Wall clock time and date at job start Tue Mar 31 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00156 * 2 1 4 4 C 1.38732 * 120.05861 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.94810 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05256 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.94242 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47157 * 95.79508 * 7 6 5 9 9 C 1.46495 * 120.00533 * 273.39463 * 8 7 6 10 10 C 1.53005 * 117.49299 * 1.97240 * 9 8 7 11 11 C 1.53003 * 117.49922 * 293.31635 * 9 8 7 12 12 S 1.65605 * 119.99625 * 93.39798 * 8 7 6 13 13 O 1.42100 * 106.40396 * 336.45632 * 12 8 7 14 14 O 1.42109 * 106.40189 * 203.53617 * 12 8 7 15 15 N 1.65597 * 107.21805 * 89.99959 * 12 8 7 16 16 C 1.46506 * 120.00244 * 90.00022 * 15 12 8 17 17 C 1.46499 * 120.00239 * 269.99675 * 15 12 8 18 18 H 1.09002 * 109.46589 * 359.97438 * 17 15 12 19 19 C 1.52999 * 109.47212 * 240.00424 * 17 15 12 20 20 C 1.50692 * 109.47276 * 119.99885 * 17 15 12 21 21 H 1.07999 * 120.00098 * 0.02562 * 20 17 15 22 22 C 1.37882 * 120.00061 * 180.02562 * 20 17 15 23 23 N 1.31511 * 119.99926 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99826 * 180.02562 * 22 20 17 25 25 H 1.48500 * 109.47366 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47147 * 120.00433 * 24 22 20 27 27 H 1.48504 * 109.46680 * 240.00039 * 24 22 20 28 28 C 1.38264 * 120.11395 * 0.27465 * 6 5 4 29 29 C 1.38142 * 120.05601 * 359.45569 * 28 6 5 30 30 H 1.08995 * 109.46859 * 300.00161 * 1 2 3 31 31 H 1.09006 * 109.47101 * 59.99988 * 1 2 3 32 32 H 1.09000 * 109.46820 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.02296 * 359.95717 * 4 3 2 34 34 H 1.07999 * 119.97531 * 179.97438 * 5 4 3 35 35 H 1.08992 * 109.46794 * 335.79415 * 7 6 5 36 36 H 1.09002 * 109.46609 * 215.79546 * 7 6 5 37 37 H 1.08994 * 115.55338 * 147.64107 * 9 8 7 38 38 H 1.09001 * 117.50126 * 0.02562 * 10 9 8 39 39 H 1.09007 * 117.49369 * 145.01660 * 10 9 8 40 40 H 1.08992 * 117.49709 * 214.97517 * 11 9 8 41 41 H 1.08996 * 117.49692 * 359.97039 * 11 9 8 42 42 H 1.08999 * 109.47504 * 89.99619 * 16 15 12 43 43 H 1.08995 * 109.47222 * 210.00163 * 16 15 12 44 44 H 1.09003 * 109.46705 * 330.00083 * 16 15 12 45 45 H 1.08992 * 109.47597 * 59.99587 * 19 17 15 46 46 H 1.08998 * 109.46947 * 179.97438 * 19 17 15 47 47 H 1.09002 * 109.46928 * 299.99282 * 19 17 15 48 48 H 0.96994 * 119.99915 * 180.02562 * 23 22 20 49 49 H 1.08009 * 119.97251 * 179.70491 * 28 6 5 50 50 H 1.07997 * 120.03316 * 180.27924 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0185 -0.0028 8 7 4.0843 5.5154 -1.3774 9 6 5.2216 5.1297 -2.2164 10 6 6.2494 4.1690 -1.6149 11 6 6.6044 5.6449 -1.8123 12 16 2.9094 6.5132 -1.9828 13 8 1.7389 6.2663 -1.2160 14 8 2.9558 6.3759 -3.3965 15 7 3.3678 8.0690 -1.6489 16 6 4.1882 8.8129 -2.6080 17 6 2.9528 8.7017 -0.3944 18 1 2.3530 8.0000 0.1853 19 6 2.1218 9.9488 -0.7026 20 6 4.1731 9.0942 0.3979 21 1 5.1591 8.8930 0.0060 22 6 4.0308 9.7103 1.6232 23 7 2.8300 9.9549 2.1007 24 14 5.5435 10.1976 2.6049 25 1 6.7658 9.8146 1.8535 26 1 5.5378 11.6659 2.8268 27 1 5.5293 9.4989 3.9152 28 6 1.9212 3.6047 0.0031 29 6 1.2916 2.3751 -0.0020 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0209 0.3799 0.0017 34 1 5.1346 2.5749 0.0008 35 1 4.9860 4.9170 0.4191 36 1 3.4081 5.7212 0.5973 37 1 5.0102 5.0382 -3.2817 38 1 6.0791 3.8237 -0.5952 39 1 6.7144 3.4457 -2.2848 40 1 7.3028 5.8919 -2.6117 41 1 6.6679 6.2711 -0.9224 42 1 3.5403 9.3464 -3.3035 43 1 4.8140 9.5275 -2.0734 44 1 4.8207 8.1182 -3.1607 45 1 1.2392 9.6649 -1.2756 46 1 1.8128 10.4192 0.2308 47 1 2.7213 10.6506 -1.2824 48 1 2.7299 10.3886 2.9624 49 1 1.3343 4.5114 0.0066 50 1 0.2130 2.3201 -0.0029 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282914968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:24 Heat of formation + Delta-G solvation = -46.907620 kcal Electronic energy + Delta-G solvation = -33430.012300 eV Core-core repulsion = 29165.027418 eV Total energy + Delta-G solvation = -4264.984882 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.160 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.14354 -38.50247 -37.18758 -36.61681 -36.13164 -35.25726 -33.35731 -32.61903 -30.96935 -30.27409 -29.09220 -27.61042 -25.54476 -25.36637 -25.20350 -22.86739 -22.08786 -21.75829 -20.93719 -20.54102 -18.41244 -18.16582 -17.43087 -16.84317 -16.56523 -16.12120 -15.98196 -15.79235 -15.40214 -15.11816 -14.71870 -14.43688 -14.16911 -13.78952 -13.52199 -13.34978 -13.23681 -12.99699 -12.70058 -12.43430 -12.27135 -12.13125 -11.97086 -11.90800 -11.77345 -11.56528 -11.42521 -11.39008 -11.24800 -11.15730 -11.06362 -10.99057 -10.89732 -10.74477 -10.51572 -10.41391 -10.26406 -10.22179 -10.08210 -9.31388 -8.88080 -8.59722 -8.51646 -8.09090 -7.92361 -6.13028 -4.21436 1.10866 1.46407 1.54608 3.20723 3.21757 3.29641 3.30963 3.37224 3.86551 3.92542 4.12380 4.32405 4.72736 4.81666 4.89827 4.94609 5.00076 5.02419 5.06396 5.07572 5.15424 5.17762 5.28448 5.31586 5.47844 5.52979 5.63411 5.69497 5.72273 5.84209 5.94372 6.09824 6.18481 6.21333 6.23912 6.30922 6.35779 6.43258 6.53621 6.63907 6.74486 6.84496 6.85404 6.86715 6.96060 7.09690 7.39423 7.47990 7.60216 7.74617 8.02100 8.23095 8.82512 9.45278 10.91857 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.003505 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.153146 B = 7987.745565 C = 8266.292913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.322 6.322 3 C 0.122 3.878 4 C -0.160 4.160 5 C -0.068 4.068 6 C -0.139 4.139 7 C 0.167 3.833 8 N -0.971 5.971 9 C 0.084 3.916 10 C -0.185 4.185 11 C -0.193 4.193 12 S 2.782 3.218 13 O -0.976 6.976 14 O -0.996 6.996 15 N -0.989 5.989 16 C 0.108 3.892 17 C 0.268 3.732 18 H 0.058 0.942 19 C -0.145 4.145 20 C -0.525 4.525 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.894 3.106 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C -0.062 4.062 29 C -0.211 4.211 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.011 0.989 46 H 0.092 0.908 47 H 0.032 0.968 48 H 0.263 0.737 49 H 0.151 0.849 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -14.061 -4.807 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.178 4.178 5 C -0.087 4.087 6 C -0.141 4.141 7 C 0.042 3.958 8 N -0.805 5.805 9 C -0.023 4.023 10 C -0.223 4.223 11 C -0.232 4.232 12 S 2.793 3.207 13 O -0.960 6.960 14 O -0.981 6.981 15 N -0.831 5.831 16 C -0.039 4.039 17 C 0.165 3.835 18 H 0.075 0.925 19 C -0.205 4.205 20 C -0.564 4.564 21 H 0.082 0.918 22 C -0.137 4.137 23 N -0.524 5.524 24 Si 0.722 3.278 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.081 4.081 29 C -0.229 4.229 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.030 0.970 46 H 0.111 0.889 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.169 0.831 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.491 -14.418 -5.109 15.369 hybrid contribution 0.916 0.587 0.835 1.371 sum 2.407 -13.831 -4.274 14.675 Atomic orbital electron populations 1.23032 0.78587 1.03590 1.01568 1.86027 1.21271 1.27289 1.88958 1.19082 0.92435 0.83980 0.96812 1.20320 0.91226 0.98415 1.07883 1.20975 0.99714 0.90969 0.97017 1.20249 0.94027 0.95720 1.04078 1.20082 1.01291 0.92092 0.82321 1.57752 1.38507 1.63148 1.21119 1.21411 0.82328 1.03859 0.94719 1.23420 1.02677 0.93435 1.02786 1.23459 0.98784 0.96539 1.04451 1.01895 0.73430 0.72690 0.72673 1.93519 1.45215 1.84949 1.72364 1.93515 1.87258 1.86700 1.30580 1.57770 1.66216 1.29135 1.29959 1.21168 0.94442 0.97016 0.91245 1.18723 0.94547 0.92048 0.78173 0.92474 1.22055 0.96986 0.99449 1.01976 1.21414 0.92748 1.39539 1.02711 0.91812 1.24914 0.95908 0.95509 0.97411 1.69885 1.21138 1.42186 1.19194 0.86516 0.83038 0.78265 0.79999 1.19793 1.21031 1.20986 1.21480 0.94561 0.98328 0.93699 1.21277 1.00020 0.92310 1.09333 0.92593 0.92636 0.88499 0.85568 0.85226 0.89714 0.88143 0.84990 0.87863 0.88368 0.88424 0.87762 0.94057 0.90236 0.93140 0.96956 0.88924 0.94890 0.92699 0.83146 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.98 10.50 -19.41 -0.20 -4.18 16 3 C 0.12 1.66 6.69 -39.21 -0.26 1.40 16 4 C -0.16 -2.04 9.99 -39.43 -0.39 -2.44 16 5 C -0.07 -0.87 9.06 -39.61 -0.36 -1.23 16 6 C -0.14 -2.07 5.46 -104.60 -0.57 -2.65 16 7 C 0.17 2.60 4.97 -5.19 -0.03 2.58 16 8 N -0.97 -15.79 3.15 -108.58 -0.34 -16.13 16 9 C 0.08 1.16 6.31 -67.93 -0.43 0.73 16 10 C -0.18 -2.01 9.10 -26.69 -0.24 -2.25 16 11 C -0.19 -2.32 10.36 -26.69 -0.28 -2.59 16 12 S 2.78 54.31 6.01 -107.50 -0.65 53.66 16 13 O -0.98 -20.93 13.20 -57.17 -0.75 -21.69 16 14 O -1.00 -20.62 16.06 -57.17 -0.92 -21.54 16 15 N -0.99 -20.11 3.12 -115.85 -0.36 -20.47 16 16 C 0.11 1.92 9.28 59.85 0.56 2.48 16 17 C 0.27 6.30 2.62 -69.09 -0.18 6.11 16 18 H 0.06 1.47 6.91 -51.93 -0.36 1.11 16 19 C -0.14 -3.39 8.97 37.16 0.33 -3.06 16 20 C -0.52 -12.89 7.99 -34.44 -0.28 -13.16 16 21 H 0.06 1.53 7.33 -52.49 -0.38 1.15 16 22 C 0.07 1.66 5.30 -17.82 -0.09 1.56 16 23 N -0.89 -23.57 11.32 55.43 0.63 -22.94 16 24 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C -0.06 -0.99 9.25 -39.61 -0.37 -1.36 16 29 C -0.21 -2.98 9.04 -39.43 -0.36 -3.34 16 30 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 31 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.13 1.35 5.55 -52.49 -0.29 1.06 16 35 H 0.08 1.15 6.27 -51.93 -0.33 0.82 16 36 H 0.10 1.77 7.65 -51.93 -0.40 1.37 16 37 H 0.13 1.82 7.49 -51.93 -0.39 1.43 16 38 H 0.10 1.08 3.79 -51.93 -0.20 0.89 16 39 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 44 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 47 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 48 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 49 H 0.15 2.65 5.98 -52.48 -0.31 2.34 16 50 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 LS Contribution 404.80 15.07 6.10 6.10 Total: -1.00 -30.07 404.80 -10.83 -40.90 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.36 Total: 7.49 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.95 Total: -15.98 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.08 Total: -59.54 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.88 Total: -47.41 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 54.31 SS G_CDS: -0.65 Total: 53.66 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.07 -10.83 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282914968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.006 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds