Wall clock time and date at job start Tue Mar 31 2020 07:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34708 * 116.99939 * 2 1 4 4 O 1.21469 * 120.00161 * 359.97438 * 3 2 1 5 5 C 1.47747 * 119.99795 * 180.02562 * 3 2 1 6 6 C 1.39738 * 120.07486 * 359.97438 * 5 3 2 7 7 C 1.38135 * 120.13407 * 179.97438 * 6 5 3 8 8 Br 1.89097 * 119.86465 * 180.02562 * 7 6 5 9 9 C 1.38199 * 120.27651 * 0.02562 * 7 6 5 10 10 C 1.39665 * 120.14464 * 359.97438 * 9 7 6 11 11 C 1.47858 * 120.06226 * 180.02562 * 10 9 7 12 12 O 1.21554 * 119.99885 * 221.53945 * 11 10 9 13 13 N 1.34776 * 120.00458 * 41.54974 * 11 10 9 14 14 C 1.46501 * 119.99801 * 355.46684 * 13 11 10 15 15 C 1.46496 * 120.00266 * 175.46793 * 13 11 10 16 16 H 1.09000 * 109.47103 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.47259 * 119.99596 * 15 13 11 18 18 C 1.50700 * 109.47208 * 239.99612 * 15 13 11 19 19 H 1.08006 * 119.99806 * 0.02562 * 18 15 13 20 20 C 1.37879 * 120.00139 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99884 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99994 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.46963 * 269.99940 * 22 20 18 24 24 H 1.48506 * 109.47109 * 29.99823 * 22 20 18 25 25 H 1.48498 * 109.47328 * 149.99773 * 22 20 18 26 26 C 1.39319 * 119.86518 * 0.29110 * 10 9 7 27 27 H 1.09001 * 109.47086 * 60.00448 * 1 2 3 28 28 H 1.08995 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47430 * 300.00739 * 1 2 3 30 30 H 1.08003 * 119.93425 * 0.02562 * 6 5 3 31 31 H 1.07997 * 119.93055 * 179.97438 * 9 7 6 32 32 H 1.09009 * 109.47100 * 275.16789 * 14 13 11 33 33 H 1.08994 * 109.47408 * 35.16370 * 14 13 11 34 34 H 1.08997 * 109.47412 * 155.17413 * 14 13 11 35 35 H 1.09004 * 109.47267 * 179.97438 * 17 15 13 36 36 H 1.08995 * 109.47126 * 300.00045 * 17 15 13 37 37 H 1.09000 * 109.47033 * 59.99994 * 17 15 13 38 38 H 0.96994 * 119.99436 * 180.02562 * 21 20 18 39 39 H 1.08003 * 120.13064 * 179.73088 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3016 0.1066 -0.0006 7 6 5.6811 0.1774 -0.0016 8 35 6.7056 -1.4120 -0.0024 9 6 6.3157 1.4051 -0.0022 10 6 5.5649 2.5828 -0.0022 11 6 6.2458 3.8952 -0.0033 12 8 5.8268 4.7979 0.6946 13 7 7.3309 4.0909 -0.7784 14 6 7.8952 2.9762 -1.5434 15 6 7.9462 5.4181 -0.8558 16 1 7.3923 6.1128 -0.2243 17 6 9.3965 5.3368 -0.3753 18 6 7.9161 5.9034 -2.2822 19 1 7.4817 5.2850 -3.0539 20 6 8.4431 7.1366 -2.6022 21 7 8.9717 7.8897 -1.6624 22 14 8.4051 7.7384 -4.3702 23 1 9.6429 7.3053 -5.0671 24 1 7.2218 7.1672 -5.0622 25 1 8.3205 9.2208 -4.3869 26 6 4.1733 2.5183 0.0045 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8114 -0.8558 -0.0006 31 1 7.3946 1.4539 -0.0026 32 1 8.5764 2.4084 -0.9095 33 1 7.0902 2.3259 -1.8855 34 1 8.4391 3.3648 -2.4044 35 1 9.8545 6.3243 -0.4333 36 1 9.4183 4.9859 0.6564 37 1 9.9502 4.6423 -1.0071 38 1 9.3420 8.7574 -1.8875 39 1 3.5885 3.4263 0.0089 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253427566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:22 Heat of formation + Delta-G solvation = -79.480812 kcal Electronic energy + Delta-G solvation = -24837.676258 eV Core-core repulsion = 20985.422653 eV Total energy + Delta-G solvation = -3852.253605 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 369.041 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91788 -39.91880 -38.18991 -36.68312 -35.52326 -33.21263 -32.72902 -31.86880 -29.57619 -29.32169 -28.02738 -26.47298 -25.28292 -24.48096 -23.88702 -21.24519 -21.01066 -19.16482 -17.81324 -17.39162 -16.81926 -16.63233 -16.34923 -16.16792 -15.53944 -15.37082 -14.58754 -14.26485 -14.09723 -13.89077 -13.78786 -13.24356 -13.10875 -12.76609 -12.59303 -12.45965 -12.19573 -11.72424 -11.67953 -11.39597 -11.14509 -11.11890 -11.08634 -10.89618 -10.86900 -10.75937 -10.58201 -10.32740 -10.22503 -9.43376 -9.26783 -9.17344 -9.04307 -8.48507 -7.75018 -6.12684 -4.21303 0.27604 0.67023 1.24887 2.10773 2.32341 3.04292 3.23870 3.31414 3.33664 3.51215 3.77525 4.26601 4.34614 4.50736 4.75575 4.77508 4.81491 4.88542 4.90271 5.09678 5.18110 5.20071 5.30875 5.58873 5.64952 5.82115 5.84482 5.91677 6.08550 6.22857 6.27468 6.69264 6.76247 6.98159 7.28514 7.42876 7.44102 7.64650 7.93760 8.10758 8.36262 8.69799 8.87805 9.45363 10.92708 Molecular weight = 369.04amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.003161 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.435391 B = 8854.984497 C =10716.079414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.495 6.495 5 C -0.129 4.129 6 C -0.023 4.023 7 C -0.113 4.113 8 Br -0.037 7.037 9 C -0.031 4.031 10 C -0.115 4.115 11 C 0.546 3.454 12 O -0.536 6.536 13 N -0.580 5.580 14 C 0.075 3.925 15 C 0.258 3.742 16 H 0.066 0.934 17 C -0.147 4.147 18 C -0.530 4.530 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.274 1.274 25 H -0.285 1.285 26 C 0.009 3.991 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.012 0.988 37 H 0.031 0.969 38 H 0.264 0.736 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 -22.724 2.847 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.357 3.643 4 O -0.383 6.383 5 C -0.131 4.131 6 C -0.043 4.043 7 C -0.192 4.192 8 Br 0.048 6.952 9 C -0.051 4.051 10 C -0.119 4.119 11 C 0.331 3.669 12 O -0.415 6.415 13 N -0.310 5.310 14 C -0.069 4.069 15 C 0.158 3.842 16 H 0.083 0.917 17 C -0.205 4.205 18 C -0.568 4.568 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.199 1.199 25 H -0.210 1.210 26 C -0.010 4.010 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.142 -22.331 3.221 23.986 hybrid contribution -0.353 0.646 -1.045 1.279 sum -8.495 -21.684 2.176 23.391 Atomic orbital electron populations 1.23314 0.75612 1.03861 1.02895 1.86522 1.23836 1.32392 1.84435 1.20958 0.88657 0.81660 0.73015 1.90887 1.66444 1.35895 1.45047 1.18891 0.89391 0.94085 1.10698 1.21478 0.91653 0.98862 0.92299 1.21595 0.94259 0.92596 1.10779 1.96758 1.70640 1.29929 1.97831 1.21945 1.01764 0.89752 0.91615 1.20205 0.93605 0.94568 1.03554 1.17991 0.81318 0.86200 0.81365 1.90784 1.65504 1.43393 1.41817 1.48224 1.27404 1.12853 1.42543 1.21924 0.98195 0.89512 0.97240 1.19044 0.90366 0.77143 0.97609 0.91655 1.22095 0.98900 1.03518 0.96013 1.21300 1.39765 1.02775 0.92994 0.92110 1.24886 0.94850 0.96283 0.97641 1.69875 1.38975 1.11257 1.32272 0.86477 0.78410 0.78055 0.84368 1.20557 1.19877 1.21048 1.21471 0.93300 0.97515 0.88705 0.91624 0.87837 0.91643 0.83205 0.82895 0.93442 0.92513 0.89362 0.88654 0.96842 0.95029 0.92573 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.60 9.81 -40.51 -0.40 -4.00 16 3 C 0.51 6.53 7.90 34.62 0.27 6.81 16 4 O -0.49 -7.66 16.13 -19.24 -0.31 -7.97 16 5 C -0.13 -1.62 5.87 -105.04 -0.62 -2.23 16 6 C -0.02 -0.24 9.34 -39.06 -0.36 -0.61 16 7 C -0.11 -1.24 6.21 -39.63 -0.25 -1.48 16 8 Br -0.04 -0.35 33.69 -68.01 -2.29 -2.64 16 9 C -0.03 -0.39 7.35 -39.06 -0.29 -0.68 16 10 C -0.12 -1.81 5.15 -105.03 -0.54 -2.35 16 11 C 0.55 11.13 7.32 -12.32 -0.09 11.04 16 12 O -0.54 -13.07 16.28 5.32 0.09 -12.98 16 13 N -0.58 -11.94 2.75 -176.37 -0.49 -12.43 16 14 C 0.07 1.19 7.87 59.85 0.47 1.66 16 15 C 0.26 6.39 2.63 -69.08 -0.18 6.21 16 16 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 17 C -0.15 -3.40 8.97 37.16 0.33 -3.06 16 18 C -0.53 -13.93 7.96 -34.44 -0.27 -14.20 16 19 H 0.06 1.57 7.42 -52.48 -0.39 1.18 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 22 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 C 0.01 0.14 9.19 -38.77 -0.36 -0.22 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.15 1.26 7.60 -52.48 -0.40 0.86 16 31 H 0.15 1.80 5.52 -52.49 -0.29 1.51 16 32 H 0.05 0.64 6.85 -51.92 -0.36 0.28 16 33 H 0.06 0.78 5.99 -51.93 -0.31 0.47 16 34 H 0.09 1.49 7.10 -51.93 -0.37 1.13 16 35 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 39 H 0.15 2.49 7.64 -52.48 -0.40 2.09 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -31.23 352.09 -7.80 -39.03 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.41 Total: 0.07 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.91 Total: 3.90 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.14 Total: -36.39 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.62 Total: -24.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.29 Total: -2.64 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.23 -7.80 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253427566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.447 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds