Wall clock time and date at job start Tue Mar 31 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 S 1.65603 * 120.00110 * 119.99604 * 12 2 1 15 15 O 1.42103 * 106.39984 * 203.54254 * 14 12 2 16 16 O 1.42101 * 106.40348 * 336.46504 * 14 12 2 17 17 N 1.65604 * 107.21689 * 90.00259 * 14 12 2 18 18 C 1.46987 * 121.33535 * 269.72127 * 17 14 12 19 19 C 1.49947 * 109.37222 * 223.16666 * 18 17 14 20 20 C 1.31132 * 123.40502 * 349.28550 * 19 18 17 21 21 C 1.47778 * 117.80763 * 180.62490 * 20 19 18 22 22 C 1.39538 * 120.15136 * 104.74446 * 21 20 19 23 23 C 1.37955 * 119.87829 * 179.72112 * 22 21 20 24 24 C 1.38387 * 120.19504 * 0.55520 * 23 22 21 25 25 C 1.38273 * 120.31180 * 359.72306 * 24 23 22 26 26 C 1.38240 * 120.11923 * 359.97438 * 25 24 23 27 27 F 1.35092 * 120.10443 * 179.97438 * 26 25 24 28 28 C 1.49989 * 124.38001 * 0.64528 * 20 19 18 29 29 C 1.47304 * 121.33442 * 89.99619 * 17 14 12 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 35 35 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 36 36 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 37 37 H 1.09006 * 109.52533 * 343.14841 * 18 17 14 38 38 H 1.09004 * 109.52848 * 103.34078 * 18 17 14 39 39 H 1.07996 * 118.30922 * 169.06822 * 19 18 17 40 40 H 1.07994 * 120.06077 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.90262 * 180.27907 * 23 22 21 42 42 H 1.08003 * 119.84463 * 179.74362 * 24 23 22 43 43 H 1.08006 * 119.94355 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.31260 * 220.69622 * 28 20 19 45 45 H 1.09002 * 109.15501 * 101.17939 * 28 20 19 46 46 H 1.08998 * 109.76774 * 237.34343 * 29 17 14 47 47 H 1.09000 * 109.76545 * 358.12233 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 2.8227 -0.5644 -3.5260 16 8 2.6904 1.4974 -2.1193 17 7 4.5438 -0.1041 -1.8181 18 6 5.2054 0.8341 -0.9002 19 6 6.5919 1.1194 -1.3947 20 6 7.1671 0.4444 -2.3607 21 6 8.5444 0.8220 -2.7403 22 6 9.6218 0.0238 -2.3537 23 6 10.9047 0.3785 -2.7161 24 6 11.1271 1.5294 -3.4518 25 6 10.0660 2.3292 -3.8342 26 6 8.7745 1.9827 -3.4834 27 9 7.7381 2.7646 -3.8567 28 6 6.5203 -0.6850 -3.1063 29 6 5.3382 -1.2430 -2.3096 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 0.7096 1.1617 3.4844 34 1 0.7376 -2.1442 -1.9994 35 1 2.4629 -2.5818 -1.9864 36 1 1.5295 -2.5968 -0.4710 37 1 4.6368 1.7631 -0.8564 38 1 5.2605 0.3925 0.0949 39 1 7.1445 1.9247 -0.9338 40 1 9.4511 -0.8726 -1.7761 41 1 11.7384 -0.2413 -2.4210 42 1 12.1343 1.8039 -3.7289 43 1 10.2464 3.2258 -4.4087 44 1 7.2522 -1.4764 -3.2676 45 1 6.1654 -0.3203 -4.0703 46 1 5.7054 -1.8276 -1.4661 47 1 4.7229 -1.8708 -2.9541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225753708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:22 Heat of formation + Delta-G solvation = -73.498130 kcal Electronic energy + Delta-G solvation = -32220.590136 eV Core-core repulsion = 27830.991898 eV Total energy + Delta-G solvation = -4389.598238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.136 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.95609 -39.54265 -37.98610 -36.74903 -36.13251 -35.24141 -33.66086 -32.61307 -31.08776 -30.82691 -29.76748 -29.08360 -25.52630 -25.19235 -24.99151 -23.62475 -22.84198 -22.14236 -20.73589 -19.17266 -18.12078 -17.56938 -17.17551 -16.71645 -16.46081 -16.42059 -15.96817 -15.73776 -15.41405 -14.94139 -14.76360 -14.49549 -14.24410 -14.13112 -13.54424 -13.44872 -13.32736 -13.16523 -12.81268 -12.70666 -12.58750 -12.33203 -12.08036 -11.99544 -11.86652 -11.79663 -11.57870 -11.40461 -11.34937 -11.22112 -11.20978 -10.97916 -10.88794 -10.57509 -10.45341 -10.22559 -10.08371 -9.35623 -9.30410 -9.01616 -8.81711 -8.61012 -8.50101 -7.95956 -6.11189 -4.20005 0.84844 0.94688 1.18852 2.06524 3.23383 3.29949 3.30046 3.31660 3.43116 4.05300 4.09687 4.33137 4.35673 4.53659 4.67499 4.76132 4.89901 4.96409 5.07201 5.17755 5.19085 5.21095 5.40823 5.47034 5.59430 5.63958 5.73765 5.77567 5.80438 5.84821 5.91586 5.97720 6.04255 6.10524 6.16953 6.18896 6.33417 6.54961 6.62645 6.67427 6.74581 6.85003 6.87984 6.93834 7.11313 7.48911 7.60833 7.76598 8.03584 8.24461 8.83012 9.46340 10.93713 Molecular weight = 368.14amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.003013 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.294227 B = 9289.924286 C =10308.936539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.783 3.217 15 O -0.995 6.995 16 O -0.978 6.978 17 N -1.008 6.008 18 C 0.152 3.848 19 C -0.126 4.126 20 C -0.098 4.098 21 C -0.077 4.077 22 C -0.080 4.080 23 C -0.131 4.131 24 C -0.096 4.096 25 C -0.156 4.156 26 C 0.106 3.894 27 F -0.132 7.132 28 C -0.088 4.088 29 C 0.127 3.873 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.012 0.988 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.805 -2.815 -9.294 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.793 3.207 15 O -0.979 6.979 16 O -0.962 6.962 17 N -0.846 5.846 18 C 0.027 3.973 19 C -0.145 4.145 20 C -0.098 4.098 21 C -0.078 4.078 22 C -0.098 4.098 23 C -0.150 4.150 24 C -0.114 4.114 25 C -0.174 4.174 26 C 0.087 3.913 27 F -0.111 7.111 28 C -0.126 4.126 29 C 0.001 3.999 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.346 -2.154 -9.926 20.101 hybrid contribution 0.385 -0.461 1.206 1.348 sum 17.732 -2.615 -8.720 19.932 Atomic orbital electron populations 1.22056 0.97989 0.99650 1.00748 1.18722 0.91881 0.92691 0.80221 0.92427 1.21331 1.31963 1.13140 0.90129 0.91967 1.24920 0.94947 0.94959 0.98944 1.69869 1.36095 1.22532 1.23932 0.86601 0.79122 0.79687 0.82182 1.20278 1.21267 1.20306 1.57802 1.64165 1.21401 1.39889 1.21171 0.98867 0.82066 1.01791 1.01835 0.72215 0.73453 0.73165 1.93525 1.85894 1.76392 1.42102 1.93567 1.83595 1.32218 1.86780 1.58403 1.30048 1.35264 1.60929 1.20191 0.90525 0.93713 0.92888 1.22724 0.96708 0.98213 0.96883 1.19260 0.91864 0.99729 0.98961 1.19182 0.94784 0.94398 0.99466 1.21190 0.91193 0.99051 0.98376 1.21153 0.97030 0.97467 0.99305 1.21040 0.98604 0.94322 0.97433 1.21106 0.91028 1.01990 1.03312 1.17894 0.84333 0.90478 0.98621 1.91535 1.57158 1.73031 1.89343 1.20645 0.97188 0.95972 0.98820 1.21344 0.92688 0.87913 0.97998 0.88901 0.94887 0.96919 0.92561 0.93923 0.93348 0.90205 0.87605 0.89222 0.86637 0.84842 0.85325 0.85199 0.84791 0.90133 0.90413 0.90886 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.27 6.45 2.62 -69.08 -0.18 6.27 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.53 -13.15 7.99 -34.44 -0.28 -13.43 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.12 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.95 11.32 55.43 0.63 -23.32 16 8 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.99 -20.51 3.12 -115.86 -0.36 -20.87 16 13 C 0.11 1.90 9.28 59.85 0.56 2.46 16 14 S 2.78 55.86 6.12 -107.50 -0.66 55.20 16 15 O -1.00 -20.57 15.95 -57.17 -0.91 -21.49 16 16 O -0.98 -22.66 15.35 -57.17 -0.88 -23.54 16 17 N -1.01 -16.79 3.35 -115.04 -0.39 -17.17 16 18 C 0.15 2.41 6.71 -5.29 -0.04 2.38 16 19 C -0.13 -1.74 9.55 -36.42 -0.35 -2.08 16 20 C -0.10 -1.26 4.88 -102.82 -0.50 -1.76 16 21 C -0.08 -0.89 5.01 -104.95 -0.53 -1.42 16 22 C -0.08 -0.73 9.78 -39.20 -0.38 -1.12 16 23 C -0.13 -1.00 10.03 -39.63 -0.40 -1.40 16 24 C -0.10 -0.73 10.04 -39.51 -0.40 -1.12 16 25 C -0.16 -1.46 10.01 -39.57 -0.40 -1.85 16 26 C 0.11 1.27 7.27 -39.02 -0.28 0.99 16 27 F -0.13 -1.88 16.83 2.25 0.04 -1.84 16 28 C -0.09 -1.07 5.95 -28.18 -0.17 -1.24 16 29 C 0.13 1.69 6.47 -3.56 -0.02 1.67 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 31 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 36 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 37 H 0.11 1.83 6.97 -51.93 -0.36 1.47 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.12 1.46 7.94 -52.49 -0.42 1.04 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 44 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.19 7.12 -51.93 -0.37 0.82 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -31.22 396.98 -11.43 -42.64 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.74 Total: 2.64 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -3.12 Total: -13.18 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.12 Total: -61.37 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.79 Total: -45.03 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 55.86 SS G_CDS: -0.66 Total: 55.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.22 -11.43 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225753708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.854 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds