Wall clock time and date at job start Tue Mar 31 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99684 * 2 1 4 4 S 1.65600 * 120.00175 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.40040 * 336.46408 * 4 2 1 6 6 O 1.42101 * 106.40227 * 203.54625 * 4 2 1 7 7 N 1.65593 * 107.21708 * 90.00338 * 4 2 1 8 8 C 1.36937 * 120.00081 * 89.99992 * 7 4 2 9 9 H 1.08008 * 120.00011 * 37.35560 * 8 7 4 10 10 C 1.38809 * 120.00192 * 217.63168 * 8 7 4 11 11 N 1.31623 * 120.00060 * 213.77398 * 10 8 7 12 12 Si 1.86796 * 119.99961 * 33.77150 * 10 8 7 13 13 H 1.48502 * 109.47119 * 95.12561 * 12 10 8 14 14 H 1.48503 * 109.46863 * 215.11937 * 12 10 8 15 15 H 1.48497 * 109.47399 * 335.12091 * 12 10 8 16 16 C 1.46498 * 120.00277 * 269.99679 * 7 4 2 17 17 C 1.50699 * 109.47296 * 261.86894 * 16 7 4 18 18 C 1.33362 * 125.19200 * 87.45776 * 17 16 7 19 19 C 1.38450 * 114.92671 * 179.83145 * 18 17 16 20 20 C 1.33474 * 114.89434 * 0.45722 * 19 18 17 21 21 Br 1.89099 * 125.20900 * 179.75379 * 20 19 18 22 22 S 1.75877 * 125.19197 * 267.75924 * 17 16 7 23 23 H 1.08995 * 109.47380 * 270.00502 * 1 2 3 24 24 H 1.08997 * 109.47159 * 30.01046 * 1 2 3 25 25 H 1.09005 * 109.46471 * 150.00415 * 1 2 3 26 26 H 1.09003 * 109.46949 * 239.99514 * 3 2 1 27 27 H 1.09006 * 109.47207 * 359.97438 * 3 2 1 28 28 H 1.08993 * 109.47467 * 119.99413 * 3 2 1 29 29 H 0.97000 * 120.00118 * 179.97438 * 11 10 8 30 30 H 1.09007 * 109.46934 * 21.86887 * 16 7 4 31 31 H 1.09001 * 109.47034 * 141.86531 * 16 7 4 32 32 H 1.08004 * 122.53847 * 0.02562 * 18 17 16 33 33 H 1.08004 * 122.55325 * 180.23439 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5454 6 8 3.5760 -1.1565 0.5451 7 7 2.5383 -1.8592 -1.5809 8 6 3.6666 -1.4420 -2.2350 9 1 4.6093 -1.3957 -1.7099 10 6 3.5978 -1.0732 -3.5714 11 7 4.6156 -1.3082 -4.3723 12 14 2.0608 -0.2434 -4.2334 13 1 2.2428 1.2301 -4.2057 14 1 1.8218 -0.6864 -5.6305 15 1 0.8959 -0.6143 -3.3904 16 6 1.5481 -2.6817 -2.2803 17 6 1.9931 -4.1215 -2.2695 18 6 1.7284 -5.0006 -1.3022 19 6 2.2389 -6.2703 -1.5120 20 6 2.9267 -6.4190 -2.6461 21 35 3.7527 -8.0210 -3.2182 22 16 2.9472 -4.8969 -3.5272 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3632 -0.8901 -0.5138 26 1 2.8242 1.3265 -0.8900 27 1 1.4891 2.0973 -0.0005 28 1 2.8240 1.3266 0.8900 29 1 4.5674 -1.0508 -5.3062 30 1 0.5843 -2.5956 -1.7783 31 1 1.4530 -2.3385 -3.3105 32 1 1.1563 -4.7424 -0.4233 33 1 2.0948 -7.0779 -0.8095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225826902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:55 Heat of formation + Delta-G solvation = -35.391378 kcal Electronic energy + Delta-G solvation = -21920.717449 eV Core-core repulsion = 18474.625001 eV Total energy + Delta-G solvation = -3446.092448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 367.965 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.21806 -38.03174 -37.41621 -36.80925 -36.58619 -34.08658 -32.81877 -30.53528 -28.85428 -27.07075 -25.87825 -25.29210 -23.96943 -20.45180 -20.04980 -19.16529 -18.91649 -18.17228 -17.77062 -17.25641 -16.65353 -16.39134 -15.41797 -15.28940 -14.99322 -14.71974 -14.44665 -14.37127 -14.03030 -13.90962 -13.76919 -13.44617 -13.21467 -13.11328 -12.95768 -12.83815 -12.55994 -12.53100 -12.29059 -12.26904 -11.88105 -11.76862 -11.56285 -11.25588 -10.92842 -10.07886 -9.85255 -9.52606 -9.40644 -8.52067 -6.00253 -0.32338 0.03074 0.14296 0.85750 1.03907 1.30313 1.42556 1.46397 1.67756 2.21000 2.28352 2.76831 2.86101 3.60785 3.83220 4.02505 4.08912 4.33426 4.45579 4.55298 4.59774 4.60625 4.80507 4.92305 4.97395 4.99175 5.09410 5.19292 5.24288 5.46527 5.62710 5.83783 6.30639 7.03715 7.13065 8.59598 Molecular weight = 367.97amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.004180 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.405159 B = 6697.394983 C = 7690.881438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.027 6.027 3 C 0.091 3.909 4 S 2.724 3.276 5 O -1.011 7.011 6 O -1.021 7.021 7 N -0.850 5.850 8 C -0.314 4.314 9 H 0.066 0.934 10 C 0.055 3.945 11 N -0.856 5.856 12 Si 0.885 3.115 13 H -0.272 1.272 14 H -0.277 1.277 15 H -0.224 1.224 16 C 0.185 3.815 17 C -0.171 4.171 18 C -0.143 4.143 19 C -0.089 4.089 20 C -0.228 4.228 21 Br 0.013 6.987 22 S 0.164 5.836 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.281 0.719 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 -5.436 0.595 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.866 5.866 3 C -0.054 4.054 4 S 2.744 3.256 5 O -0.995 6.995 6 O -1.006 7.006 7 N -0.680 5.680 8 C -0.452 4.452 9 H 0.084 0.916 10 C -0.157 4.157 11 N -0.491 5.491 12 Si 0.707 3.293 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.147 1.147 16 C 0.057 3.943 17 C -0.293 4.293 18 C -0.175 4.175 19 C -0.123 4.123 20 C -0.425 4.425 21 Br 0.096 6.904 22 S 0.428 5.572 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.176 0.824 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.366 -5.972 -0.252 10.282 hybrid contribution -0.767 0.675 0.650 1.211 sum -9.133 -5.296 0.399 10.565 Atomic orbital electron populations 1.21645 0.77868 1.03742 1.02415 1.58265 1.15818 1.22439 1.90084 1.21532 0.96991 0.85816 1.01066 1.05137 0.72085 0.73220 0.75157 1.93414 1.66837 1.60355 1.78861 1.93420 1.42798 1.85619 1.78743 1.53584 1.27277 1.55661 1.31491 1.18311 0.85826 1.46125 0.94923 0.91639 1.25932 0.99260 0.94672 0.95833 1.70093 1.34514 1.38631 1.05848 0.86798 0.83124 0.80506 0.78908 1.19746 1.20225 1.14671 1.20154 0.91469 0.83511 0.99162 1.25262 1.03944 1.00642 0.99436 1.20393 1.04260 0.92338 1.00493 1.20360 0.97088 0.98546 0.96318 1.26300 1.12858 0.98237 1.05153 1.96599 1.79330 1.24731 1.89712 1.84800 1.51485 0.98422 1.22444 0.92084 0.89067 0.91639 0.93498 0.87664 0.93056 0.90890 0.87121 0.90859 0.82365 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.21 10.26 127.77 1.31 3.52 16 2 N -1.03 -34.60 3.64 -562.68 -2.05 -36.65 16 3 C 0.09 2.77 10.30 127.77 1.32 4.09 16 4 S 2.72 116.04 5.98 -56.49 -0.34 115.71 16 5 O -1.01 -42.24 15.33 -128.00 -1.96 -44.20 16 6 O -1.02 -51.85 16.23 -128.00 -2.08 -53.92 16 7 N -0.85 -37.30 2.49 -347.17 -0.87 -38.16 16 8 C -0.31 -15.85 9.34 84.03 0.79 -15.07 16 9 H 0.07 3.88 7.61 -2.91 -0.02 3.85 16 10 C 0.06 2.69 5.11 84.86 0.43 3.12 16 11 N -0.86 -44.41 13.97 21.65 0.30 -44.11 16 12 Si 0.88 35.36 26.29 68.60 1.80 37.16 16 13 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 14 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 15 H -0.22 -7.80 5.86 99.48 0.58 -7.22 16 16 C 0.18 7.07 4.55 85.63 0.39 7.46 16 17 C -0.17 -6.52 6.02 24.58 0.15 -6.37 16 18 C -0.14 -4.94 10.00 21.22 0.21 -4.73 16 19 C -0.09 -2.76 10.11 21.24 0.21 -2.54 16 20 C -0.23 -7.46 6.97 66.74 0.46 -6.99 16 21 Br 0.01 0.35 34.07 -20.37 -0.69 -0.34 16 22 S 0.16 6.18 23.33 -56.49 -1.32 4.86 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.09 1.75 7.92 -2.39 -0.02 1.73 16 25 H 0.06 1.61 7.51 -2.38 -0.02 1.59 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.10 2.28 7.79 -2.38 -0.02 2.26 16 28 H 0.05 1.59 8.01 -2.39 -0.02 1.57 16 29 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 30 H 0.11 3.57 7.22 -2.38 -0.02 3.55 16 31 H 0.07 2.78 4.07 -2.39 -0.01 2.77 16 32 H 0.16 5.30 7.31 -2.91 -0.02 5.28 16 33 H 0.17 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -61.45 324.17 -0.90 -62.36 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.02 Total: 14.81 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.28 Total: -17.50 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -2.61 Total: -118.92 kcal Atomic # 8 Polarization: -94.08 SS G_CDS: -4.04 Total: -98.12 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 1.80 Total: 37.16 kcal Atomic # 16 Polarization: 122.23 SS G_CDS: -1.66 Total: 120.57 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -0.69 Total: -0.34 kcal Total: -61.45 -0.90 -62.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225826902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.965 kcal (2) G-P(sol) polarization free energy of solvation -61.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds