Wall clock time and date at job start Tue Mar 31 2020 05:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00035 * 2 1 4 4 H 1.48501 * 109.46948 * 269.99676 * 3 2 1 5 5 H 1.48497 * 109.47252 * 29.99373 * 3 2 1 6 6 H 1.48497 * 109.47443 * 149.99740 * 3 2 1 7 7 C 1.37882 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00095 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47371 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00387 * 93.61841 * 10 9 7 12 12 O 1.21279 * 120.00381 * 183.15138 * 11 10 9 13 13 C 1.50700 * 119.99723 * 3.15548 * 11 10 9 14 14 H 1.09008 * 110.01479 * 312.20669 * 13 11 10 15 15 C 1.53876 * 110.03326 * 190.81881 * 13 11 10 16 16 C 1.54259 * 106.64136 * 240.68652 * 15 13 11 17 17 C 1.54967 * 104.15896 * 336.44674 * 16 15 13 18 18 F 1.39897 * 110.71918 * 279.56826 * 17 16 15 19 19 F 1.39901 * 110.92496 * 156.29608 * 17 16 15 20 20 C 1.54263 * 110.03547 * 73.64957 * 13 11 10 21 21 C 1.46508 * 119.99876 * 273.62445 * 10 9 7 22 22 C 1.53001 * 109.47226 * 119.99738 * 21 10 9 23 23 C 1.53001 * 109.47095 * 179.97438 * 22 21 10 24 24 C 1.52997 * 109.46997 * 299.99780 * 23 22 21 25 25 C 1.53001 * 109.47018 * 60.00173 * 24 23 22 26 26 C 1.53000 * 109.47023 * 59.99761 * 25 24 23 27 27 C 1.52997 * 109.47419 * 299.99993 * 26 25 24 28 28 C 1.52993 * 109.47083 * 59.99858 * 23 22 21 29 29 C 1.53000 * 109.47185 * 359.97438 * 21 10 9 30 30 C 1.52997 * 109.46862 * 239.99515 * 21 10 9 31 31 H 0.97001 * 120.00184 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46997 * 60.00111 * 9 7 2 33 33 H 1.09004 * 109.47295 * 300.00308 * 9 7 2 34 34 H 1.08996 * 110.03205 * 359.97438 * 15 13 11 35 35 H 1.09001 * 110.03298 * 121.37760 * 15 13 11 36 36 H 1.08996 * 110.48481 * 95.09130 * 16 15 13 37 37 H 1.08994 * 110.49052 * 217.73472 * 16 15 13 38 38 H 1.09002 * 110.48732 * 261.57689 * 20 13 11 39 39 H 1.09001 * 110.48647 * 24.08469 * 20 13 11 40 40 H 1.09000 * 109.47246 * 300.00325 * 22 21 10 41 41 H 1.09001 * 109.46928 * 59.99489 * 22 21 10 42 42 H 1.08997 * 109.46783 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47349 * 300.00020 * 24 23 22 44 44 H 1.09003 * 109.46933 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.47339 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.46868 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.46913 * 60.00648 * 26 25 24 48 48 H 1.08997 * 109.47138 * 180.02562 * 27 26 25 49 49 H 1.09003 * 109.46898 * 179.97438 * 28 23 22 50 50 H 1.09006 * 109.46928 * 60.00272 * 28 23 22 51 51 H 1.09001 * 109.46868 * 299.99880 * 29 21 10 52 52 H 1.08994 * 109.47202 * 59.99878 * 29 21 10 53 53 H 1.08999 * 109.47769 * 300.00051 * 30 21 10 54 54 H 1.09001 * 109.47279 * 60.00066 * 30 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.5840 -4.1723 1.1671 12 8 3.4150 -5.0557 1.1726 13 6 1.9775 -3.7004 2.4634 14 1 1.9929 -2.6113 2.5079 15 6 2.7556 -4.2875 3.6541 16 6 1.7529 -5.1381 4.4608 17 6 0.3696 -4.5446 4.0921 18 9 0.1166 -3.3834 4.8302 19 9 -0.6464 -5.4860 4.2889 20 6 0.5284 -4.2149 2.5871 21 6 2.7409 -4.1179 -1.2639 22 6 4.2641 -3.9730 -1.2647 23 6 4.8259 -4.5012 -2.5862 24 6 4.4539 -5.9767 -2.7450 25 6 2.9308 -6.1217 -2.7441 26 6 2.3415 -5.3192 -3.9059 27 6 2.7134 -3.8437 -3.7471 28 6 4.2365 -3.6988 -3.7479 29 6 2.1512 -3.3153 -2.4253 30 6 2.3690 -5.5934 -1.4232 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8897 33 1 0.6240 -2.5567 0.8903 34 1 3.5716 -4.9142 3.2943 35 1 3.1486 -3.4835 4.2763 36 1 1.8114 -6.1841 4.1600 37 1 1.9398 -5.0365 5.5297 38 1 -0.1782 -3.4401 2.2897 39 1 0.3885 -5.1103 1.9814 40 1 4.5291 -2.9218 -1.1511 41 1 4.6839 -4.5450 -0.4373 42 1 5.9110 -4.3983 -2.5866 43 1 4.8738 -6.5484 -1.9173 44 1 4.8545 -6.3532 -3.6862 45 1 2.6657 -7.1729 -2.8577 46 1 1.2564 -5.4229 -3.9055 47 1 2.7417 -5.6956 -4.8473 48 1 2.2932 -3.2720 -4.5745 49 1 4.6372 -4.0749 -4.6893 50 1 4.5016 -2.6475 -3.6348 51 1 1.0661 -3.4190 -2.4245 52 1 2.4158 -2.2641 -2.3119 53 1 2.7888 -6.1655 -0.5959 54 1 1.2839 -5.6967 -1.4226 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000239782570.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:44 Heat of formation + Delta-G solvation = -176.789161 kcal Electronic energy + Delta-G solvation = -37345.647898 eV Core-core repulsion = 32722.449549 eV Total energy + Delta-G solvation = -4623.198349 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 367.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.90207 -48.06737 -42.68184 -40.64740 -37.56518 -36.81258 -34.61358 -33.48255 -33.47023 -32.33990 -30.11498 -29.24067 -28.89017 -26.81964 -26.74777 -24.81871 -23.77475 -22.42114 -22.30235 -22.12049 -21.39884 -19.66343 -18.71570 -18.64656 -18.41134 -17.87151 -17.57400 -17.02415 -16.82637 -16.34620 -16.06269 -15.42118 -15.39025 -15.34369 -15.21707 -15.08950 -14.98573 -14.42164 -14.35358 -14.26822 -14.21210 -14.05122 -13.93822 -13.83895 -13.43295 -13.29592 -13.25851 -13.23123 -13.07840 -12.87930 -12.60241 -12.42457 -12.37635 -12.20728 -12.05941 -11.80379 -11.73934 -11.72718 -11.65358 -11.58938 -11.55008 -11.48365 -11.14637 -10.64264 -10.63028 -10.52666 -10.11174 -9.30003 -8.18785 -6.30881 1.36792 1.40123 1.47916 1.72838 2.23992 2.41564 2.68407 2.83523 3.10965 3.18098 3.36716 3.59028 3.66061 3.79998 3.89904 4.02594 4.14680 4.17861 4.23190 4.24857 4.32308 4.35065 4.36261 4.37358 4.37784 4.44535 4.47864 4.52341 4.61325 4.67660 4.80029 4.84151 4.86493 4.90452 4.91633 4.94132 5.08860 5.12317 5.15709 5.18141 5.19689 5.20964 5.23429 5.24789 5.28179 5.38042 5.38460 5.48362 5.58609 5.63838 5.70042 5.71996 6.00847 6.09648 6.63979 6.87455 7.33841 7.45279 8.85873 Molecular weight = 367.21amu Principal moments of inertia in cm(-1) A = 0.007798 B = 0.004871 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3589.608179 B = 5747.121417 C = 8121.442174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.047 0.953 9 C 0.244 3.756 10 N -0.590 5.590 11 C 0.521 3.479 12 O -0.571 6.571 13 C -0.109 4.109 14 H 0.093 0.907 15 C -0.109 4.109 16 C -0.139 4.139 17 C 0.275 3.725 18 F -0.201 7.201 19 F -0.201 7.201 20 C -0.139 4.139 21 C 0.188 3.812 22 C -0.115 4.115 23 C -0.080 4.080 24 C -0.100 4.100 25 C -0.078 4.078 26 C -0.102 4.102 27 C -0.082 4.082 28 C -0.104 4.104 29 C -0.105 4.105 30 C -0.115 4.115 31 H 0.266 0.734 32 H 0.024 0.976 33 H 0.034 0.966 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.048 0.952 51 H 0.048 0.952 52 H 0.054 0.946 53 H 0.063 0.937 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 -11.916 -2.545 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.065 0.935 9 C 0.123 3.877 10 N -0.318 5.318 11 C 0.310 3.690 12 O -0.453 6.453 13 C -0.130 4.130 14 H 0.111 0.889 15 C -0.147 4.147 16 C -0.177 4.177 17 C 0.239 3.761 18 F -0.182 7.182 19 F -0.182 7.182 20 C -0.177 4.177 21 C 0.104 3.896 22 C -0.153 4.153 23 C -0.099 4.099 24 C -0.137 4.137 25 C -0.097 4.097 26 C -0.140 4.140 27 C -0.101 4.101 28 C -0.141 4.141 29 C -0.143 4.143 30 C -0.153 4.153 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.095 0.905 49 H 0.105 0.895 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.073 0.927 53 H 0.082 0.918 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.636 -12.215 -2.538 13.690 hybrid contribution -0.358 1.851 0.404 1.928 sum 5.278 -10.365 -2.134 11.825 Atomic orbital electron populations 1.69989 1.06964 1.27868 1.50793 1.25518 0.95436 1.01762 0.94790 0.85756 0.78783 0.80115 0.78278 1.20137 1.20802 1.19794 1.21544 0.92852 0.91515 1.51019 0.93510 1.19230 0.87856 0.82877 0.97694 1.48380 1.44384 1.33596 1.05489 1.20372 0.81579 0.81442 0.85620 1.90493 1.34587 1.32998 1.87238 1.21758 0.94715 1.02531 0.94021 0.88878 1.22091 0.98479 1.00096 0.94017 1.23273 0.89180 1.01775 1.03468 1.22174 0.87033 0.75403 0.91481 1.92990 1.95276 1.50705 1.79192 1.92968 1.63785 1.65303 1.96133 1.23142 0.96998 1.03808 0.93782 1.20207 0.93208 0.93411 0.82759 1.21826 0.94900 0.99574 0.99004 1.21050 0.99546 0.95901 0.93397 1.21497 0.94982 0.94929 1.02286 1.21038 0.95669 0.99670 0.93331 1.21550 1.00317 0.93614 0.98492 1.21100 0.96092 0.97107 0.95829 1.21539 0.94553 0.99415 0.98630 1.21716 0.98967 0.99322 0.94252 1.21831 0.99568 0.94832 0.99084 0.92522 0.95796 0.94814 0.88619 0.89706 0.87143 0.86906 0.89532 0.88238 0.94798 0.91704 0.90538 0.92642 0.89572 0.89682 0.92295 0.89499 0.90459 0.89472 0.93288 0.93302 0.92718 0.91799 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.08 13.29 21.45 0.28 -49.80 16 2 C 0.03 1.32 5.46 84.66 0.46 1.78 16 3 Si 0.94 42.06 29.54 68.60 2.03 44.09 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.53 -27.09 8.25 25.60 0.21 -26.88 16 8 H 0.05 2.48 7.81 -2.91 -0.02 2.45 16 9 C 0.24 11.36 4.20 85.63 0.36 11.72 16 10 N -0.59 -23.98 2.41 -779.09 -1.87 -25.85 16 11 C 0.52 20.29 6.21 87.66 0.54 20.83 16 12 O -0.57 -22.73 11.50 -3.03 -0.03 -22.76 16 13 C -0.11 -3.81 2.37 -10.82 -0.03 -3.84 16 14 H 0.09 3.73 7.44 -2.38 -0.02 3.71 16 15 C -0.11 -3.07 6.38 31.32 0.20 -2.87 16 16 C -0.14 -3.31 6.44 31.69 0.20 -3.11 16 17 C 0.28 8.10 2.50 31.91 0.08 8.18 16 18 F -0.20 -6.57 17.21 44.97 0.77 -5.80 16 19 F -0.20 -6.00 17.22 44.97 0.77 -5.23 16 20 C -0.14 -4.55 5.22 31.67 0.17 -4.38 16 21 C 0.19 6.75 0.78 3.60 0.00 6.75 16 22 C -0.11 -4.02 4.40 30.59 0.13 -3.88 16 23 C -0.08 -2.12 3.19 -10.80 -0.03 -2.15 16 24 C -0.10 -2.26 5.19 30.59 0.16 -2.11 16 25 C -0.08 -1.89 3.19 -10.81 -0.03 -1.92 16 26 C -0.10 -2.29 5.19 30.59 0.16 -2.13 16 27 C -0.08 -2.21 3.20 -10.78 -0.03 -2.24 16 28 C -0.10 -2.57 5.19 30.59 0.16 -2.41 16 29 C -0.10 -3.74 3.29 30.61 0.10 -3.64 16 30 C -0.11 -3.64 4.40 30.58 0.13 -3.50 16 31 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.02 1.20 5.92 -2.39 -0.01 1.18 16 33 H 0.03 1.63 4.58 -2.39 -0.01 1.61 16 34 H 0.10 2.83 6.46 -2.39 -0.02 2.81 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 3.14 6.79 -2.39 -0.02 3.12 16 39 H 0.10 3.13 7.85 -2.39 -0.02 3.11 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 2.48 6.06 -2.39 -0.01 2.46 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.34 8.14 -2.38 -0.02 1.33 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 51 H 0.05 1.86 6.87 -2.39 -0.02 1.84 16 52 H 0.05 2.31 6.87 -2.39 -0.02 2.29 16 53 H 0.06 2.23 6.28 -2.39 -0.01 2.21 16 54 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -57.78 392.76 5.80 -51.98 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.90 Total: 29.18 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 2.95 Total: -15.81 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -1.59 Total: -75.65 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.03 Total: -22.76 kcal Atomic # 9 Polarization: -12.57 SS G_CDS: 1.55 Total: -11.02 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -57.78 5.80 -51.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000239782570.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.808 kcal (2) G-P(sol) polarization free energy of solvation -57.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds