Wall clock time and date at job start Tue Mar 31 2020 07:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.29957 * 118.56296 * 2 1 4 4 Br 1.89107 * 118.36619 * 0.39587 * 3 2 1 5 5 C 1.50137 * 123.26526 * 180.37042 * 3 2 1 6 6 N 1.46840 * 110.27922 * 342.94863 * 5 3 2 7 7 C 1.46889 * 111.00708 * 174.33573 * 6 5 3 8 8 C 1.50706 * 109.47109 * 66.04747 * 7 6 5 9 9 O 1.21281 * 119.99699 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00080 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46877 * 269.72057 * 11 10 8 13 13 H 1.08005 * 119.99817 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00081 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99848 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00321 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46938 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47198 * 120.00527 * 16 14 12 19 19 H 1.48498 * 109.47360 * 240.00281 * 16 14 12 20 20 C 1.46499 * 120.00036 * 359.72107 * 10 8 7 21 21 C 1.53001 * 109.47147 * 270.27655 * 20 10 8 22 22 C 1.47198 * 109.47000 * 179.97438 * 21 20 10 23 23 N 9.28246 * 166.83728 * 193.80463 * 2 1 3 24 24 C 1.47242 * 110.20548 * 50.94392 * 6 5 3 25 25 C 1.50308 * 118.56054 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47068 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46975 * 119.99970 * 1 2 3 28 28 H 1.09002 * 109.47070 * 240.00229 * 1 2 3 29 29 H 1.09007 * 109.33949 * 222.69850 * 5 3 2 30 30 H 1.09005 * 109.20563 * 103.11323 * 5 3 2 31 31 H 1.09004 * 109.47256 * 306.05114 * 7 6 5 32 32 H 1.08998 * 109.47820 * 186.04924 * 7 6 5 33 33 H 1.09000 * 109.46803 * 29.71536 * 11 10 8 34 34 H 1.09000 * 109.47214 * 149.72329 * 11 10 8 35 35 H 0.96998 * 119.99944 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.47173 * 30.28203 * 20 10 8 37 37 H 1.09005 * 109.47077 * 150.28374 * 20 10 8 38 38 H 1.09003 * 109.47272 * 300.00321 * 21 20 10 39 39 H 1.08997 * 109.47273 * 60.00010 * 21 20 10 40 40 H 1.08995 * 109.63730 * 50.85601 * 24 6 5 41 41 H 1.09006 * 109.63327 * 171.46512 * 24 6 5 42 42 H 1.08996 * 109.43514 * 283.57241 * 25 2 1 43 43 H 1.09000 * 109.43046 * 43.47855 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1284 1.1414 0.0000 4 35 1.0965 2.7261 0.0115 5 6 3.6247 1.2645 -0.0081 6 7 4.2422 -0.0074 0.3883 7 6 5.7039 0.0533 0.2570 8 6 6.2566 1.0445 1.2486 9 8 5.5065 1.6418 1.9912 10 7 7.5843 1.2679 1.3094 11 6 8.1217 2.2311 2.2738 12 6 8.1820 3.5967 1.6393 13 1 7.8526 3.7335 0.6198 14 6 8.6567 4.6716 2.3605 15 7 9.0573 4.5050 3.6021 16 14 8.7321 6.3642 1.5739 17 1 8.2276 6.2849 0.1795 18 1 7.8909 7.3093 2.3513 19 1 10.1374 6.8441 1.5658 20 6 8.4908 0.5427 0.4158 21 6 8.9322 -0.7605 1.0850 22 6 9.8425 -1.4894 0.1868 23 7 10.5456 -2.0527 -0.5044 24 6 3.6862 -1.1131 -0.4094 25 6 2.2257 -1.3202 0.0006 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 -0.3633 -0.5138 0.8900 29 1 3.9265 2.0453 0.6901 30 1 3.9572 1.5298 -1.0117 31 1 5.9652 0.3665 -0.7539 32 1 6.1277 -0.9316 0.4531 33 1 7.4753 2.2661 3.1508 34 1 9.1241 1.9249 2.5730 35 1 9.3916 5.2611 4.1094 36 1 7.9761 0.3157 -0.5177 37 1 9.3658 1.1587 0.2078 38 1 9.4469 -0.5334 2.0186 39 1 8.0574 -1.3765 1.2931 40 1 3.7376 -0.8623 -1.4689 41 1 4.2530 -2.0242 -0.2177 42 1 2.1872 -1.7536 0.9999 43 1 1.7439 -1.9956 -0.7064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281101262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:46 Heat of formation + Delta-G solvation = 20.632770 kcal Electronic energy + Delta-G solvation = -25349.451106 eV Core-core repulsion = 21669.664598 eV Total energy + Delta-G solvation = -3679.786508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 369.079 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.92535 -38.61780 -36.88194 -35.37772 -34.84207 -32.89275 -31.94319 -30.85431 -29.75084 -29.31515 -27.56525 -25.70517 -24.02353 -23.79391 -22.82546 -21.83101 -18.57981 -17.69861 -17.48535 -16.77481 -16.47175 -16.06225 -15.52871 -15.31087 -14.88765 -14.76388 -14.50245 -14.11918 -14.02918 -13.71612 -13.53267 -13.22254 -12.93730 -12.74119 -12.57656 -12.45176 -12.27570 -12.13895 -12.02228 -11.79403 -11.53562 -11.30737 -11.28138 -10.99135 -10.91613 -10.85055 -10.68476 -10.63326 -10.18250 -9.71102 -9.69302 -9.05154 -8.72518 -8.47819 -8.27730 -7.84355 -6.09291 -4.13862 1.68070 1.78749 2.70460 2.78700 3.27363 3.27986 3.36610 3.38534 3.45235 3.88400 4.24359 4.41483 4.48328 4.66388 4.87764 4.94767 5.04477 5.07172 5.12541 5.22100 5.26132 5.31749 5.35200 5.37446 5.42589 5.47631 5.55890 5.60383 5.64034 5.80300 5.85025 5.96044 6.04564 6.13956 6.49869 6.80505 6.90983 7.02261 7.36573 7.43155 7.54776 7.86970 8.16793 8.25306 8.84295 8.99519 9.51981 10.98830 Molecular weight = 369.08amu Principal moments of inertia in cm(-1) A = 0.008050 B = 0.003584 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.337093 B = 7809.698683 C =10756.392821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.116 4.116 4 Br -0.065 7.065 5 C 0.092 3.908 6 N -0.510 5.510 7 C 0.032 3.968 8 C 0.507 3.493 9 O -0.512 6.512 10 N -0.598 5.598 11 C 0.246 3.754 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.118 3.882 21 C -0.051 4.051 22 C 0.217 3.783 23 N -0.446 5.446 24 C 0.046 3.954 25 C -0.070 4.070 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.727 -12.088 -8.685 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.195 4.195 4 Br 0.020 6.980 5 C -0.036 4.036 6 N -0.235 5.235 7 C -0.099 4.099 8 C 0.293 3.707 9 O -0.387 6.387 10 N -0.331 5.331 11 C 0.127 3.873 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.009 4.009 21 C -0.093 4.093 22 C -0.101 4.101 23 N -0.123 5.123 24 C -0.082 4.082 25 C -0.109 4.109 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.487 -11.957 -8.633 20.673 hybrid contribution 0.368 0.977 -0.936 1.403 sum -14.119 -10.980 -9.570 20.285 Atomic orbital electron populations 1.21398 0.91539 1.04805 1.02440 1.21095 0.96291 0.94160 0.97141 1.23094 0.96150 0.90745 1.09507 1.96586 1.69946 1.33713 1.97782 1.21194 0.88056 0.93749 1.00577 1.62082 1.03297 1.03474 1.54659 1.22183 0.88498 1.00724 0.98493 1.20135 0.82611 0.83272 0.84714 1.90675 1.56784 1.49080 1.42138 1.48221 1.04872 1.41546 1.38439 1.19346 0.94407 0.85770 0.87769 1.21439 1.42669 0.93047 0.99504 0.92398 1.24902 0.95185 0.99037 0.94768 1.69928 1.42910 1.31458 1.08866 0.86492 0.77558 0.84185 0.79489 1.19813 1.20856 1.21005 1.21300 0.96285 0.90930 0.92395 1.19919 0.96447 0.96006 0.96881 1.29105 0.93764 0.93397 0.93839 1.81193 1.10512 1.10167 1.10453 1.22296 0.95537 0.95031 0.95295 1.20483 0.93706 0.93626 1.03068 0.89958 0.91198 0.90919 0.86020 0.93582 0.92111 0.88058 0.93469 0.94776 0.92728 0.90868 0.88721 0.86405 0.87569 0.94257 0.89806 0.89198 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.82 36.01 0.35 -0.95 16 2 C -0.08 -0.92 5.90 -100.96 -0.60 -1.51 16 3 C -0.12 -1.53 6.23 -36.00 -0.22 -1.75 16 4 Br -0.07 -0.85 30.85 -68.01 -2.10 -2.95 16 5 C 0.09 1.35 4.98 -5.28 -0.03 1.33 16 6 N -0.51 -6.73 4.46 -237.55 -1.06 -7.79 16 7 C 0.03 0.40 3.99 -4.98 -0.02 0.38 16 8 C 0.51 8.98 7.43 -10.98 -0.08 8.90 16 9 O -0.51 -11.52 13.88 5.56 0.08 -11.45 16 10 N -0.60 -10.50 2.46 -175.05 -0.43 -10.93 16 11 C 0.25 5.69 5.17 -5.19 -0.03 5.66 16 12 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 13 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 C 0.12 1.48 5.16 -4.04 -0.02 1.46 16 21 C -0.05 -0.50 6.02 -29.52 -0.18 -0.68 16 22 C 0.22 2.49 15.43 -20.78 -0.32 2.17 16 23 N -0.45 -6.32 18.53 42.14 0.78 -5.54 16 24 C 0.05 0.44 5.59 -3.58 -0.02 0.42 16 25 C -0.07 -0.63 6.05 -28.02 -0.17 -0.80 16 26 H 0.08 0.80 5.22 -51.93 -0.27 0.53 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.12 2.25 5.98 -51.92 -0.31 1.94 16 30 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.06 0.68 7.33 -51.93 -0.38 0.30 16 32 H 0.10 0.96 6.96 -51.93 -0.36 0.60 16 33 H 0.05 1.26 7.41 -51.93 -0.38 0.88 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.07 0.75 6.45 -51.93 -0.33 0.42 16 37 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 38 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.11 0.82 7.20 -51.93 -0.37 0.44 16 40 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 41 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -32.49 374.53 -9.28 -41.78 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.16 Total: -2.39 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.75 Total: 2.08 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.03 Total: -48.84 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -2.10 Total: -2.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.49 -9.28 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281101262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.410 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds