Wall clock time and date at job start Tue Mar 31 2020 07:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34708 * 116.99939 * 2 1 4 4 O 1.21469 * 120.00161 * 359.97438 * 3 2 1 5 5 C 1.47747 * 119.99795 * 180.02562 * 3 2 1 6 6 C 1.39738 * 120.07486 * 359.97438 * 5 3 2 7 7 C 1.38135 * 120.13407 * 179.97438 * 6 5 3 8 8 Br 1.89097 * 119.86465 * 180.02562 * 7 6 5 9 9 C 1.38199 * 120.27651 * 0.02562 * 7 6 5 10 10 C 1.39665 * 120.14464 * 359.97438 * 9 7 6 11 11 C 1.47858 * 120.06226 * 180.02562 * 10 9 7 12 12 O 1.21554 * 119.99885 * 221.53945 * 11 10 9 13 13 N 1.34776 * 120.00458 * 41.54974 * 11 10 9 14 14 C 1.46501 * 119.99801 * 355.46684 * 13 11 10 15 15 C 1.46496 * 120.00266 * 175.46793 * 13 11 10 16 16 H 1.09000 * 109.47103 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.47259 * 119.99596 * 15 13 11 18 18 C 1.50700 * 109.47208 * 239.99612 * 15 13 11 19 19 H 1.08006 * 119.99806 * 0.02562 * 18 15 13 20 20 C 1.37879 * 120.00139 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99884 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99994 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.46963 * 269.99940 * 22 20 18 24 24 H 1.48506 * 109.47109 * 29.99823 * 22 20 18 25 25 H 1.48498 * 109.47328 * 149.99773 * 22 20 18 26 26 C 1.39319 * 119.86518 * 0.29110 * 10 9 7 27 27 H 1.09001 * 109.47086 * 60.00448 * 1 2 3 28 28 H 1.08995 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47430 * 300.00739 * 1 2 3 30 30 H 1.08003 * 119.93425 * 0.02562 * 6 5 3 31 31 H 1.07997 * 119.93055 * 179.97438 * 9 7 6 32 32 H 1.09009 * 109.47100 * 275.16789 * 14 13 11 33 33 H 1.08994 * 109.47408 * 35.16370 * 14 13 11 34 34 H 1.08997 * 109.47412 * 155.17413 * 14 13 11 35 35 H 1.09004 * 109.47267 * 179.97438 * 17 15 13 36 36 H 1.08995 * 109.47126 * 300.00045 * 17 15 13 37 37 H 1.09000 * 109.47033 * 59.99994 * 17 15 13 38 38 H 0.96994 * 119.99436 * 180.02562 * 21 20 18 39 39 H 1.08003 * 120.13064 * 179.73088 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3016 0.1066 -0.0006 7 6 5.6811 0.1774 -0.0016 8 35 6.7056 -1.4120 -0.0024 9 6 6.3157 1.4051 -0.0022 10 6 5.5649 2.5828 -0.0022 11 6 6.2458 3.8952 -0.0033 12 8 5.8268 4.7979 0.6946 13 7 7.3309 4.0909 -0.7784 14 6 7.8952 2.9762 -1.5434 15 6 7.9462 5.4181 -0.8558 16 1 7.3923 6.1128 -0.2243 17 6 9.3965 5.3368 -0.3753 18 6 7.9161 5.9034 -2.2822 19 1 7.4817 5.2850 -3.0539 20 6 8.4431 7.1366 -2.6022 21 7 8.9717 7.8897 -1.6624 22 14 8.4051 7.7384 -4.3702 23 1 9.6429 7.3053 -5.0671 24 1 7.2218 7.1672 -5.0622 25 1 8.3205 9.2208 -4.3869 26 6 4.1733 2.5183 0.0045 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8114 -0.8558 -0.0006 31 1 7.3946 1.4539 -0.0026 32 1 8.5764 2.4084 -0.9095 33 1 7.0902 2.3259 -1.8855 34 1 8.4391 3.3648 -2.4044 35 1 9.8545 6.3243 -0.4333 36 1 9.4183 4.9859 0.6564 37 1 9.9502 4.6423 -1.0071 38 1 9.3420 8.7574 -1.8875 39 1 3.5885 3.4263 0.0089 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253427566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:21 Heat of formation + Delta-G solvation = -97.526171 kcal Electronic energy + Delta-G solvation = -24838.458763 eV Core-core repulsion = 20985.422653 eV Total energy + Delta-G solvation = -3853.036110 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 369.041 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.97190 -41.19817 -39.47583 -37.62691 -37.27765 -34.99757 -33.70749 -33.22283 -31.06771 -30.50047 -28.75200 -27.87732 -27.31149 -25.54630 -25.14803 -22.67804 -22.14013 -20.60737 -19.05626 -18.50320 -18.38585 -17.87270 -17.50776 -17.32914 -17.11909 -16.67585 -16.26242 -15.65021 -15.22738 -14.86969 -14.81263 -14.66746 -14.37149 -14.16832 -14.02847 -13.63065 -13.37310 -13.15721 -13.01459 -12.85349 -12.76377 -12.68843 -12.54528 -12.21693 -12.14632 -12.03430 -11.88556 -11.87693 -11.41485 -11.22363 -10.92481 -10.53932 -10.36566 -10.03366 -9.44490 -8.16279 -6.32838 -0.74108 -0.40057 0.35862 1.06356 1.40796 1.42380 1.44268 1.53026 1.73207 2.13547 2.41041 2.44436 3.12364 3.23992 3.43541 3.69947 3.75151 3.83245 4.01644 4.20917 4.31428 4.34325 4.35929 4.57506 4.68863 4.71459 4.74864 4.81661 4.88001 4.90874 4.98249 5.04340 5.15297 5.19635 5.45499 5.53613 5.64120 5.99971 6.13406 6.50287 6.65254 6.73796 7.16025 7.39772 8.88378 Molecular weight = 369.04amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.003161 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.435391 B = 8854.984497 C =10716.079414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.517 3.483 4 O -0.531 6.531 5 C -0.128 4.128 6 C 0.003 3.997 7 C -0.108 4.108 8 Br -0.008 7.008 9 C -0.019 4.019 10 C -0.129 4.129 11 C 0.540 3.460 12 O -0.592 6.592 13 N -0.586 5.586 14 C 0.070 3.930 15 C 0.262 3.738 16 H 0.011 0.989 17 C -0.132 4.132 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.017 3.983 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.265 1.265 24 H -0.272 1.272 25 H -0.287 1.287 26 C -0.002 4.002 27 H 0.063 0.937 28 H 0.142 0.858 29 H 0.063 0.937 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.051 0.949 38 H 0.265 0.735 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.111 -26.670 1.679 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.363 3.637 4 O -0.422 6.422 5 C -0.131 4.131 6 C -0.017 4.017 7 C -0.188 4.188 8 Br 0.078 6.922 9 C -0.039 4.039 10 C -0.134 4.134 11 C 0.328 3.672 12 O -0.475 6.475 13 N -0.315 5.315 14 C -0.071 4.071 15 C 0.160 3.840 16 H 0.029 0.971 17 C -0.191 4.191 18 C -0.579 4.579 19 H 0.081 0.919 20 C -0.183 4.183 21 N -0.554 5.554 22 Si 0.789 3.211 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.213 1.213 26 C -0.022 4.022 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.199 0.801 31 H 0.183 0.817 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.037 -26.349 2.034 27.623 hybrid contribution -0.448 1.724 -0.637 1.892 sum -8.486 -24.625 1.397 26.084 Atomic orbital electron populations 1.23674 0.73726 1.06317 1.02757 1.86510 1.25577 1.30511 1.83640 1.20976 0.88633 0.81947 0.72167 1.90878 1.67165 1.37279 1.46862 1.18830 0.89697 0.93748 1.10780 1.21786 0.91429 0.99152 0.89325 1.21694 0.94648 0.92988 1.09443 1.96814 1.69996 1.27699 1.97686 1.21966 1.02113 0.89195 0.90606 1.19655 0.93642 0.93044 1.07015 1.18671 0.80839 0.87511 0.80204 1.90739 1.66835 1.45859 1.44046 1.48177 1.27628 1.12583 1.43097 1.22206 0.99435 0.88438 0.97061 1.18637 0.90703 0.78622 0.96012 0.97135 1.21878 0.97739 1.02536 0.96940 1.21561 1.39586 1.03183 0.93609 0.91935 1.25710 0.94520 0.96449 1.01579 1.70019 1.39688 1.11532 1.34206 0.85461 0.78825 0.77160 0.79613 1.19039 1.19673 1.21255 1.21274 0.93037 0.97890 0.89972 0.91846 0.84022 0.91848 0.80091 0.81664 0.90172 0.90066 0.90247 0.91270 0.95892 0.93005 0.92566 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.16 9.81 -56.18 -0.55 -6.71 16 3 C 0.52 12.70 7.90 70.34 0.56 13.25 16 4 O -0.53 -16.74 16.13 19.94 0.32 -16.42 16 5 C -0.13 -3.08 5.87 -20.13 -0.12 -3.19 16 6 C 0.00 0.05 9.34 22.61 0.21 0.26 16 7 C -0.11 -2.00 6.21 22.24 0.14 -1.86 16 8 Br -0.01 -0.11 33.69 -20.37 -0.69 -0.80 16 9 C -0.02 -0.43 7.35 22.61 0.17 -0.27 16 10 C -0.13 -4.08 5.15 -20.13 -0.10 -4.18 16 11 C 0.54 22.97 7.32 86.79 0.64 23.61 16 12 O -0.59 -31.11 16.28 -3.88 -0.06 -31.17 16 13 N -0.59 -24.57 2.75 -830.20 -2.29 -26.86 16 14 C 0.07 2.12 7.87 127.77 1.01 3.13 16 15 C 0.26 13.50 2.63 44.25 0.12 13.62 16 16 H 0.01 0.66 6.91 -2.39 -0.02 0.65 16 17 C -0.13 -6.24 8.97 71.98 0.65 -5.60 16 18 C -0.54 -29.07 7.96 25.60 0.20 -28.87 16 19 H 0.06 3.26 7.42 -2.91 -0.02 3.23 16 20 C 0.02 0.94 5.30 84.65 0.45 1.39 16 21 N -0.92 -52.41 11.32 21.45 0.24 -52.17 16 22 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 26 C 0.00 -0.06 9.19 22.80 0.21 0.15 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.18 2.14 7.60 -2.91 -0.02 2.12 16 31 H 0.17 3.37 5.52 -2.91 -0.02 3.35 16 32 H 0.08 1.90 6.85 -2.38 -0.02 1.88 16 33 H 0.08 2.05 5.99 -2.39 -0.01 2.03 16 34 H 0.08 2.56 7.10 -2.39 -0.02 2.55 16 35 H 0.07 3.65 6.07 -2.38 -0.01 3.63 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.13 4.53 7.64 -2.91 -0.02 4.51 16 Total: -1.00 -72.49 352.09 5.41 -67.08 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.09 Total: 9.30 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.31 Total: 12.97 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -2.04 Total: -79.03 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.29 Total: -54.30 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -0.69 Total: -0.80 kcal Total: -72.49 5.41 -67.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253427566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.442 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds