Wall clock time and date at job start Tue Mar 31 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 H 1.08994 * 109.47253 * 184.52219 * 3 2 1 5 5 C 1.53001 * 109.47200 * 304.52482 * 3 2 1 6 6 N 1.46507 * 109.46741 * 301.56772 * 5 3 2 7 7 C 1.34777 * 119.99580 * 182.64520 * 6 5 3 8 8 S 1.71196 * 120.00361 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99589 * 180.02562 * 7 6 5 10 10 C 1.39140 * 120.00153 * 175.27758 * 9 7 6 11 11 C 1.39517 * 119.83527 * 319.00647 * 10 9 7 12 12 C 1.36360 * 120.16855 * 179.75865 * 11 10 9 13 13 C 1.40880 * 119.82660 * 0.51367 * 12 11 10 14 14 C 1.41138 * 120.15666 * 179.71825 * 13 12 11 15 15 H 1.08005 * 119.99905 * 158.30415 * 14 13 12 16 16 C 1.39884 * 120.00154 * 338.30487 * 14 13 12 17 17 N 1.30880 * 120.00084 * 332.01397 * 16 14 13 18 18 Si 1.86808 * 119.99955 * 152.01860 * 16 14 13 19 19 H 1.48500 * 109.47348 * 94.98376 * 18 16 14 20 20 H 1.48495 * 109.46901 * 214.98598 * 18 16 14 21 21 H 1.48500 * 109.47008 * 334.98264 * 18 16 14 22 22 C 1.40869 * 119.67811 * 359.74145 * 13 12 11 23 23 C 1.36352 * 119.83534 * 359.97438 * 22 13 12 24 24 C 1.53000 * 109.46855 * 64.52139 * 3 2 1 25 25 C 1.50702 * 109.47080 * 65.00520 * 24 3 2 26 26 C 1.38226 * 120.00419 * 89.99945 * 25 24 3 27 27 C 1.38236 * 120.00483 * 179.72868 * 26 25 24 28 28 C 1.38242 * 119.99606 * 0.24502 * 27 26 25 29 29 C 1.38238 * 119.99634 * 0.02562 * 28 27 26 30 30 C 1.38228 * 120.00505 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.46801 * 305.63902 * 1 2 3 32 32 H 1.09001 * 109.46578 * 65.63904 * 1 2 3 33 33 H 1.08998 * 109.46832 * 185.63898 * 1 2 3 34 34 H 1.08998 * 109.47409 * 239.99991 * 2 1 3 35 35 H 1.08995 * 109.47000 * 119.99680 * 2 1 3 36 36 H 1.08997 * 109.47281 * 61.56471 * 5 3 2 37 37 H 1.08992 * 109.47392 * 181.57193 * 5 3 2 38 38 H 0.96997 * 119.99963 * 2.64810 * 6 5 3 39 39 H 0.96998 * 120.00377 * 355.27855 * 9 7 6 40 40 H 1.08004 * 119.91340 * 359.97438 * 11 10 9 41 41 H 1.07997 * 120.08284 * 180.25431 * 12 11 10 42 42 H 0.97006 * 120.00159 * 180.02562 * 17 16 14 43 43 H 1.08002 * 120.08170 * 179.97438 * 22 13 12 44 44 H 1.08003 * 119.91817 * 179.97438 * 23 22 13 45 45 H 1.08999 * 109.47433 * 305.00106 * 24 3 2 46 46 H 1.09004 * 109.46932 * 185.00072 * 24 3 2 47 47 H 1.08004 * 120.00133 * 359.97438 * 26 25 24 48 48 H 1.07994 * 120.00286 * 180.27788 * 27 26 25 49 49 H 1.07996 * 119.99851 * 180.02562 * 28 27 26 50 50 H 1.07997 * 119.99375 * 180.02562 * 29 28 27 51 51 H 1.08000 * 120.00502 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 3.1270 1.4436 -0.0810 5 6 1.4393 2.1959 -1.1884 6 7 1.8057 1.5159 -2.4333 7 6 1.4300 2.0336 -3.6197 8 16 0.5253 3.4860 -3.6719 9 7 1.7666 1.4077 -4.7648 10 6 1.2965 1.8868 -5.9836 11 6 -0.0207 2.3335 -6.0924 12 6 -0.4871 2.8090 -7.2823 13 6 0.3618 2.8383 -8.4062 14 6 -0.1154 3.3235 -9.6427 15 1 0.5808 3.6754 -10.3897 16 6 -1.4900 3.3485 -9.9008 17 7 -2.2809 2.4829 -9.3193 18 14 -2.1969 4.6175 -11.0754 19 1 -2.3119 4.0258 -12.4326 20 1 -3.5408 5.0356 -10.6021 21 1 -1.2997 5.7998 -11.1253 22 6 1.6890 2.3806 -8.2901 23 6 2.1430 1.9133 -7.0923 24 6 1.6250 2.1302 1.3022 25 6 2.3149 1.4634 2.4644 26 6 3.5495 1.9180 2.8885 27 6 4.1798 1.3100 3.9581 28 6 3.5777 0.2441 4.6003 29 6 2.3456 -0.2140 4.1725 30 6 1.7154 0.3940 3.1030 31 1 -0.3633 0.5988 0.8352 32 1 -0.3632 0.4239 -0.9362 33 1 -0.3633 -1.0227 0.1010 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.3537 2.2189 -1.0929 37 1 1.8243 3.2155 -1.2046 38 1 2.3185 0.6931 -2.4037 39 1 2.3365 0.6233 -4.7394 40 1 -0.6717 2.3059 -5.2310 41 1 -1.5058 3.1583 -7.3639 42 1 -3.2341 2.5000 -9.4985 43 1 2.3453 2.3998 -9.1476 44 1 3.1602 1.5617 -7.0018 45 1 0.5450 2.0510 1.4268 46 1 1.9103 3.1815 1.2649 47 1 4.0199 2.7507 2.3869 48 1 5.1423 1.6681 4.2923 49 1 4.0699 -0.2306 5.4362 50 1 1.8751 -1.0464 4.6745 51 1 0.7526 0.0363 2.7690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225630849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:37 Heat of formation + Delta-G solvation = 50.114434 kcal Electronic energy + Delta-G solvation = -29160.091911 eV Core-core repulsion = 25342.456236 eV Total energy + Delta-G solvation = -3817.635675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.162 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.10422 -39.16347 -37.98307 -36.47343 -34.48497 -33.10261 -32.05318 -31.20914 -29.70111 -29.51830 -28.84679 -26.42165 -24.94125 -24.51321 -23.41510 -22.91218 -21.81824 -21.15508 -20.64583 -19.54583 -17.99475 -17.35946 -17.30459 -16.98584 -16.24287 -15.63289 -15.47026 -15.34543 -15.10505 -14.84132 -14.50925 -14.24778 -13.95269 -13.75327 -13.56579 -13.30443 -13.10748 -12.80226 -12.70414 -12.47725 -12.30277 -12.12272 -12.06536 -11.90806 -11.42231 -11.35127 -11.24856 -11.12562 -11.08354 -10.95024 -10.82081 -10.79337 -10.54486 -10.50090 -9.92428 -9.55893 -9.24698 -9.14156 -9.01845 -8.95010 -7.68937 -7.46113 -7.05867 -6.89479 -6.25048 -4.31526 1.00627 1.05750 1.76004 2.47754 2.81244 3.06814 3.07855 3.12169 3.17260 3.29185 3.44993 3.89821 4.00810 4.26714 4.40361 4.54308 4.56928 4.61577 4.65069 4.70819 4.81869 5.05387 5.06569 5.15532 5.20720 5.27736 5.37290 5.44808 5.58332 5.67413 5.68539 5.69974 5.71803 5.81781 5.88099 5.93211 6.08557 6.10959 6.15820 6.18589 6.31428 6.32841 6.39911 6.60596 6.67114 6.98562 7.00596 7.13908 7.20875 7.32270 7.59110 7.67294 7.96439 8.04981 8.21192 8.25364 8.60990 8.84343 8.97008 10.03756 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.001587 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.399453 B =17640.652235 C =17851.092371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C -0.095 4.095 4 H 0.076 0.924 5 C 0.134 3.866 6 N -0.697 5.697 7 C 0.543 3.457 8 S -0.646 6.646 9 N -0.590 5.590 10 C -0.046 4.046 11 C -0.032 4.032 12 C -0.174 4.174 13 C 0.122 3.878 14 C -0.454 4.454 15 H 0.082 0.918 16 C 0.083 3.917 17 N -0.767 5.767 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.231 4.231 23 C -0.077 4.077 24 C -0.077 4.077 25 C -0.074 4.074 26 C -0.117 4.117 27 C -0.119 4.119 28 C -0.127 4.127 29 C -0.121 4.121 30 C -0.115 4.115 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.390 0.610 39 H 0.389 0.611 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.284 0.716 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.515 -7.713 23.671 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.161 4.161 3 C -0.114 4.114 4 H 0.095 0.905 5 C 0.010 3.990 6 N -0.330 5.330 7 C 0.185 3.815 8 S -0.518 6.518 9 N -0.208 5.208 10 C -0.138 4.138 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.118 3.882 14 C -0.481 4.481 15 H 0.100 0.900 16 C -0.139 4.139 17 N -0.390 5.390 18 Si 0.725 3.275 19 H -0.195 1.195 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.251 4.251 23 C -0.097 4.097 24 C -0.115 4.115 25 C -0.074 4.074 26 C -0.135 4.135 27 C -0.137 4.137 28 C -0.145 4.145 29 C -0.139 4.139 30 C -0.133 4.133 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.226 0.774 39 H 0.224 0.776 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.595 -6.746 23.692 25.778 hybrid contribution 0.739 -1.064 -0.406 1.357 sum 8.334 -7.810 23.287 25.937 Atomic orbital electron populations 1.21916 0.95373 1.01708 1.02655 1.21625 0.96713 0.95704 1.02037 1.21420 1.00738 0.95523 0.93697 0.90514 1.21647 1.01643 0.96271 0.79444 1.44812 1.56458 1.27374 1.04351 1.22331 0.86649 0.91228 0.81328 1.93267 1.51293 1.12918 1.94311 1.41958 1.47076 1.27471 1.04312 1.16832 0.94792 1.19806 0.82405 1.20481 0.92647 0.95217 0.97030 1.20686 1.00501 1.07030 0.91279 1.17668 0.90850 0.86770 0.92864 1.19602 0.91792 1.36007 1.00746 0.90013 1.25976 0.97318 0.94523 0.96045 1.69909 1.06323 1.27392 1.35337 0.86414 0.79034 0.81978 0.80115 1.19497 1.19769 1.18063 1.20395 0.97904 1.10742 0.96059 1.19960 0.95803 1.00827 0.93143 1.20618 1.00824 0.99337 0.90701 1.19841 0.94884 0.96025 0.96678 1.21103 0.94985 1.00279 0.97169 1.21154 0.99931 0.96421 0.96235 1.21148 0.95848 0.97322 1.00193 1.21158 0.95580 1.00033 0.97089 1.21120 1.00224 0.95983 0.95994 0.92200 0.91925 0.92856 0.92451 0.91124 0.89635 0.89812 0.77428 0.77605 0.87065 0.87043 0.90470 0.88673 0.89591 0.89935 0.90221 0.86039 0.86215 0.86340 0.86232 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.01 37.16 0.33 -0.90 16 2 C -0.12 -0.87 5.14 -26.73 -0.14 -1.01 16 3 C -0.09 -0.70 2.29 -90.62 -0.21 -0.91 16 4 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 5 C 0.13 1.40 4.08 -4.04 -0.02 1.39 16 6 N -0.70 -8.12 5.31 -62.03 -0.33 -8.45 16 7 C 0.54 9.16 7.75 -86.92 -0.67 8.49 16 8 S -0.65 -14.14 24.89 -107.50 -2.68 -16.82 16 9 N -0.59 -10.03 5.29 -11.28 -0.06 -10.09 16 10 C -0.05 -1.00 5.96 -83.59 -0.50 -1.49 16 11 C -0.03 -0.79 7.76 -39.78 -0.31 -1.10 16 12 C -0.17 -4.64 8.70 -39.26 -0.34 -4.98 16 13 C 0.12 3.23 5.58 -106.80 -0.60 2.64 16 14 C -0.45 -11.89 8.97 -37.87 -0.34 -12.23 16 15 H 0.08 2.05 7.98 -52.48 -0.42 1.63 16 16 C 0.08 2.06 4.90 -17.34 -0.09 1.98 16 17 N -0.77 -19.51 11.43 55.54 0.64 -18.88 16 18 Si 0.90 18.39 29.64 -169.99 -5.04 13.35 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.23 -5.56 9.74 -39.27 -0.38 -5.95 16 23 C -0.08 -1.67 9.90 -39.79 -0.39 -2.07 16 24 C -0.08 -0.54 4.70 -27.88 -0.13 -0.67 16 25 C -0.07 -0.55 4.73 -104.62 -0.49 -1.04 16 26 C -0.12 -0.86 9.70 -39.59 -0.38 -1.25 16 27 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 28 C -0.13 -0.86 10.05 -39.58 -0.40 -1.25 16 29 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 30 C -0.12 -0.82 7.87 -39.58 -0.31 -1.13 16 31 H 0.06 0.42 5.84 -51.93 -0.30 0.12 16 32 H 0.06 0.61 6.73 -51.93 -0.35 0.26 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.40 6.86 -51.93 -0.36 0.04 16 35 H 0.07 0.49 5.93 -51.93 -0.31 0.18 16 36 H 0.09 1.01 6.51 -51.93 -0.34 0.67 16 37 H 0.08 1.01 7.89 -51.93 -0.41 0.60 16 38 H 0.39 3.42 7.19 -40.82 -0.29 3.13 16 39 H 0.39 5.08 8.84 -40.82 -0.36 4.72 16 40 H 0.11 2.76 6.10 -45.42 -0.28 2.49 16 41 H 0.11 3.09 6.33 -52.49 -0.33 2.76 16 42 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 43 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.09 1.60 8.06 -52.48 -0.42 1.17 16 45 H 0.08 0.56 6.16 -51.93 -0.32 0.24 16 46 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 48 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 49 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 50 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 51 H 0.12 0.75 7.50 -52.49 -0.39 0.36 16 LS Contribution 415.70 15.07 6.26 6.26 Total: -1.00 -31.26 415.70 -14.76 -46.02 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.40 Total: 12.53 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -6.16 Total: -23.93 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.25 Total: -37.42 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.04 Total: 13.35 kcal Atomic # 16 Polarization: -14.14 SS G_CDS: -2.68 Total: -16.82 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.26 -14.76 -46.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225630849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.135 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds