5.83 5.30 -2.91 -0.02 5.81 16 25 C -0.03 -1.55 5.49 84.85 0.47 -1.09 16 26 N -0.92 -60.15 13.67 21.62 0.30 -59.85 16 27 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 28 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 31 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.07 1.97 7.65 -2.38 -0.02 1.95 16 33 H 0.04 1.45 7.67 -2.39 -0.02 1.43 16 34 H 0.13 4.42 5.27 -2.91 -0.02 4.41 16 35 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.18 1.26 6.26 -2.91 -0.02 1.24 16 37 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.11 0.41 6.25 -2.39 -0.01 0.39 16 39 H 0.08 0.58 8.05 -2.39 -0.02 0.56 16 40 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 47 H 0.13 5.98 5.71 -2.91 -0.02 5.97 16 48 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -95.43 405.32 6.39 -89.04 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 1.00 Total: 30.11 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 7.83 Total: -22.86 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.54 Total: -88.88 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -0.93 Total: -54.33 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -95.43 6.39 -89.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222258244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.800 kcal (2) G-P(sol) polarization free energy of solvation -95.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds