Wall clock time and date at job start Tue Mar 31 2020 05:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99684 * 2 1 4 4 S 1.65600 * 120.00175 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.40040 * 336.46408 * 4 2 1 6 6 O 1.42101 * 106.40227 * 203.54625 * 4 2 1 7 7 N 1.65593 * 107.21708 * 90.00338 * 4 2 1 8 8 C 1.36937 * 120.00081 * 89.99992 * 7 4 2 9 9 H 1.08008 * 120.00011 * 37.35560 * 8 7 4 10 10 C 1.38809 * 120.00192 * 217.63168 * 8 7 4 11 11 N 1.31623 * 120.00060 * 213.77398 * 10 8 7 12 12 Si 1.86796 * 119.99961 * 33.77150 * 10 8 7 13 13 H 1.48502 * 109.47119 * 95.12561 * 12 10 8 14 14 H 1.48503 * 109.46863 * 215.11937 * 12 10 8 15 15 H 1.48497 * 109.47399 * 335.12091 * 12 10 8 16 16 C 1.46498 * 120.00277 * 269.99679 * 7 4 2 17 17 C 1.50699 * 109.47296 * 261.86894 * 16 7 4 18 18 C 1.33362 * 125.19200 * 87.45776 * 17 16 7 19 19 C 1.38450 * 114.92671 * 179.83145 * 18 17 16 20 20 C 1.33474 * 114.89434 * 0.45722 * 19 18 17 21 21 Br 1.89099 * 125.20900 * 179.75379 * 20 19 18 22 22 S 1.75877 * 125.19197 * 267.75924 * 17 16 7 23 23 H 1.08995 * 109.47380 * 270.00502 * 1 2 3 24 24 H 1.08997 * 109.47159 * 30.01046 * 1 2 3 25 25 H 1.09005 * 109.46471 * 150.00415 * 1 2 3 26 26 H 1.09003 * 109.46949 * 239.99514 * 3 2 1 27 27 H 1.09006 * 109.47207 * 359.97438 * 3 2 1 28 28 H 1.08993 * 109.47467 * 119.99413 * 3 2 1 29 29 H 0.97000 * 120.00118 * 179.97438 * 11 10 8 30 30 H 1.09007 * 109.46934 * 21.86887 * 16 7 4 31 31 H 1.09001 * 109.47034 * 141.86531 * 16 7 4 32 32 H 1.08004 * 122.53847 * 0.02562 * 18 17 16 33 33 H 1.08004 * 122.55325 * 180.23439 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5454 6 8 3.5760 -1.1565 0.5451 7 7 2.5383 -1.8592 -1.5809 8 6 3.6666 -1.4420 -2.2350 9 1 4.6093 -1.3957 -1.7099 10 6 3.5978 -1.0732 -3.5714 11 7 4.6156 -1.3082 -4.3723 12 14 2.0608 -0.2434 -4.2334 13 1 2.2428 1.2301 -4.2057 14 1 1.8218 -0.6864 -5.6305 15 1 0.8959 -0.6143 -3.3904 16 6 1.5481 -2.6817 -2.2803 17 6 1.9931 -4.1215 -2.2695 18 6 1.7284 -5.0006 -1.3022 19 6 2.2389 -6.2703 -1.5120 20 6 2.9267 -6.4190 -2.6461 21 35 3.7527 -8.0210 -3.2182 22 16 2.9472 -4.8969 -3.5272 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3632 -0.8901 -0.5138 26 1 2.8242 1.3265 -0.8900 27 1 1.4891 2.0973 -0.0005 28 1 2.8240 1.3266 0.8900 29 1 4.5674 -1.0508 -5.3062 30 1 0.5843 -2.5956 -1.7783 31 1 1.4530 -2.3385 -3.3105 32 1 1.1563 -4.7424 -0.4233 33 1 2.0948 -7.0779 -0.8095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225826902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:56 Heat of formation + Delta-G solvation = -17.397398 kcal Electronic energy + Delta-G solvation = -21919.937172 eV Core-core repulsion = 18474.625001 eV Total energy + Delta-G solvation = -3445.312170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 367.965 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -37.77650 -36.18335 -35.82708 -35.38407 -34.72474 -32.38924 -31.43856 -29.07913 -27.60701 -25.52917 -24.22820 -23.86387 -22.53404 -18.92152 -18.43341 -17.56263 -17.31292 -16.47529 -16.23259 -15.59381 -15.10272 -14.98720 -14.06649 -13.70086 -13.43714 -13.05718 -12.97603 -12.79687 -12.59236 -12.43952 -12.39196 -12.20339 -11.69614 -11.65926 -11.22020 -11.14500 -10.93470 -10.82848 -10.73528 -10.63727 -10.50577 -10.33035 -10.05108 -9.99443 -9.22273 -8.46837 -8.28027 -8.14106 -7.96455 -6.75515 -4.15380 1.13964 1.47672 1.65905 2.21306 2.45584 2.93916 3.06199 3.07006 3.13208 3.81298 3.96541 4.45293 4.62272 5.23595 5.26328 5.33788 5.55382 5.69312 5.74872 5.78177 5.84519 5.97950 6.04245 6.06303 6.24436 6.39256 6.48726 6.65910 6.69404 6.86946 7.20720 7.39435 8.21210 8.84652 8.90363 10.31352 Molecular weight = 367.97amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.004180 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.405159 B = 6697.394983 C = 7690.881438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -1.026 6.026 3 C 0.098 3.902 4 S 2.685 3.315 5 O -1.012 7.012 6 O -0.984 6.984 7 N -0.839 5.839 8 C -0.291 4.291 9 H 0.117 0.883 10 C 0.082 3.918 11 N -0.809 5.809 12 Si 0.840 3.160 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.253 1.253 16 C 0.194 3.806 17 C -0.151 4.151 18 C -0.146 4.146 19 C -0.090 4.090 20 C -0.230 4.230 21 Br -0.014 7.014 22 S 0.205 5.795 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.279 0.721 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -5.502 -0.315 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.862 5.862 3 C -0.048 4.048 4 S 2.709 3.291 5 O -0.996 6.996 6 O -0.968 6.968 7 N -0.667 5.667 8 C -0.434 4.434 9 H 0.134 0.866 10 C -0.134 4.134 11 N -0.443 5.443 12 Si 0.664 3.336 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.177 1.177 16 C 0.065 3.935 17 C -0.273 4.273 18 C -0.178 4.178 19 C -0.125 4.125 20 C -0.427 4.427 21 Br 0.069 6.931 22 S 0.469 5.531 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.634 -6.023 -1.102 8.321 hybrid contribution -1.560 0.776 0.726 1.887 sum -7.194 -5.247 -0.376 8.912 Atomic orbital electron populations 1.21277 0.80724 1.01854 1.00619 1.58781 1.13900 1.23116 1.90367 1.21357 0.96056 0.85535 1.01837 1.07503 0.72749 0.72697 0.76146 1.93400 1.67056 1.60004 1.79155 1.93448 1.40444 1.84800 1.78103 1.53863 1.26810 1.53915 1.32137 1.18970 0.86371 1.43580 0.94462 0.86591 1.25603 0.96761 0.94844 0.96197 1.70017 1.32027 1.36727 1.05490 0.87530 0.85214 0.81784 0.79114 1.19712 1.20236 1.17668 1.19918 0.91081 0.83549 0.98971 1.25226 1.02951 1.00380 0.98766 1.20216 1.04722 0.91872 1.00940 1.20086 0.97961 0.98366 0.96102 1.26143 1.13029 0.98102 1.05444 1.96578 1.79750 1.26901 1.89839 1.84683 1.50548 0.96510 1.21313 0.93783 0.92306 0.92011 0.92019 0.92047 0.92729 0.91032 0.89577 0.90896 0.82804 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 10.26 59.85 0.61 2.12 16 2 N -1.03 -18.76 3.64 -129.20 -0.47 -19.23 16 3 C 0.10 1.61 10.30 59.85 0.62 2.23 16 4 S 2.69 58.70 5.98 -107.50 -0.64 58.06 16 5 O -1.01 -22.28 15.33 -57.17 -0.88 -23.16 16 6 O -0.98 -24.71 16.23 -57.17 -0.93 -25.64 16 7 N -0.84 -18.48 2.49 -61.08 -0.15 -18.63 16 8 C -0.29 -7.10 9.34 -15.06 -0.14 -7.24 16 9 H 0.12 3.17 7.61 -52.48 -0.40 2.77 16 10 C 0.08 1.94 5.11 -17.43 -0.09 1.85 16 11 N -0.81 -20.03 13.97 55.49 0.78 -19.25 16 12 Si 0.84 17.40 26.29 -169.99 -4.47 12.93 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.25 -4.83 5.86 56.52 0.33 -4.50 16 16 C 0.19 3.81 4.55 -5.20 -0.02 3.79 16 17 C -0.15 -2.92 6.02 -36.01 -0.22 -3.13 16 18 C -0.15 -2.63 10.00 -41.21 -0.41 -3.04 16 19 C -0.09 -1.48 10.11 -41.17 -0.42 -1.90 16 20 C -0.23 -3.87 6.97 29.07 0.20 -3.67 16 21 Br -0.01 -0.20 34.07 -68.01 -2.32 -2.52 16 22 S 0.20 3.82 23.33 -107.50 -2.51 1.31 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 25 H 0.06 0.90 7.51 -51.93 -0.39 0.51 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.80 7.79 -51.93 -0.40 0.39 16 28 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 29 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 30 H 0.09 1.50 7.22 -51.92 -0.37 1.12 16 31 H 0.07 1.42 4.07 -51.93 -0.21 1.21 16 32 H 0.15 2.74 7.31 -52.48 -0.38 2.36 16 33 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -27.73 324.17 -10.03 -37.76 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.46 Total: 2.48 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 0.13 Total: -8.99 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.15 Total: -57.12 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.80 Total: -48.80 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -4.47 Total: 12.93 kcal Atomic # 16 Polarization: 62.52 SS G_CDS: -3.15 Total: 59.37 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.32 Total: -2.52 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.73 -10.03 -37.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225826902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.364 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds