Wall clock time and date at job start Tue Mar 31 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00067 * 2 1 4 4 C 1.53007 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46573 * 65.00241 * 4 3 2 6 6 C 1.46499 * 120.00041 * 274.99385 * 5 4 3 7 7 C 1.50700 * 109.47336 * 279.96288 * 6 5 4 8 8 H 1.07991 * 119.99957 * 1.41542 * 7 6 5 9 9 C 1.37878 * 119.99766 * 181.41023 * 7 6 5 10 10 N 1.31515 * 120.00082 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00084 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47429 * 89.99810 * 11 9 7 13 13 H 1.48500 * 109.47246 * 209.99665 * 11 9 7 14 14 H 1.48496 * 109.47221 * 329.99607 * 11 9 7 15 15 S 1.65599 * 119.99995 * 95.00353 * 5 4 3 16 16 O 1.42096 * 106.40176 * 330.46054 * 15 5 4 17 17 O 1.42106 * 106.40230 * 197.53871 * 15 5 4 18 18 N 1.65609 * 107.21825 * 83.99930 * 15 5 4 19 19 C 1.47228 * 121.33607 * 95.61955 * 18 15 5 20 20 C 1.52799 * 107.89533 * 244.24105 * 19 18 15 21 21 C 1.50603 * 110.85091 * 312.52037 * 20 19 18 22 22 C 1.38977 * 117.61540 * 199.69258 * 21 20 19 23 23 C 1.37912 * 120.57910 * 180.73284 * 22 21 20 24 24 C 1.38257 * 119.82722 * 359.91596 * 23 22 21 25 25 C 1.37953 * 119.72017 * 359.78809 * 24 23 22 26 26 C 1.37671 * 122.86408 * 20.02773 * 21 20 19 27 27 C 1.46683 * 121.33820 * 275.59245 * 18 15 5 28 28 H 1.09007 * 109.40173 * 15.62774 * 27 18 15 29 29 C 1.53002 * 109.43550 * 255.73908 * 27 18 15 30 30 H 1.08998 * 109.46366 * 299.99946 * 1 2 3 31 31 H 1.09002 * 109.47284 * 59.99217 * 1 2 3 32 32 H 1.08997 * 109.46970 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47451 * 60.00653 * 3 2 1 34 34 H 1.09002 * 109.47529 * 300.00157 * 3 2 1 35 35 H 1.08995 * 109.47076 * 305.00539 * 4 3 2 36 36 H 1.09003 * 109.47225 * 184.99911 * 4 3 2 37 37 H 1.09002 * 109.46758 * 39.96286 * 6 5 4 38 38 H 1.08997 * 109.46842 * 159.96077 * 6 5 4 39 39 H 0.96996 * 120.00191 * 180.02562 * 10 9 7 40 40 H 1.09000 * 109.78098 * 3.83874 * 19 18 15 41 41 H 1.09000 * 109.77522 * 124.64768 * 19 18 15 42 42 H 1.08994 * 109.20147 * 72.87161 * 20 19 18 43 43 H 1.09003 * 109.20116 * 192.17009 * 20 19 18 44 44 H 1.07999 * 119.71243 * 0.71271 * 22 21 20 45 45 H 1.07998 * 120.08306 * 179.88765 * 23 22 21 46 46 H 1.08004 * 120.14117 * 179.80904 * 24 23 22 47 47 H 1.07997 * 119.75055 * 180.46557 * 25 24 23 48 48 H 1.09002 * 109.47114 * 294.04391 * 29 27 18 49 49 H 1.08998 * 109.47648 * 54.04631 * 29 27 18 50 50 H 1.09003 * 109.46886 * 174.04864 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2529 6 6 4.0004 -0.8950 -1.3783 7 6 5.2432 -1.4350 -0.7189 8 1 5.9330 -0.7609 -0.2331 9 6 5.4996 -2.7896 -0.7359 10 7 6.5844 -3.2608 -0.1609 11 14 4.3067 -3.9555 -1.5767 12 1 4.6931 -4.1165 -3.0016 13 1 4.3466 -5.2771 -0.9007 14 1 2.9319 -3.3999 -1.4965 15 16 4.4453 1.5130 -2.5264 16 8 3.7094 2.7236 -2.4177 17 8 4.4105 0.6830 -3.6793 18 7 6.0349 1.9086 -2.2829 19 6 7.1208 1.1344 -2.9067 20 6 7.9301 0.4768 -1.7898 21 6 8.2572 1.4717 -0.7076 22 6 9.3101 1.1701 0.1480 23 6 9.6524 2.0307 1.1698 24 6 8.9447 3.2053 1.3457 25 6 7.9030 3.5102 0.4942 26 6 7.5578 2.6449 -0.5352 27 6 6.4175 3.0446 -1.4375 28 1 5.5642 3.3482 -0.8310 29 6 6.8543 4.2136 -2.3228 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8515 0.5681 0.8408 36 1 3.9786 2.1764 0.0889 37 1 3.1196 -1.3163 -0.8936 38 1 4.0005 -1.1690 -2.4333 39 1 6.7650 -4.2137 -0.1731 40 1 6.7005 0.3680 -3.5579 41 1 7.7627 1.7992 -3.4847 42 1 7.3511 -0.3413 -1.3616 43 1 8.8570 0.0804 -2.2044 44 1 9.8648 0.2535 0.0117 45 1 10.4709 1.7875 1.8311 46 1 9.2065 3.8815 2.1462 47 1 7.3547 4.4312 0.6265 48 1 7.7686 3.9462 -2.8526 49 1 6.0683 4.4366 -3.0442 50 1 7.0374 5.0907 -1.7021 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282818299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:48 Heat of formation + Delta-G solvation = -87.707364 kcal Electronic energy + Delta-G solvation = -34434.340428 eV Core-core repulsion = 30167.586337 eV Total energy + Delta-G solvation = -4266.754091 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.160 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.83282 -37.82234 -36.81831 -36.52613 -35.45437 -35.30939 -33.17769 -32.46665 -30.99384 -29.77482 -29.49426 -27.62274 -27.11931 -25.78548 -23.43970 -23.39490 -22.61110 -21.67327 -21.52023 -19.76059 -18.09576 -17.36502 -17.10583 -16.80307 -16.57703 -15.96642 -15.73133 -15.48395 -14.84775 -14.80554 -14.66560 -14.57787 -14.17680 -13.82546 -13.66525 -13.28715 -13.11573 -12.90335 -12.54424 -12.46133 -12.29103 -12.22020 -12.17333 -12.04743 -11.85261 -11.79512 -11.58422 -11.39255 -11.34350 -11.30690 -11.19878 -11.11897 -10.88040 -10.73727 -10.47767 -10.31329 -10.17701 -10.13577 -9.46651 -9.35477 -8.81148 -8.56904 -8.46410 -8.21422 -8.00861 -6.09328 -4.07345 1.13587 1.61954 1.69082 3.30365 3.34613 3.40626 3.46220 3.99135 4.02630 4.09050 4.43253 4.70160 4.80074 5.04490 5.15073 5.19122 5.24524 5.25536 5.32405 5.36106 5.37024 5.42906 5.49972 5.58208 5.60190 5.63960 5.68968 5.73422 5.77224 5.82790 5.84666 5.91513 5.96690 6.06957 6.23364 6.26374 6.29441 6.31178 6.42841 6.48760 6.69177 6.79505 6.87055 6.93942 7.04636 7.09073 7.29474 7.31462 7.42174 7.52350 7.68002 8.49119 8.94020 9.52922 11.02009 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.008467 B = 0.005213 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.013618 B = 5370.243303 C = 6699.906352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.043 3.957 4 C 0.137 3.863 5 N -0.977 5.977 6 C 0.213 3.787 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.894 5.894 11 Si 0.864 3.136 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.261 1.261 15 S 2.783 3.217 16 O -0.995 6.995 17 O -0.976 6.976 18 N -1.000 6.000 19 C 0.130 3.870 20 C -0.120 4.120 21 C -0.037 4.037 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.115 4.115 26 C -0.092 4.092 27 C 0.199 3.801 28 H 0.091 0.909 29 C -0.155 4.155 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.263 0.737 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 13.048 0.907 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.817 5.817 6 C 0.090 3.910 7 C -0.573 4.573 8 H 0.103 0.897 9 C -0.125 4.125 10 N -0.533 5.533 11 Si 0.691 3.309 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.185 1.185 15 S 2.793 3.207 16 O -0.979 6.979 17 O -0.961 6.961 18 N -0.837 5.837 19 C 0.005 3.995 20 C -0.158 4.158 21 C -0.037 4.037 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.151 4.151 25 C -0.134 4.134 26 C -0.094 4.094 27 C 0.092 3.908 28 H 0.109 0.891 29 C -0.214 4.214 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.147 0.853 43 H 0.094 0.906 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.021 12.951 0.168 12.952 hybrid contribution -0.405 -0.706 0.189 0.835 sum -0.425 12.245 0.357 12.258 Atomic orbital electron populations 1.22710 0.82319 1.02370 0.99306 1.88065 1.18496 1.27337 1.95202 1.23134 0.95310 0.85043 1.00091 1.21084 0.91185 0.97627 0.89097 1.57453 1.78603 1.18323 1.27340 1.19679 0.99116 0.74300 0.97910 1.21472 1.06323 0.93146 1.36337 0.89690 1.24787 0.94935 0.97977 0.94792 1.69886 1.25537 1.13815 1.44018 0.87020 0.82976 0.80769 0.80159 1.20002 1.21335 1.18546 1.01838 0.72468 0.72575 0.73781 1.93538 1.70082 1.46801 1.87514 1.93556 1.86254 1.68666 1.47594 1.58354 1.24362 1.39536 1.61477 1.21320 0.88685 0.94743 0.94790 1.21203 1.01319 0.98722 0.94518 1.19547 0.93739 0.93819 0.96576 1.21225 0.97581 0.99356 0.95378 1.21008 0.99934 0.94780 0.98022 1.20909 0.96877 0.97619 0.99705 1.20940 0.98020 0.99133 0.95307 1.19664 0.97773 0.95089 0.96851 1.19552 0.95594 0.85685 0.89996 0.89082 1.22150 1.02095 0.97006 1.00148 0.94583 0.94559 0.89966 0.92996 0.93016 0.88714 0.90561 0.92985 0.94312 0.92707 0.88301 0.91703 0.85283 0.90570 0.86107 0.86590 0.86602 0.86516 0.92046 0.91793 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.57 8.99 -35.23 -0.32 -6.89 16 3 C 0.04 0.68 6.28 37.16 0.23 0.91 16 4 C 0.14 2.35 5.75 -4.04 -0.02 2.33 16 5 N -0.98 -19.60 2.83 -115.66 -0.33 -19.93 16 6 C 0.21 4.99 4.39 -5.19 -0.02 4.96 16 7 C -0.53 -13.67 8.82 -34.44 -0.30 -13.97 16 8 H 0.09 2.29 6.60 -52.49 -0.35 1.94 16 9 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 10 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 11 Si 0.86 20.94 27.44 -169.99 -4.66 16.27 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -6.20 6.58 56.52 0.37 -5.83 16 15 S 2.78 54.04 6.04 -107.50 -0.65 53.39 16 16 O -1.00 -19.29 16.29 -57.17 -0.93 -20.23 16 17 O -0.98 -21.71 15.10 -57.17 -0.86 -22.57 16 18 N -1.00 -16.81 2.96 -107.91 -0.32 -17.12 16 19 C 0.13 2.11 6.35 -3.75 -0.02 2.09 16 20 C -0.12 -2.05 5.87 -28.03 -0.16 -2.22 16 21 C -0.04 -0.59 5.76 -104.60 -0.60 -1.20 16 22 C -0.12 -1.80 9.59 -39.43 -0.38 -2.18 16 23 C -0.12 -1.61 10.04 -39.69 -0.40 -2.01 16 24 C -0.13 -1.67 10.05 -39.68 -0.40 -2.06 16 25 C -0.12 -1.49 9.35 -39.46 -0.37 -1.86 16 26 C -0.09 -1.37 5.17 -104.55 -0.54 -1.91 16 27 C 0.20 2.88 2.69 -68.93 -0.19 2.70 16 28 H 0.09 1.27 6.73 -51.93 -0.35 0.92 16 29 C -0.16 -1.89 9.14 37.16 0.34 -1.55 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.83 7.98 -51.93 -0.41 0.42 16 35 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 36 H 0.08 1.12 6.93 -51.93 -0.36 0.76 16 37 H 0.05 1.26 5.72 -51.93 -0.30 0.96 16 38 H 0.04 0.96 6.13 -51.93 -0.32 0.64 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.10 1.73 6.91 -51.93 -0.36 1.37 16 41 H 0.06 0.89 7.50 -51.93 -0.39 0.50 16 42 H 0.13 2.75 5.37 -51.93 -0.28 2.47 16 43 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 44 H 0.12 1.80 8.05 -52.49 -0.42 1.37 16 45 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 47 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 48 H 0.06 0.73 7.57 -51.93 -0.39 0.33 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.07 0.66 8.05 -51.93 -0.42 0.25 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -31.39 403.07 -10.78 -42.18 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.73 Total: 5.78 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -1.82 Total: -12.46 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.13 Total: -61.55 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -2.11 Total: -49.69 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.66 Total: 16.27 kcal Atomic # 16 Polarization: 54.04 SS G_CDS: -0.65 Total: 53.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.39 -10.78 -42.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282818299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.531 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds