Wall clock time and date at job start Tue Mar 31 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38283 * 119.97428 * 2 1 4 4 C 1.38248 * 120.11297 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.05208 * 359.76528 * 4 3 2 6 6 C 1.50704 * 120.02758 * 180.25053 * 5 4 3 7 7 C 1.52996 * 109.47329 * 300.27728 * 6 5 4 8 8 C 1.52999 * 109.46668 * 60.28267 * 6 5 4 9 9 C 1.38714 * 119.94761 * 0.53090 * 5 4 3 10 10 O 1.35896 * 120.06118 * 179.71744 * 9 5 4 11 11 C 1.42897 * 117.00120 * 182.21024 * 10 9 5 12 12 H 1.08991 * 109.47908 * 324.04352 * 11 10 9 13 13 C 1.53003 * 109.46971 * 84.04296 * 11 10 9 14 14 C 1.50701 * 109.47081 * 204.03682 * 11 10 9 15 15 O 1.21277 * 120.00387 * 355.00903 * 14 11 10 16 16 N 1.34779 * 119.99505 * 175.00200 * 14 11 10 17 17 C 1.39249 * 119.99684 * 185.19994 * 16 14 11 18 18 C 1.39476 * 119.83362 * 213.20717 * 17 16 14 19 19 C 1.36377 * 120.16511 * 179.76535 * 18 17 16 20 20 C 1.40874 * 119.83041 * 0.50988 * 19 18 17 21 21 C 1.41152 * 120.16457 * 179.71981 * 20 19 18 22 22 H 1.07994 * 119.99860 * 209.59302 * 21 20 19 23 23 C 1.39906 * 119.99856 * 29.59122 * 21 20 19 24 24 N 1.30872 * 119.99920 * 10.63548 * 23 21 20 25 25 Si 1.86793 * 120.00007 * 190.62725 * 23 21 20 26 26 H 1.48504 * 109.47139 * 60.00082 * 25 23 21 27 27 H 1.48499 * 109.47456 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47582 * 300.00493 * 25 23 21 29 29 C 1.40866 * 119.66947 * 359.74590 * 20 19 18 30 30 C 1.36373 * 119.83027 * 359.97438 * 29 20 19 31 31 C 1.38119 * 119.96676 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47088 * 269.98490 * 1 2 3 33 33 H 1.09007 * 109.46600 * 29.97691 * 1 2 3 34 34 H 1.08993 * 109.47681 * 149.97678 * 1 2 3 35 35 H 1.08002 * 119.94803 * 359.97438 * 3 2 1 36 36 H 1.07998 * 119.97133 * 180.02562 * 4 3 2 37 37 H 1.08997 * 109.46707 * 180.27811 * 6 5 4 38 38 H 1.09002 * 109.46766 * 60.00110 * 7 6 5 39 39 H 1.08997 * 109.46991 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.47452 * 300.00307 * 7 6 5 41 41 H 1.08997 * 109.47184 * 299.99251 * 8 6 5 42 42 H 1.08997 * 109.47550 * 59.99896 * 8 6 5 43 43 H 1.09001 * 109.46675 * 180.02562 * 8 6 5 44 44 H 1.09002 * 109.47221 * 59.99534 * 13 11 10 45 45 H 1.09003 * 109.47125 * 300.00338 * 13 11 10 46 46 H 1.08996 * 109.47226 * 179.97438 * 13 11 10 47 47 H 0.96991 * 120.00848 * 5.20658 * 16 14 11 48 48 H 1.07994 * 119.91586 * 0.02562 * 18 17 16 49 49 H 1.08003 * 120.08245 * 180.25418 * 19 18 17 50 50 H 0.97002 * 119.99779 * 180.02562 * 24 23 21 51 51 H 1.08001 * 120.08447 * 179.97438 * 29 20 19 52 52 H 1.08001 * 119.91916 * 179.97438 * 30 29 20 53 53 H 1.07999 * 120.03156 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.2752 0.0070 0.0060 6 6 5.7822 0.0113 0.0123 7 6 6.2953 0.7374 -1.2328 8 6 6.2848 0.7305 1.2657 9 6 3.5845 -1.1960 -0.0002 10 8 4.2656 -2.3719 -0.0007 11 6 3.4901 -3.5708 -0.0564 12 1 2.5723 -3.4369 0.5160 13 6 3.1415 -3.8855 -1.5125 14 6 4.2845 -4.7106 0.5275 15 8 5.4359 -4.5363 0.8663 16 7 3.7154 -5.9236 0.6732 17 6 4.4115 -6.9471 1.3110 18 6 4.2272 -8.2689 0.9057 19 6 4.9090 -9.2762 1.5224 20 6 5.7933 -8.9799 2.5783 21 6 6.4981 -10.0175 3.2255 22 1 6.7763 -9.9154 4.2640 23 6 6.8364 -11.1783 2.5216 24 7 6.6890 -11.2218 1.2219 25 14 7.4986 -12.6660 3.4367 26 1 6.4918 -13.1271 4.4262 27 1 7.7790 -13.7576 2.4698 28 1 8.7521 -12.2959 4.1419 29 6 5.9700 -7.6430 2.9855 30 6 5.2855 -6.6459 2.3554 31 6 2.1969 -1.1965 -0.0005 32 1 -0.3633 -0.0003 1.0277 33 1 -0.3633 0.8903 -0.5135 34 1 -0.3634 -0.8897 -0.5141 35 1 1.6566 2.1325 -0.0004 36 1 4.1176 2.1381 0.0010 37 1 6.1484 -1.0153 0.0110 38 1 5.9291 1.7640 -1.2315 39 1 7.3853 0.7409 -1.2280 40 1 5.9372 0.2250 -2.1258 41 1 5.9186 1.7571 1.2669 42 1 5.9192 0.2132 2.1527 43 1 7.3748 0.7340 1.2700 44 1 4.0593 -4.0195 -2.0851 45 1 2.5670 -3.0611 -1.9350 46 1 2.5503 -4.8003 -1.5551 47 1 2.8210 -6.0836 0.3338 48 1 3.5459 -8.4949 0.0988 49 1 4.7684 -10.2988 1.2048 50 1 6.9232 -12.0268 0.7339 51 1 6.6459 -7.4083 3.7945 52 1 5.4196 -5.6204 2.6667 53 1 1.6569 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225508170.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:02 Heat of formation + Delta-G solvation = -57.735864 kcal Electronic energy + Delta-G solvation = -32465.980480 eV Core-core repulsion = 28266.341105 eV Total energy + Delta-G solvation = -4199.639375 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 367.193 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.92154 -40.99539 -39.34856 -38.46975 -36.69640 -36.23776 -34.90303 -33.17634 -32.19400 -31.50820 -30.90871 -30.60040 -28.00887 -27.58695 -27.13916 -25.62436 -24.03281 -23.38778 -22.90744 -22.35241 -21.31938 -20.84902 -19.30871 -18.96401 -18.60910 -17.72659 -17.12758 -17.04056 -16.75465 -16.46575 -15.89494 -15.80277 -15.59087 -15.17298 -14.88622 -14.81333 -14.69945 -14.51475 -14.42113 -14.18744 -14.10085 -14.03179 -13.68321 -13.44437 -13.33892 -13.22614 -13.11193 -12.95013 -12.89685 -12.78852 -12.77293 -12.57718 -12.47295 -12.36622 -12.09993 -11.82302 -11.75264 -11.53620 -11.44185 -11.43273 -11.22802 -10.86786 -10.64297 -9.62543 -9.51280 -9.01070 -8.84384 -8.59053 -6.32349 0.37754 0.50025 0.72914 1.09554 1.38644 1.41836 1.50861 1.59013 1.71224 2.21952 2.61077 2.75436 2.78748 3.49160 3.63881 3.68788 3.71373 3.82656 3.87134 4.03272 4.17527 4.22098 4.30939 4.36173 4.43788 4.46255 4.53076 4.56261 4.60849 4.72679 4.77523 4.82449 4.87050 4.88596 4.89199 4.95114 5.02126 5.05469 5.07531 5.10748 5.14744 5.25722 5.27315 5.34496 5.36440 5.37960 5.47477 5.62514 5.63688 5.68706 5.82943 5.89893 5.98594 6.06610 6.33821 6.40823 6.61582 6.64617 6.91510 6.95081 7.27348 8.35708 Molecular weight = 367.19amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.001860 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.521610 B =15053.078735 C =15945.913698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.056 4.056 3 C -0.159 4.159 4 C -0.076 4.076 5 C -0.127 4.127 6 C -0.057 4.057 7 C -0.134 4.134 8 C -0.136 4.136 9 C 0.110 3.890 10 O -0.310 6.310 11 C 0.076 3.924 12 H 0.125 0.875 13 C -0.167 4.167 14 C 0.500 3.500 15 O -0.561 6.561 16 N -0.633 5.633 17 C 0.013 3.987 18 C -0.110 4.110 19 C -0.163 4.163 20 C 0.074 3.926 21 C -0.496 4.496 22 H 0.074 0.926 23 C 0.031 3.969 24 N -0.831 5.831 25 Si 0.987 3.013 26 H -0.257 1.257 27 H -0.266 1.266 28 H -0.264 1.264 29 C -0.229 4.229 30 C -0.092 4.092 31 C -0.217 4.217 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.420 0.580 48 H 0.130 0.870 49 H 0.114 0.886 50 H 0.288 0.712 51 H 0.093 0.907 52 H 0.097 0.903 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.074 22.013 -7.197 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.177 4.177 4 C -0.093 4.093 5 C -0.128 4.128 6 C -0.076 4.076 7 C -0.191 4.191 8 C -0.194 4.194 9 C 0.065 3.935 10 O -0.224 6.224 11 C 0.017 3.983 12 H 0.142 0.858 13 C -0.224 4.224 14 C 0.287 3.713 15 O -0.439 6.439 16 N -0.280 5.280 17 C -0.080 4.080 18 C -0.130 4.130 19 C -0.183 4.183 20 C 0.072 3.928 21 C -0.526 4.526 22 H 0.092 0.908 23 C -0.182 4.182 24 N -0.458 5.458 25 Si 0.807 3.193 26 H -0.182 1.182 27 H -0.191 1.191 28 H -0.189 1.189 29 C -0.249 4.249 30 C -0.112 4.112 31 C -0.235 4.235 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.124 0.876 47 H 0.258 0.742 48 H 0.148 0.852 49 H 0.131 0.869 50 H 0.099 0.901 51 H 0.111 0.889 52 H 0.115 0.885 53 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.033 21.991 -7.170 26.549 hybrid contribution 0.402 -1.122 0.359 1.245 sum -12.630 20.869 -6.811 25.326 Atomic orbital electron populations 1.20866 0.88981 1.03986 1.03193 1.20041 0.97463 0.92060 0.96086 1.21257 0.93888 0.98484 1.04053 1.21030 0.94389 0.96768 0.97147 1.19398 0.95840 0.90838 1.06684 1.19944 0.90765 0.99934 0.96930 1.21782 1.00984 1.00548 0.95794 1.21796 1.01062 1.00592 0.95911 1.19169 0.91375 0.85234 0.97693 1.86190 1.35544 1.12105 1.88536 1.22223 0.94017 0.82041 1.00036 0.85808 1.22312 1.03172 1.05042 0.91915 1.20863 0.87217 0.84442 0.78771 1.90724 1.19355 1.83368 1.50421 1.42697 1.19129 1.09013 1.57130 1.17190 1.04639 0.87548 0.98629 1.20502 1.01446 0.90981 1.00034 1.20958 0.98299 0.98578 1.00462 1.18007 0.90471 0.91938 0.92383 1.19746 1.33211 1.00976 0.98642 0.90801 1.26756 0.93911 1.02125 0.95456 1.69849 1.37597 1.29793 1.08524 0.85184 0.79236 0.76138 0.78712 1.18165 1.19066 1.18893 1.20822 1.05703 0.93021 1.05390 1.20347 0.97880 0.97606 0.95325 1.21312 0.91956 1.00294 1.09954 0.90365 0.89976 0.90688 0.83548 0.83571 0.93047 0.90792 0.92098 0.93573 0.90673 0.94384 0.92076 0.92515 0.88924 0.87634 0.74151 0.85224 0.86861 0.90113 0.88879 0.88499 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.38 16 2 C -0.06 -0.89 5.88 -19.88 -0.12 -1.01 16 3 C -0.16 -2.39 9.70 22.28 0.22 -2.17 16 4 C -0.08 -1.31 8.71 22.25 0.19 -1.12 16 5 C -0.13 -2.94 4.79 -19.77 -0.09 -3.03 16 6 C -0.06 -1.36 3.06 -11.54 -0.04 -1.40 16 7 C -0.13 -2.52 9.00 71.98 0.65 -1.87 16 8 C -0.14 -2.83 9.01 71.98 0.65 -2.18 16 9 C 0.11 2.77 6.54 22.51 0.15 2.92 16 10 O -0.31 -9.45 8.11 -73.39 -0.60 -10.05 16 11 C 0.08 1.91 2.65 29.85 0.08 1.99 16 12 H 0.12 2.34 5.98 -2.39 -0.01 2.32 16 13 C -0.17 -3.08 9.21 71.98 0.66 -2.42 16 14 C 0.50 17.66 6.90 87.66 0.61 18.26 16 15 O -0.56 -26.39 14.16 15.97 0.23 -26.16 16 16 N -0.63 -20.86 5.27 -303.10 -1.60 -22.46 16 17 C 0.01 0.58 6.29 38.56 0.24 0.82 16 18 C -0.11 -4.85 9.89 22.13 0.22 -4.63 16 19 C -0.16 -8.46 8.60 22.48 0.19 -8.27 16 20 C 0.07 4.15 5.54 -21.28 -0.12 4.03 16 21 C -0.50 -27.38 9.04 23.39 0.21 -27.17 16 22 H 0.07 3.95 7.87 -2.91 -0.02 3.92 16 23 C 0.03 1.60 5.25 85.24 0.45 2.04 16 24 N -0.83 -43.73 10.88 21.82 0.24 -43.50 16 25 Si 0.99 38.72 29.57 68.60 2.03 40.75 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 28 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 29 C -0.23 -12.29 9.74 22.48 0.22 -12.07 16 30 C -0.09 -4.56 8.57 22.13 0.19 -4.37 16 31 C -0.22 -4.18 8.02 22.37 0.18 -4.00 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.56 8.09 -2.38 -0.02 0.54 16 34 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.15 1.84 7.10 -2.91 -0.02 1.82 16 37 H 0.05 1.61 6.99 -2.39 -0.02 1.59 16 38 H 0.07 1.06 7.37 -2.39 -0.02 1.04 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.19 7.41 -2.39 -0.02 1.17 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 1.37 7.38 -2.39 -0.02 1.36 16 46 H 0.11 1.36 7.76 -2.39 -0.02 1.34 16 47 H 0.42 9.56 8.42 -92.71 -0.78 8.78 16 48 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 49 H 0.11 6.04 6.27 -2.91 -0.02 6.02 16 50 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 51 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 52 H 0.10 4.87 6.40 -2.91 -0.02 4.86 16 53 H 0.14 2.17 5.68 -2.91 -0.02 2.15 16 Total: -1.00 -73.78 427.85 5.90 -67.88 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: 0.15 Total: 39.56 kcal Atomic # 6 Polarization: -51.47 SS G_CDS: 5.45 Total: -46.02 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -1.36 Total: -65.96 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.37 Total: -36.21 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -73.78 5.90 -67.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225508170.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.148 kcal (2) G-P(sol) polarization free energy of solvation -73.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds