Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 S 1.81401 * 109.46996 * 119.99876 * 2 1 3 5 5 C 1.76202 * 103.00267 * 65.00130 * 4 2 1 6 6 N 1.31144 * 125.52855 * 359.97438 * 5 4 2 7 7 N 1.40419 * 106.95154 * 179.78395 * 6 5 4 8 8 H 0.96997 * 126.76982 * 180.24709 * 7 6 5 9 9 C 1.34933 * 106.46260 * 0.35429 * 7 6 5 10 10 N 1.38292 * 126.00045 * 179.91543 * 9 7 6 11 11 S 1.65606 * 120.00234 * 194.71216 * 10 9 7 12 12 O 1.42095 * 106.39828 * 311.45473 * 11 10 9 13 13 O 1.42099 * 106.40039 * 178.53862 * 11 10 9 14 14 C 1.76196 * 107.21539 * 64.99872 * 11 10 9 15 15 C 1.38661 * 119.87204 * 269.97491 * 14 11 10 16 16 C 1.38615 * 120.49695 * 180.02562 * 15 14 11 17 17 C 1.37638 * 120.25222 * 359.97438 * 16 15 14 18 18 C 1.40700 * 119.74069 * 0.02562 * 17 16 15 19 19 C 1.41398 * 120.24232 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99853 * 335.57949 * 19 18 17 21 21 C 1.39945 * 119.99944 * 155.57438 * 19 18 17 22 22 N 1.30826 * 120.00259 * 341.92569 * 21 19 18 23 23 Si 1.86806 * 119.99911 * 161.92338 * 21 19 18 24 24 H 1.48501 * 109.46904 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47094 * 120.00303 * 23 21 19 26 26 H 1.48500 * 109.46961 * 240.00232 * 23 21 19 27 27 C 1.37599 * 119.87557 * 90.00268 * 14 11 10 28 28 N 1.31606 * 108.00272 * 359.64549 * 9 7 6 29 29 H 1.08996 * 109.47271 * 60.00214 * 1 2 3 30 30 H 1.09001 * 109.47374 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47492 * 300.00007 * 1 2 3 32 32 H 1.09004 * 109.46863 * 239.99723 * 2 1 3 33 33 H 1.09003 * 109.46876 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46909 * 299.99431 * 3 2 1 35 35 H 1.09001 * 109.47066 * 60.00239 * 3 2 1 36 36 H 0.97007 * 119.99725 * 14.71152 * 10 9 7 37 37 H 1.07994 * 119.74800 * 0.02562 * 15 14 11 38 38 H 1.08001 * 119.87119 * 179.97438 * 16 15 14 39 39 H 1.07999 * 120.13151 * 180.02562 * 17 16 15 40 40 H 0.96997 * 120.00151 * 180.02562 * 22 21 19 41 41 H 1.07990 * 120.12801 * 0.25159 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.5827 -2.5105 1.2363 6 7 0.9013 -2.9415 0.2020 7 7 0.6743 -4.3124 0.4038 8 1 0.1995 -4.9158 -0.1890 9 6 1.2447 -4.6245 1.5861 10 7 1.2586 -5.8748 2.1771 11 16 1.6695 -6.0315 3.7737 12 8 2.8685 -5.2904 3.9540 13 8 1.5562 -7.4137 4.0834 14 6 0.4288 -5.2074 4.7149 15 6 0.5739 -3.8630 5.0220 16 6 -0.3940 -3.2020 5.7621 17 6 -1.5118 -3.8750 6.2001 18 6 -1.6696 -5.2393 5.8943 19 6 -2.8140 -5.9410 6.3385 20 1 -3.3578 -5.5939 7.2046 21 6 -3.2421 -7.0850 5.6556 22 7 -2.8284 -7.3118 4.4354 23 14 -4.4044 -8.2886 6.4865 24 1 -4.7212 -7.8062 7.8548 25 1 -5.6573 -8.3924 5.6962 26 1 -3.7589 -9.6234 6.5687 27 6 -0.6803 -5.9004 5.1428 28 7 1.7907 -3.5316 2.0754 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.0276 -6.6599 1.6564 37 1 1.4476 -3.3270 4.6820 38 1 -0.2704 -2.1548 5.9958 39 1 -2.2649 -3.3580 6.7762 40 1 -3.1254 -8.1045 3.9620 41 1 -0.7891 -6.9485 4.9063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225530882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = 31.700937 kcal Electronic energy + Delta-G solvation = -28725.258665 eV Core-core repulsion = 24667.061939 eV Total energy + Delta-G solvation = -4058.196726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 368.076 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.01608 -37.65185 -36.76467 -35.60600 -35.38125 -34.92184 -33.83491 -32.53623 -30.29575 -30.02124 -29.60796 -27.39435 -25.48019 -23.35283 -22.62777 -21.90749 -21.60708 -21.16637 -19.31123 -19.01004 -17.93831 -17.07594 -16.61050 -16.51184 -16.19410 -15.74220 -15.48503 -15.04543 -14.81181 -14.68171 -14.42246 -13.50889 -13.46754 -13.32548 -12.78342 -12.68780 -12.49903 -12.22696 -12.16809 -11.91046 -11.79092 -11.63437 -11.55420 -11.50415 -11.42326 -11.28676 -11.21229 -11.13925 -10.82506 -10.62701 -10.58578 -10.38651 -9.93478 -9.84034 -9.53946 -9.38085 -9.06893 -8.15248 -7.72647 -7.62699 -6.97348 -4.53759 0.63989 1.10486 1.54555 2.00171 2.12968 2.55562 2.68727 2.79738 2.99793 3.04759 3.07292 3.39756 3.81810 4.04652 4.27274 4.50247 4.58592 4.64320 4.83719 5.05066 5.22390 5.37111 5.39488 5.46725 5.60133 5.68398 5.82576 5.89547 6.01537 6.07461 6.13187 6.33336 6.41043 6.50038 6.82341 6.86751 7.05212 7.12626 7.20004 7.45094 7.67657 7.75698 7.87191 7.98622 8.31864 8.65596 8.69818 10.00625 Molecular weight = 368.08amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003157 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.320660 B = 8866.113920 C = 9554.893337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.134 4.134 4 S 0.032 5.968 5 C 0.236 3.764 6 N -0.316 5.316 7 N -0.490 5.490 8 H 0.441 0.559 9 C 0.545 3.455 10 N -1.013 6.013 11 S 2.680 3.320 12 O -0.929 6.929 13 O -0.952 6.952 14 C -0.640 4.640 15 C -0.131 4.131 16 C -0.112 4.112 17 C -0.175 4.175 18 C 0.087 3.913 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.799 5.799 23 Si 0.911 3.089 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.269 1.269 27 C -0.060 4.060 28 N -0.514 5.514 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.434 0.566 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.283 0.717 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 8.184 -11.261 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.220 4.220 3 C -0.193 4.193 4 S 0.259 5.741 5 C -0.155 4.155 6 N -0.152 5.152 7 N -0.214 5.214 8 H 0.287 0.713 9 C 0.174 3.826 10 N -0.763 5.763 11 S 2.777 3.223 12 O -0.919 6.919 13 O -0.942 6.942 14 C -0.734 4.734 15 C -0.152 4.152 16 C -0.131 4.131 17 C -0.196 4.196 18 C 0.084 3.916 19 C -0.490 4.490 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.425 5.425 23 Si 0.735 3.265 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.194 1.194 27 C -0.082 4.082 28 N -0.252 5.252 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.271 0.729 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.336 8.540 -10.433 14.897 hybrid contribution -2.570 -2.014 -1.289 3.510 sum 3.766 6.526 -11.722 13.935 Atomic orbital electron populations 1.22121 0.92417 1.03882 1.02577 1.23428 1.00222 0.99353 0.99042 1.21611 1.01856 0.92523 1.03262 1.85658 1.68524 0.91143 1.28802 1.25651 0.98267 1.00451 0.91179 1.78265 1.25798 0.88094 1.23060 1.47695 1.46643 1.08599 1.18471 0.71333 1.19797 0.90559 0.87538 0.84688 1.53435 1.82447 1.08480 1.31969 1.02373 0.74985 0.73709 0.71214 1.93590 1.42911 1.72735 1.82669 1.93599 1.87515 1.32112 1.80957 1.29582 1.16521 1.06915 1.20372 1.20259 1.00105 0.92213 1.02620 1.20684 0.94951 0.98096 0.99358 1.21300 0.98367 0.94434 1.05462 1.17653 0.92319 0.90811 0.90855 1.19604 1.09480 1.07852 1.12021 0.89917 1.25932 0.96452 0.97949 0.93965 1.69730 1.38026 1.25426 1.09297 0.86207 0.79531 0.80120 0.80632 1.18260 1.19923 1.19386 1.21220 0.89922 0.99363 0.97659 1.71018 1.27990 0.95898 1.30258 0.91862 0.90974 0.91488 0.88505 0.91442 0.90587 0.91338 0.72926 0.86160 0.88216 0.88208 0.90558 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.06 37.16 0.34 -1.18 16 2 C -0.09 -0.89 3.08 -26.73 -0.08 -0.97 16 3 C -0.13 -0.95 9.20 37.16 0.34 -0.61 16 4 S 0.03 0.42 21.59 -107.50 -2.32 -1.90 16 5 C 0.24 3.88 8.03 -90.96 -0.73 3.15 16 6 N -0.32 -4.74 10.66 30.13 0.32 -4.42 16 7 N -0.49 -6.73 7.46 30.02 0.22 -6.51 16 8 H 0.44 4.27 8.96 -182.36 -1.63 2.64 16 9 C 0.54 9.02 8.75 -320.89 -2.81 6.21 16 10 N -1.01 -15.85 5.84 30.03 0.18 -15.67 16 11 S 2.68 53.26 5.57 -107.50 -0.60 52.66 16 12 O -0.93 -19.99 16.19 -57.17 -0.93 -20.91 16 13 O -0.95 -20.35 17.26 -57.17 -0.99 -21.33 16 14 C -0.64 -14.64 5.89 -39.66 -0.23 -14.87 16 15 C -0.13 -2.94 9.34 -39.29 -0.37 -3.31 16 16 C -0.11 -2.46 10.02 -39.66 -0.40 -2.86 16 17 C -0.18 -4.13 9.80 -38.87 -0.38 -4.51 16 18 C 0.09 2.24 5.57 -106.82 -0.60 1.64 16 19 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 20 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 21 C 0.07 1.80 5.13 -17.34 -0.09 1.71 16 22 N -0.80 -19.54 10.97 55.55 0.61 -18.93 16 23 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 C -0.06 -1.51 8.16 -38.87 -0.32 -1.83 16 28 N -0.51 -9.55 9.40 -14.19 -0.13 -9.69 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.89 6.22 -51.93 -0.32 0.57 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.43 4.96 8.95 -34.48 -0.31 4.65 16 37 H 0.12 2.62 7.13 -52.49 -0.37 2.25 16 38 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 41 H 0.14 3.51 5.72 -52.49 -0.30 3.21 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -32.44 375.13 -14.55 -46.99 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.87 Total: 10.50 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -5.67 Total: -29.45 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 1.20 Total: -55.21 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.91 Total: -42.25 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 53.68 SS G_CDS: -2.92 Total: 50.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.44 -14.55 -46.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225530882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.694 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds