Wall clock time and date at job start Tue Mar 31 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99600 * 2 1 4 4 C 1.50697 * 109.47087 * 269.99472 * 3 2 1 5 5 H 1.07990 * 120.00212 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99924 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99847 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99970 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46959 * 89.99694 * 8 6 4 10 10 H 1.48494 * 109.46975 * 209.99705 * 8 6 4 11 11 H 1.48498 * 109.47167 * 329.99978 * 8 6 4 12 12 C 1.34773 * 119.99968 * 179.97438 * 2 1 3 13 13 O 1.21593 * 119.99894 * 180.02562 * 12 2 1 14 14 N 1.34777 * 120.00097 * 359.73201 * 12 2 1 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 2 16 16 H 1.08999 * 109.46902 * 324.99605 * 15 14 12 17 17 C 1.50700 * 109.46700 * 204.99839 * 15 14 12 18 18 C 1.38262 * 119.97054 * 140.00337 * 17 15 14 19 19 C 1.38196 * 120.05189 * 179.97438 * 18 17 15 20 20 C 1.38439 * 119.98662 * 359.97438 * 19 18 17 21 21 F 1.35100 * 120.03119 * 180.02562 * 20 19 18 22 22 C 1.38552 * 119.93685 * 359.97438 * 20 19 18 23 23 Cl 1.73600 * 120.02221 * 180.02562 * 22 20 19 24 24 C 1.38214 * 119.96832 * 319.72041 * 17 15 14 25 25 C 1.52995 * 109.47009 * 84.99752 * 15 14 12 26 26 F 1.39897 * 109.47639 * 59.99970 * 25 15 14 27 27 F 1.39904 * 109.46711 * 180.02562 * 25 15 14 28 28 F 1.39898 * 109.47309 * 299.99360 * 25 15 14 29 29 H 1.08994 * 109.47014 * 270.00064 * 1 2 3 30 30 H 1.09003 * 109.47017 * 30.00282 * 1 2 3 31 31 H 1.09002 * 109.46900 * 149.99874 * 1 2 3 32 32 H 1.08999 * 109.47653 * 30.00339 * 3 2 1 33 33 H 1.09006 * 109.46908 * 149.99749 * 3 2 1 34 34 H 0.97001 * 119.99696 * 179.97438 * 7 6 4 35 35 H 0.97000 * 119.99736 * 0.26819 * 14 12 2 36 36 H 1.08009 * 119.97357 * 359.97265 * 18 17 15 37 37 H 1.07996 * 120.00629 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.99626 * 0.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0976 1.0962 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4377 3.4171 -3.4339 9 1 2.3079 4.2605 -3.8998 10 1 4.6983 4.1995 -3.4967 11 1 3.5540 2.2201 -4.3051 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4651 -2.3344 0.0065 15 6 2.1976 -3.6031 0.0132 16 1 3.1083 -3.4998 -0.5768 17 6 1.3336 -4.6850 -0.5818 18 6 1.8921 -5.6318 -1.4205 19 6 1.1014 -6.6250 -1.9666 20 6 -0.2507 -6.6726 -1.6733 21 9 -1.0244 -7.6435 -2.2062 22 6 -0.8096 -5.7243 -0.8319 23 17 -2.5047 -5.7822 -0.4622 24 6 -0.0151 -4.7335 -0.2838 25 6 2.5614 -3.9743 1.4521 26 9 1.3926 -4.1068 2.2094 27 9 3.2615 -5.1856 1.4584 28 9 3.3635 -2.9699 2.0044 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1385 0.5139 34 1 4.0315 4.4433 -0.8504 35 1 0.4951 -2.3343 0.0065 36 1 2.9470 -5.5951 -1.6491 37 1 1.5383 -7.3639 -2.6219 38 1 -0.4494 -3.9958 0.3748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278415888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:45 Heat of formation + Delta-G solvation = -192.690985 kcal Electronic energy + Delta-G solvation = -31747.016532 eV Core-core repulsion = 26536.683069 eV Total energy + Delta-G solvation = -5210.333464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.066 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.03975 -49.42231 -47.60355 -47.42891 -40.33348 -39.24563 -37.06342 -35.56368 -34.74222 -32.70605 -31.56494 -31.32279 -28.49339 -27.53533 -25.82109 -24.16689 -23.83236 -22.87312 -21.66657 -19.89128 -18.72026 -18.44901 -18.21838 -17.96399 -17.46180 -17.08816 -16.55068 -16.28204 -16.19469 -15.59677 -14.92586 -14.70240 -14.62731 -14.38346 -14.32522 -14.22627 -13.96300 -13.93813 -13.66200 -13.60142 -13.53753 -13.30852 -13.20388 -12.94626 -12.64623 -12.27923 -12.20687 -11.94666 -11.89007 -11.77660 -11.38275 -11.22184 -10.93168 -10.60025 -10.18564 -9.71690 -9.58963 -9.46043 -9.24793 -9.16405 -8.45313 -7.72229 -6.06074 -4.10895 0.31492 0.49817 1.52890 2.53044 2.67353 3.09043 3.28734 3.35731 3.39692 3.47717 3.59987 3.64789 3.97082 4.07427 4.19263 4.34405 4.43602 4.49607 4.51463 4.62815 4.86008 5.09371 5.20650 5.28175 5.32677 5.44366 5.48858 5.71959 5.81182 6.06605 6.08383 6.29435 6.61173 7.27807 7.44894 7.57134 7.91066 8.20457 8.48165 8.89095 9.14068 9.54316 11.01877 Molecular weight = 368.07amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.002944 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.590521 B = 9508.193311 C =10360.942521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.610 5.610 3 C 0.260 3.740 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.700 3.300 13 O -0.567 6.567 14 N -0.746 5.746 15 C 0.176 3.824 16 H 0.144 0.856 17 C -0.107 4.107 18 C -0.052 4.052 19 C -0.139 4.139 20 C 0.122 3.878 21 F -0.123 7.123 22 C -0.073 4.073 23 Cl -0.042 7.042 24 C -0.060 4.060 25 C 0.437 3.563 26 F -0.184 7.184 27 F -0.182 7.182 28 F -0.160 7.160 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.399 0.601 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 -21.712 0.822 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.345 5.345 3 C 0.141 3.859 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.401 3.599 13 O -0.443 6.443 14 N -0.407 5.407 15 C 0.066 3.934 16 H 0.161 0.839 17 C -0.108 4.108 18 C -0.070 4.070 19 C -0.158 4.158 20 C 0.102 3.898 21 F -0.102 7.102 22 C -0.101 4.101 23 Cl -0.013 7.013 24 C -0.079 4.079 25 C 0.380 3.620 26 F -0.165 7.165 27 F -0.164 7.164 28 F -0.142 7.142 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.644 -21.467 0.916 23.160 hybrid contribution -0.648 0.155 -0.759 1.010 sum -9.292 -21.312 0.157 23.250 Atomic orbital electron populations 1.21606 0.81660 1.02405 1.00471 1.47450 1.05708 1.06179 1.75135 1.19271 0.92416 0.76711 0.97510 1.21442 1.36583 1.06299 0.92334 0.92463 1.24929 0.95345 0.96388 0.97408 1.69930 1.38306 1.14341 1.30717 0.86493 0.77680 0.78562 0.84645 1.20682 1.21084 1.19948 1.15881 0.85580 0.79997 0.78416 1.90941 1.11092 1.85487 1.56748 1.45336 1.09657 1.03108 1.82581 1.20436 0.98763 0.83672 0.90564 0.83869 1.19511 0.93494 0.97259 1.00535 1.21041 1.01049 0.91717 0.93233 1.21145 0.90984 1.01048 1.02581 1.17489 0.89296 0.87401 0.95635 1.91564 1.74579 1.60009 1.84022 1.20872 0.87629 0.99058 1.02520 1.98409 1.11403 1.98071 1.93435 1.20804 0.92391 0.96761 0.97931 1.21180 0.75042 0.74841 0.90891 1.93153 1.48694 1.95712 1.78982 1.93170 1.79759 1.46445 1.97000 1.93307 1.73691 1.60054 1.87103 0.93559 0.90168 0.93262 0.94732 0.93554 0.92677 0.76272 0.83171 0.82949 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.20 59.85 0.61 1.84 16 2 N -0.61 -12.41 2.86 -188.74 -0.54 -12.95 16 3 C 0.26 6.62 5.16 -5.20 -0.03 6.59 16 4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.70 13.87 7.81 -86.92 -0.68 13.19 16 13 O -0.57 -13.58 14.49 5.28 0.08 -13.51 16 14 N -0.75 -10.57 4.81 -59.81 -0.29 -10.85 16 15 C 0.18 2.15 2.29 -69.08 -0.16 1.99 16 16 H 0.14 1.81 7.44 -51.93 -0.39 1.43 16 17 C -0.11 -1.01 4.64 -104.62 -0.49 -1.50 16 18 C -0.05 -0.40 9.67 -39.59 -0.38 -0.78 16 19 C -0.14 -0.99 10.03 -39.52 -0.40 -1.39 16 20 C 0.12 1.08 7.28 -39.39 -0.29 0.80 16 21 F -0.12 -1.18 16.84 2.25 0.04 -1.14 16 22 C -0.07 -0.68 6.33 -39.44 -0.25 -0.93 16 23 Cl -0.04 -0.39 28.62 -51.86 -1.48 -1.87 16 24 C -0.06 -0.55 8.07 -39.56 -0.32 -0.87 16 25 C 0.44 5.82 2.82 37.16 0.10 5.92 16 26 F -0.18 -2.33 16.16 2.25 0.04 -2.30 16 27 F -0.18 -2.22 17.03 2.25 0.04 -2.18 16 28 F -0.16 -2.72 15.67 2.25 0.04 -2.69 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.05 0.57 6.37 -51.93 -0.33 0.24 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.40 4.59 4.62 -40.82 -0.19 4.40 16 36 H 0.15 0.84 8.04 -52.48 -0.42 0.42 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.15 1.21 6.78 -52.49 -0.36 0.85 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -33.00 358.86 -6.95 -39.95 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.30 Total: -0.50 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: -2.69 Total: 11.58 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.09 Total: -49.22 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.15 Total: -8.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.00 -6.95 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278415888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.738 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds