Wall clock time and date at job start Tue Mar 31 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86805 * 119.99916 * 2 1 4 4 H 1.48498 * 109.46861 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46863 * 299.99705 * 3 2 1 6 6 H 1.48501 * 109.47001 * 59.99638 * 3 2 1 7 7 C 1.39916 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 175.56077 * 7 2 1 9 9 C 1.41134 * 119.99829 * 355.55536 * 7 2 1 10 10 C 1.40880 * 120.16330 * 214.78811 * 9 7 2 11 11 C 1.36358 * 119.83219 * 180.02562 * 10 9 7 12 12 C 1.39517 * 120.16324 * 0.02562 * 11 10 9 13 13 N 1.39119 * 119.83320 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99645 * 35.30550 * 13 12 11 15 15 O 1.21501 * 120.00382 * 355.70989 * 14 13 12 16 16 C 1.48294 * 119.99672 * 175.71201 * 14 13 12 17 17 C 1.41920 * 126.84888 * 179.97438 * 16 14 13 18 18 C 1.36719 * 103.81920 * 179.97438 * 17 16 14 19 19 C 1.47835 * 126.81400 * 179.97438 * 18 17 16 20 20 C 1.39581 * 120.12649 * 179.97438 * 19 18 17 21 21 C 1.37931 * 119.86697 * 180.02562 * 20 19 18 22 22 C 1.38482 * 120.13006 * 0.02562 * 21 20 19 23 23 Cl 1.73601 * 119.86790 * 179.97438 * 22 21 20 24 24 C 1.38488 * 120.26291 * 0.25138 * 22 21 20 25 25 C 1.37929 * 120.12654 * 359.44937 * 24 22 21 26 26 O 1.34462 * 106.36556 * 0.23616 * 18 17 16 27 27 N 1.20872 * 111.74685 * 359.56974 * 26 18 17 28 28 C 1.39513 * 120.33026 * 0.25556 * 12 11 10 29 29 C 1.36360 * 120.16444 * 359.44038 * 28 12 11 30 30 H 0.96999 * 119.99999 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.08652 * 359.97438 * 10 9 7 32 32 H 1.07997 * 119.91900 * 179.97438 * 11 10 9 33 33 H 0.97000 * 119.99786 * 215.30405 * 13 12 11 34 34 H 1.08007 * 128.08827 * 0.02562 * 17 16 14 35 35 H 1.08005 * 120.06444 * 0.03693 * 20 19 18 36 36 H 1.08004 * 119.93357 * 179.97438 * 21 20 19 37 37 H 1.07995 * 119.93058 * 179.70581 * 24 22 21 38 38 H 1.07998 * 120.06315 * 180.27319 * 25 24 22 39 39 H 1.07997 * 119.92072 * 179.70682 * 28 12 11 40 40 H 1.07997 * 120.08454 * 180.27639 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8838 2.3965 1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0858 -1.2130 -0.0729 9 6 1.3058 -2.4321 0.0936 10 6 1.8652 -3.5185 0.7948 11 6 1.1808 -4.6948 0.8811 12 6 -0.0700 -4.8241 0.2767 13 7 -0.7620 -6.0275 0.3687 14 6 -0.6805 -6.7675 1.4921 15 8 0.0577 -6.4237 2.3938 16 6 -1.4918 -8.0014 1.6276 17 6 -1.5191 -8.8843 2.7384 18 6 -2.4144 -9.8486 2.3671 19 6 -2.8269 -11.0266 3.1593 20 6 -3.7582 -11.9281 2.6412 21 6 -4.1396 -13.0251 3.3852 22 6 -3.6010 -13.2327 4.6440 23 17 -4.0865 -14.6154 5.5748 24 6 -2.6810 -12.3387 5.1656 25 6 -2.2873 -11.2414 4.4284 26 8 -2.8408 -9.5159 1.1361 27 7 -2.3274 -8.4937 0.7453 28 6 -0.6277 -3.7545 -0.4242 29 6 0.0421 -2.5702 -0.5137 30 1 -0.4850 0.8400 -0.0004 31 1 2.8339 -3.4203 1.2620 32 1 1.6085 -5.5287 1.4178 33 1 -1.3031 -6.3339 -0.3758 34 1 -0.9633 -8.8111 3.6615 35 1 -4.1790 -11.7670 1.6597 36 1 -4.8604 -13.7232 2.9856 37 1 -2.2680 -12.5032 6.1498 38 1 -1.5664 -10.5472 4.8344 39 1 -1.5943 -3.8634 -0.8935 40 1 -0.3928 -1.7416 -1.0529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225898842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:10 Heat of formation + Delta-G solvation = 55.926015 kcal Electronic energy + Delta-G solvation = -27504.368965 eV Core-core repulsion = 23277.442309 eV Total energy + Delta-G solvation = -4226.926656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.071 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.26503 -41.33856 -40.29721 -39.15254 -37.53134 -36.33832 -35.37016 -34.81298 -34.12352 -32.19272 -31.56052 -30.89965 -30.50584 -27.51661 -25.70165 -24.92686 -23.99561 -23.30838 -23.10425 -22.44887 -21.01755 -19.64408 -19.28980 -19.02546 -18.32958 -18.01274 -17.70228 -17.06530 -16.54063 -16.35550 -16.30409 -15.73883 -15.61650 -15.01738 -14.93788 -14.74222 -14.61046 -14.50939 -14.48254 -14.06714 -13.66269 -13.32730 -13.14869 -12.95790 -12.86205 -12.80876 -12.75733 -12.54613 -12.50346 -11.88954 -11.82018 -11.69670 -11.45218 -11.36777 -11.19267 -11.11304 -10.78461 -10.13387 -9.53605 -9.40816 -8.83441 -8.54349 -6.37469 -0.66630 -0.02736 0.24637 0.77000 0.92468 1.08850 1.09491 1.39913 1.46246 1.55171 1.63116 1.85656 2.01513 2.23165 2.59495 2.73227 2.76485 3.23392 3.62035 3.65749 3.82326 3.86072 3.97197 4.02279 4.17059 4.33102 4.39460 4.46380 4.56415 4.70704 4.85126 4.93822 5.01839 5.08276 5.09081 5.15654 5.25474 5.27783 5.34718 5.62284 5.64187 5.80595 5.90553 6.07093 6.31766 6.41210 6.62676 6.81110 6.90030 6.92550 7.07121 8.38701 Molecular weight = 368.07amu Principal moments of inertia in cm(-1) A = 0.034521 B = 0.001385 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.906248 B =20217.140184 C =20614.747056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.028 3.972 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.269 1.269 7 C -0.493 4.493 8 H 0.076 0.924 9 C 0.071 3.929 10 C -0.218 4.218 11 C -0.091 4.091 12 C 0.006 3.994 13 N -0.627 5.627 14 C 0.582 3.418 15 O -0.544 6.544 16 C -0.034 4.034 17 C -0.166 4.166 18 C 0.023 3.977 19 C -0.032 4.032 20 C -0.078 4.078 21 C -0.110 4.110 22 C -0.029 4.029 23 Cl -0.065 7.065 24 C -0.110 4.110 25 C -0.075 4.075 26 O 0.145 5.855 27 N -0.337 5.337 28 C -0.114 4.114 29 C -0.158 4.158 30 H 0.286 0.714 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.416 0.584 34 H 0.201 0.799 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 -26.384 7.332 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.194 1.194 7 C -0.523 4.523 8 H 0.094 0.906 9 C 0.069 3.931 10 C -0.238 4.238 11 C -0.111 4.111 12 C -0.087 4.087 13 N -0.271 5.271 14 C 0.368 3.632 15 O -0.421 6.421 16 C -0.191 4.191 17 C -0.188 4.188 18 C -0.040 4.040 19 C -0.033 4.033 20 C -0.097 4.097 21 C -0.128 4.128 22 C -0.056 4.056 23 Cl -0.036 7.036 24 C -0.128 4.128 25 C -0.094 4.094 26 O 0.064 5.936 27 N -0.034 5.034 28 C -0.134 4.134 29 C -0.178 4.178 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.253 0.747 34 H 0.218 0.782 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.176 0.824 38 H 0.173 0.827 39 H 0.139 0.861 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.683 -25.621 6.808 28.582 hybrid contribution 0.398 0.648 0.441 0.879 sum -10.284 -24.973 7.249 27.963 Atomic orbital electron populations 1.69823 1.08678 1.30092 1.38050 1.26777 0.95791 1.04427 0.91446 0.85032 0.79128 0.75956 0.78794 1.18227 1.18780 1.19403 1.19792 0.95020 0.91184 1.46342 0.90573 1.18084 0.93183 0.92806 0.89026 1.20939 1.01772 0.95177 1.05907 1.20520 0.93262 0.97656 0.99654 1.17304 0.93982 0.86619 1.10750 1.42714 1.47879 1.19932 1.16567 1.17240 0.81697 0.82038 0.82234 1.90771 1.39680 1.70563 1.41046 1.23138 1.01319 0.99641 0.94990 1.22815 1.01816 0.92915 1.01296 1.22565 0.97566 0.97787 0.86114 1.17698 1.00237 0.91528 0.93829 1.21468 0.94946 0.92371 1.00910 1.21230 1.00643 0.98460 0.92455 1.21360 0.99117 0.91141 0.93955 1.98401 1.90700 1.41618 1.72921 1.21197 0.96876 0.93165 1.01569 1.21317 0.98814 0.97493 0.91741 1.84823 1.50986 1.29806 1.27984 1.74155 1.09529 0.97774 1.21921 1.20536 0.99220 0.92156 1.01458 1.21167 0.97571 0.96222 1.02850 0.90343 0.87962 0.87019 0.74680 0.78236 0.82486 0.82347 0.82402 0.82696 0.86102 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.08 10.60 21.82 0.23 -43.85 16 2 C 0.03 1.42 5.42 85.24 0.46 1.88 16 3 Si 0.99 38.76 29.56 68.60 2.03 40.79 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 6 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.49 -26.86 9.02 23.39 0.21 -26.65 16 8 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 9 C 0.07 3.93 5.55 -21.27 -0.12 3.81 16 10 C -0.22 -11.28 9.74 22.48 0.22 -11.06 16 11 C -0.09 -4.42 8.61 22.14 0.19 -4.23 16 12 C 0.01 0.29 6.30 38.60 0.24 0.54 16 13 N -0.63 -23.24 5.30 -305.33 -1.62 -24.86 16 14 C 0.58 21.31 7.68 86.92 0.67 21.97 16 15 O -0.54 -23.33 14.36 -3.72 -0.05 -23.39 16 16 C -0.03 -0.98 7.18 42.84 0.31 -0.67 16 17 C -0.17 -3.59 10.34 22.83 0.24 -3.35 16 18 C 0.02 0.40 7.15 24.46 0.17 0.57 16 19 C -0.03 -0.40 5.87 -20.09 -0.12 -0.52 16 20 C -0.08 -0.77 9.73 22.52 0.22 -0.55 16 21 C -0.11 -0.95 9.81 22.25 0.22 -0.73 16 22 C -0.03 -0.29 6.33 22.39 0.14 -0.15 16 23 Cl -0.07 -0.68 28.95 -2.72 -0.08 -0.76 16 24 C -0.11 -1.00 9.81 22.26 0.22 -0.78 16 25 C -0.08 -0.77 9.58 22.52 0.22 -0.55 16 26 O 0.14 2.95 11.01 67.63 0.74 3.70 16 27 N -0.34 -8.65 11.82 -49.00 -0.58 -9.22 16 28 C -0.11 -5.25 9.90 22.14 0.22 -5.03 16 29 C -0.16 -8.31 8.61 22.48 0.19 -8.11 16 30 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 31 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.11 5.28 6.22 -2.91 -0.02 5.27 16 33 H 0.42 12.98 8.57 -92.71 -0.79 12.19 16 34 H 0.20 3.51 7.46 -2.91 -0.02 3.49 16 35 H 0.16 1.06 7.96 -2.91 -0.02 1.04 16 36 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.16 1.14 7.15 -2.91 -0.02 1.12 16 39 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 Total: -1.00 -66.04 371.42 4.91 -61.13 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.34 Total: 30.06 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 3.90 Total: -33.60 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.97 Total: -77.93 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.69 Total: -19.69 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -66.04 4.91 -61.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225898842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.055 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds