Wall clock time and date at job start Tue Mar 31 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86805 * 119.99916 * 2 1 4 4 H 1.48498 * 109.46861 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46863 * 299.99705 * 3 2 1 6 6 H 1.48501 * 109.47001 * 59.99638 * 3 2 1 7 7 C 1.39916 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 175.56077 * 7 2 1 9 9 C 1.41134 * 119.99829 * 355.55536 * 7 2 1 10 10 C 1.40880 * 120.16330 * 214.78811 * 9 7 2 11 11 C 1.36358 * 119.83219 * 180.02562 * 10 9 7 12 12 C 1.39517 * 120.16324 * 0.02562 * 11 10 9 13 13 N 1.39119 * 119.83320 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99645 * 35.30550 * 13 12 11 15 15 O 1.21501 * 120.00382 * 355.70989 * 14 13 12 16 16 C 1.48294 * 119.99672 * 175.71201 * 14 13 12 17 17 C 1.41920 * 126.84888 * 179.97438 * 16 14 13 18 18 C 1.36719 * 103.81920 * 179.97438 * 17 16 14 19 19 C 1.47835 * 126.81400 * 179.97438 * 18 17 16 20 20 C 1.39581 * 120.12649 * 179.97438 * 19 18 17 21 21 C 1.37931 * 119.86697 * 180.02562 * 20 19 18 22 22 C 1.38482 * 120.13006 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 119.86790 * 179.97438 * 22 21 20 24 24 C 1.38488 * 120.26291 * 0.25138 * 22 21 20 25 25 C 1.37929 * 120.12654 * 359.44937 * 24 22 21 26 26 O 1.34462 * 106.36556 * 0.23616 * 18 17 16 27 27 N 1.20872 * 111.74685 * 359.56974 * 26 18 17 28 28 C 1.39513 * 120.33026 * 0.25556 * 12 11 10 29 29 C 1.36360 * 120.16444 * 359.44038 * 28 12 11 30 30 H 0.96999 * 119.99999 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.08652 * 359.97438 * 10 9 7 32 32 H 1.07997 * 119.91900 * 179.97438 * 11 10 9 33 33 H 0.97000 * 119.99786 * 215.30405 * 13 12 11 34 34 H 1.08007 * 128.08827 * 0.02562 * 17 16 14 35 35 H 1.08005 * 120.06444 * 0.03693 * 20 19 18 36 36 H 1.08004 * 119.93357 * 179.97438 * 21 20 19 37 37 H 1.07995 * 119.93058 * 179.70581 * 24 22 21 38 38 H 1.07998 * 120.06315 * 180.27319 * 25 24 22 39 39 H 1.07997 * 119.92072 * 179.70682 * 28 12 11 40 40 H 1.07997 * 120.08454 * 180.27639 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8838 2.3965 1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0858 -1.2130 -0.0729 9 6 1.3058 -2.4321 0.0936 10 6 1.8652 -3.5185 0.7948 11 6 1.1808 -4.6948 0.8811 12 6 -0.0700 -4.8241 0.2767 13 7 -0.7620 -6.0275 0.3687 14 6 -0.6805 -6.7675 1.4921 15 8 0.0577 -6.4237 2.3938 16 6 -1.4918 -8.0014 1.6276 17 6 -1.5191 -8.8843 2.7384 18 6 -2.4144 -9.8486 2.3671 19 6 -2.8269 -11.0266 3.1593 20 6 -3.7582 -11.9281 2.6412 21 6 -4.1396 -13.0251 3.3852 22 6 -3.6010 -13.2327 4.6440 23 17 -4.0865 -14.6154 5.5748 24 6 -2.6810 -12.3387 5.1656 25 6 -2.2873 -11.2414 4.4284 26 8 -2.8408 -9.5159 1.1361 27 7 -2.3274 -8.4937 0.7453 28 6 -0.6277 -3.7545 -0.4242 29 6 0.0421 -2.5702 -0.5137 30 1 -0.4850 0.8400 -0.0004 31 1 2.8339 -3.4203 1.2620 32 1 1.6085 -5.5287 1.4178 33 1 -1.3031 -6.3339 -0.3758 34 1 -0.9633 -8.8111 3.6615 35 1 -4.1790 -11.7670 1.6597 36 1 -4.8604 -13.7232 2.9856 37 1 -2.2680 -12.5032 6.1498 38 1 -1.5664 -10.5472 4.8344 39 1 -1.5943 -3.8634 -0.8935 40 1 -0.3928 -1.7416 -1.0529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225898842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:11 Heat of formation + Delta-G solvation = 70.479130 kcal Electronic energy + Delta-G solvation = -27503.737895 eV Core-core repulsion = 23277.442309 eV Total energy + Delta-G solvation = -4226.295586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.071 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.26659 -39.82350 -39.72369 -37.34475 -37.04916 -34.62159 -34.30646 -33.52202 -32.85042 -31.73156 -29.88725 -29.63402 -28.99964 -25.91064 -24.33794 -24.21257 -23.12770 -22.36892 -21.53117 -20.75305 -19.66955 -18.69525 -18.03132 -17.41483 -17.29157 -16.84502 -16.50322 -15.91294 -15.60081 -15.21424 -14.70120 -14.54457 -14.21377 -14.12983 -14.04185 -13.91729 -13.85458 -13.09957 -12.74247 -12.52270 -12.32548 -12.20516 -12.11719 -11.84437 -11.73241 -11.44207 -11.36942 -11.23386 -11.07977 -10.81078 -10.61407 -10.47176 -10.20874 -9.69635 -9.64954 -9.53825 -9.31679 -8.99577 -8.78357 -7.61514 -6.95110 -6.67542 -4.40098 -0.02610 0.68311 1.09844 1.55835 1.63354 2.47571 2.59971 3.03713 3.05283 3.07998 3.09369 3.13250 3.19424 3.49496 3.81340 3.94233 4.10363 4.25357 4.28232 4.59832 4.64654 4.67567 4.73259 4.95715 4.99454 5.15607 5.32904 5.51605 5.59669 5.60123 5.64138 5.76753 6.07416 6.14318 6.35808 6.63339 6.82251 6.99760 7.11610 7.22081 7.57287 7.59871 7.70594 7.81286 8.00274 8.14626 8.24603 8.47922 8.60425 8.86816 8.92565 10.23347 Molecular weight = 368.07amu Principal moments of inertia in cm(-1) A = 0.034521 B = 0.001385 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.906248 B =20217.140184 C =20614.747056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.082 4.082 12 C -0.006 4.006 13 N -0.628 5.628 14 C 0.577 3.423 15 O -0.512 6.512 16 C -0.010 4.010 17 C -0.158 4.158 18 C -0.003 4.003 19 C -0.012 4.012 20 C -0.082 4.082 21 C -0.108 4.108 22 C -0.025 4.025 23 Cl -0.065 7.065 24 C -0.106 4.106 25 C -0.077 4.077 26 O 0.129 5.871 27 N -0.328 5.328 28 C -0.114 4.114 29 C -0.141 4.141 30 H 0.278 0.722 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.402 0.598 34 H 0.185 0.815 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 -24.671 6.741 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.100 3.900 10 C -0.226 4.226 11 C -0.102 4.102 12 C -0.098 4.098 13 N -0.270 5.270 14 C 0.361 3.639 15 O -0.386 6.386 16 C -0.169 4.169 17 C -0.180 4.180 18 C -0.066 4.066 19 C -0.013 4.013 20 C -0.100 4.100 21 C -0.126 4.126 22 C -0.052 4.052 23 Cl -0.036 7.036 24 C -0.125 4.125 25 C -0.096 4.096 26 O 0.052 5.948 27 N -0.028 5.028 28 C -0.134 4.134 29 C -0.161 4.161 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.237 0.763 34 H 0.202 0.798 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.111 0.889 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.546 -23.889 6.240 26.472 hybrid contribution 0.201 0.438 0.547 0.729 sum -9.344 -23.451 6.787 26.141 Atomic orbital electron populations 1.69762 1.07342 1.28772 1.37702 1.25909 0.94953 1.01286 0.92476 0.86128 0.80609 0.80705 0.78446 1.18514 1.19942 1.19932 1.19567 0.94864 0.90169 1.44252 0.90402 1.17765 0.92232 0.92042 0.87988 1.20801 1.01303 0.94826 1.05627 1.20397 0.92606 0.97896 0.99286 1.17250 0.94479 0.85470 1.12625 1.42796 1.47817 1.20923 1.15489 1.16859 0.82317 0.81516 0.83188 1.90796 1.38286 1.69444 1.40119 1.23618 1.00171 1.00065 0.93019 1.22643 1.00865 0.93134 1.01328 1.22299 0.99156 0.97958 0.87147 1.17639 0.98660 0.91682 0.93328 1.21284 0.95653 0.92765 1.00343 1.21020 1.00506 0.98374 0.92720 1.21153 0.99200 0.91189 0.93699 1.98395 1.90724 1.41593 1.72891 1.20995 0.97038 0.93535 1.00900 1.21131 0.98987 0.97254 0.92240 1.84850 1.51792 1.30821 1.27377 1.74163 1.09644 0.97139 1.21837 1.20322 0.98384 0.92980 1.01758 1.21198 0.97287 0.95506 1.02127 0.91074 0.88380 0.87404 0.76345 0.79779 0.83838 0.84111 0.83964 0.83946 0.88913 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.84 10.60 55.55 0.59 -20.25 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.78 29.56 -169.99 -5.03 13.75 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.46 -12.07 9.02 -37.86 -0.34 -12.41 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 10 C -0.21 -5.15 9.74 -39.26 -0.38 -5.53 16 11 C -0.08 -1.95 8.61 -39.78 -0.34 -2.30 16 12 C -0.01 -0.14 6.30 -83.60 -0.53 -0.67 16 13 N -0.63 -11.79 5.30 -10.47 -0.06 -11.85 16 14 C 0.58 10.67 7.68 -12.13 -0.09 10.57 16 15 O -0.51 -10.94 14.36 5.37 0.08 -10.86 16 16 C -0.01 -0.15 7.18 -82.63 -0.59 -0.74 16 17 C -0.16 -1.83 10.34 -38.72 -0.40 -2.23 16 18 C 0.00 -0.03 7.15 -36.21 -0.26 -0.29 16 19 C -0.01 -0.09 5.87 -104.97 -0.62 -0.71 16 20 C -0.08 -0.51 9.73 -39.19 -0.38 -0.90 16 21 C -0.11 -0.61 9.81 -39.60 -0.39 -1.00 16 22 C -0.03 -0.16 6.33 -39.40 -0.25 -0.41 16 23 Cl -0.07 -0.40 28.95 -51.86 -1.50 -1.90 16 24 C -0.11 -0.62 9.81 -39.60 -0.39 -1.01 16 25 C -0.08 -0.49 9.58 -39.20 -0.38 -0.87 16 26 O 0.13 1.45 11.01 16.05 0.18 1.62 16 27 N -0.33 -4.46 11.82 33.35 0.39 -4.06 16 28 C -0.11 -2.63 9.90 -39.78 -0.39 -3.02 16 29 C -0.14 -3.61 8.61 -39.26 -0.34 -3.95 16 30 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 31 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.11 2.51 6.22 -52.49 -0.33 2.18 16 33 H 0.40 6.47 8.57 -40.82 -0.35 6.12 16 34 H 0.18 1.77 7.46 -52.48 -0.39 1.38 16 35 H 0.14 0.70 7.96 -52.48 -0.42 0.28 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.70 7.15 -52.49 -0.38 0.33 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.13 3.50 6.13 -52.49 -0.32 3.18 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -29.99 371.42 -9.93 -39.91 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.42 Total: 9.71 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -6.76 Total: -21.68 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.93 Total: -36.16 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.25 Total: -9.24 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.99 -9.93 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225898842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.392 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds