Wall clock time and date at job start Tue Mar 31 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47160 * 2 1 4 4 C 1.52997 * 109.46980 * 239.99557 * 2 1 3 5 5 O 1.45206 * 109.46865 * 120.00231 * 2 1 3 6 6 C 1.34634 * 117.00222 * 59.99848 * 5 2 1 7 7 O 1.21507 * 120.00154 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99724 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49433 * 0.02562 * 8 6 5 10 10 C 1.53941 * 86.11719 * 204.63802 * 9 8 6 11 11 C 1.47578 * 134.48993 * 179.97438 * 8 6 5 12 12 H 1.08998 * 113.87131 * 269.67544 * 11 8 6 13 13 C 1.50700 * 113.76934 * 41.05949 * 11 8 6 14 14 O 1.21271 * 119.99800 * 356.49293 * 13 11 8 15 15 N 1.34779 * 119.99597 * 176.49139 * 13 11 8 16 16 C 1.46964 * 120.59023 * 179.97438 * 15 13 11 17 17 C 1.53375 * 108.63546 * 235.25145 * 16 15 13 18 18 N 1.46965 * 108.63206 * 310.57299 * 17 16 15 19 19 C 1.34769 * 120.59408 * 235.20143 * 18 17 16 20 20 O 1.21689 * 119.99939 * 184.91002 * 19 18 17 21 21 C 1.46374 * 120.00266 * 4.91314 * 19 18 17 22 22 H 1.07995 * 119.99695 * 345.18586 * 21 19 18 23 23 C 1.40045 * 119.99797 * 164.91130 * 21 19 18 24 24 N 1.30680 * 119.99799 * 171.32803 * 23 21 19 25 25 Si 1.86793 * 120.00505 * 351.32881 * 23 21 19 26 26 H 1.48501 * 109.47517 * 85.31862 * 25 23 21 27 27 H 1.48505 * 109.47436 * 205.32151 * 25 23 21 28 28 H 1.48506 * 109.47008 * 325.31968 * 25 23 21 29 29 C 1.46964 * 118.80804 * 55.48507 * 18 17 16 30 30 C 1.46959 * 120.59777 * 0.02604 * 15 13 11 31 31 H 1.08998 * 109.47389 * 300.00130 * 1 2 3 32 32 H 1.09002 * 109.47259 * 60.00219 * 1 2 3 33 33 H 1.09004 * 109.47277 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46534 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47066 * 299.99528 * 3 2 1 36 36 H 1.08993 * 109.47341 * 60.00079 * 3 2 1 37 37 H 1.09004 * 109.47472 * 300.00316 * 4 2 1 38 38 H 1.09000 * 109.47244 * 60.00473 * 4 2 1 39 39 H 1.09000 * 109.47282 * 180.02562 * 4 2 1 40 40 H 1.09003 * 113.77097 * 90.33299 * 9 8 6 41 41 H 1.09004 * 113.76856 * 318.94132 * 9 8 6 42 42 H 1.08997 * 113.74315 * 222.04503 * 10 9 8 43 43 H 1.09002 * 113.83801 * 90.74664 * 10 9 8 44 44 H 1.08997 * 109.60884 * 115.50687 * 16 15 13 45 45 H 1.09004 * 109.61272 * 354.99231 * 16 15 13 46 46 H 1.08998 * 109.60912 * 190.83309 * 17 16 15 47 47 H 1.09000 * 109.75089 * 70.40625 * 17 16 15 48 48 H 0.96998 * 120.00267 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.61723 * 64.25967 * 29 18 17 50 50 H 1.09005 * 109.61211 * 184.77584 * 29 18 17 51 51 H 1.09001 * 109.61297 * 244.49713 * 30 15 13 52 52 H 1.09007 * 109.60836 * 5.00399 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6846 1.1856 6 6 1.6521 -1.9724 1.3384 7 8 0.9508 -2.5095 0.5041 8 7 2.0680 -2.6658 2.4168 9 6 2.9008 -2.3477 3.5928 10 6 3.1945 -3.8572 3.6623 11 6 1.8725 -4.0478 2.8961 12 1 1.0039 -4.1716 3.5428 13 6 1.9462 -5.0851 1.8055 14 8 2.0869 -4.7420 0.6509 15 7 1.8558 -6.3941 2.1134 16 6 1.9256 -7.4167 1.0602 17 6 0.6749 -8.3000 1.1510 18 7 0.5044 -8.7303 2.5459 19 6 0.4130 -10.0393 2.8536 20 8 0.1827 -10.3805 3.9987 21 6 0.5909 -11.0505 1.8104 22 1 0.5560 -10.7645 0.7696 23 6 0.8120 -12.3879 2.1621 24 7 0.8018 -13.3157 1.2419 25 14 1.1214 -12.8457 3.9464 26 1 -0.1773 -13.0331 4.6418 27 1 1.9013 -14.1080 4.0056 28 1 1.8862 -11.7597 4.6105 29 6 0.4290 -7.7074 3.5984 30 6 1.6846 -6.8244 3.5081 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4423 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6765 -1.7490 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1299 -0.7218 -1.2490 40 1 2.3336 -1.9708 4.4439 41 1 3.7755 -1.7401 3.3604 42 1 3.1771 -4.2616 4.6743 43 1 4.0767 -4.1608 3.0985 44 1 2.8165 -8.0283 1.2025 45 1 1.9623 -6.9341 0.0835 46 1 0.7969 -9.1738 0.5110 47 1 -0.2002 -7.7331 0.8334 48 1 0.9553 -14.2420 1.4853 49 1 -0.4620 -7.0967 3.4520 50 1 0.3885 -8.1898 4.5751 51 1 2.5584 -7.3937 3.8252 52 1 1.5623 -5.9506 4.1481 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408519559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:02 Heat of formation + Delta-G solvation = -97.403536 kcal Electronic energy + Delta-G solvation = -35011.217715 eV Core-core repulsion = 30399.008957 eV Total energy + Delta-G solvation = -4612.208758 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 367.199 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.26380 -40.19592 -38.99891 -37.88177 -36.51020 -36.11180 -34.16426 -33.32990 -32.91602 -31.21569 -29.96282 -28.37688 -27.64083 -27.53972 -26.90159 -26.13441 -23.49343 -23.22215 -22.50543 -21.15785 -20.28788 -19.33688 -18.75539 -17.97645 -17.64550 -16.75884 -16.67551 -16.22642 -15.86277 -15.72800 -15.27858 -14.95931 -14.91533 -14.66811 -14.48124 -14.32749 -14.26774 -13.92138 -13.45628 -13.36016 -13.11041 -12.86310 -12.72107 -12.60782 -12.39553 -12.29023 -12.19879 -12.09624 -12.08305 -12.00758 -11.85049 -11.77556 -11.52210 -11.38932 -11.28962 -11.17312 -10.87101 -10.83093 -10.47804 -10.43576 -10.04512 -9.70609 -9.53631 -9.08138 -8.93882 -8.73227 -8.00044 -7.56795 -6.67478 -4.90049 1.69076 2.60708 2.81046 3.04569 3.40035 3.44651 3.53860 3.66815 3.90791 4.06878 4.14907 4.32291 4.47610 4.48767 4.51432 4.55047 4.69514 4.71975 4.83732 4.98925 5.06368 5.11608 5.16362 5.22112 5.28209 5.31463 5.34656 5.39781 5.45864 5.50231 5.52802 5.58362 5.66050 5.67532 5.75726 5.76601 5.84395 5.95848 6.10457 6.13051 6.19267 6.22407 6.39117 6.39980 6.63680 6.96400 7.41735 7.50042 7.52329 7.80066 8.20982 8.23543 8.37869 8.63609 9.04203 9.93943 10.33095 Molecular weight = 367.20amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.002120 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.486178 B =13207.462968 C =13869.368891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.672 3.328 7 O -0.534 6.534 8 N -0.621 5.621 9 C 0.110 3.890 10 C -0.139 4.139 11 C 0.139 3.861 12 H 0.119 0.881 13 C 0.505 3.495 14 O -0.507 6.507 15 N -0.605 5.605 16 C 0.100 3.900 17 C 0.108 3.892 18 N -0.633 5.633 19 C 0.554 3.446 20 O -0.616 6.616 21 C -0.533 4.533 22 H 0.091 0.909 23 C 0.101 3.899 24 N -0.826 5.826 25 Si 0.967 3.033 26 H -0.278 1.278 27 H -0.321 1.321 28 H -0.265 1.265 29 C 0.104 3.896 30 C 0.093 3.907 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.111 0.889 47 H 0.052 0.948 48 H 0.283 0.717 49 H 0.052 0.948 50 H 0.099 0.901 51 H 0.077 0.923 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 26.847 3.185 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.428 3.572 7 O -0.419 6.419 8 N -0.365 5.365 9 C -0.012 4.012 10 C -0.177 4.177 11 C 0.033 3.967 12 H 0.137 0.863 13 C 0.290 3.710 14 O -0.380 6.380 15 N -0.340 5.340 16 C -0.023 4.023 17 C -0.017 4.017 18 N -0.367 5.367 19 C 0.364 3.636 20 O -0.508 6.508 21 C -0.569 4.569 22 H 0.109 0.891 23 C -0.117 4.117 24 N -0.455 5.455 25 Si 0.800 3.200 26 H -0.204 1.204 27 H -0.252 1.252 28 H -0.191 1.191 29 C -0.021 4.021 30 C -0.031 4.031 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.129 0.871 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.117 0.883 51 H 0.095 0.905 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.461 26.731 2.465 27.394 hybrid contribution -0.079 -0.179 0.555 0.588 sum 5.382 26.552 3.020 27.260 Atomic orbital electron populations 1.22508 0.94112 1.05125 1.02247 1.22043 0.94281 0.91334 0.82343 1.21843 1.02160 0.92629 1.02948 1.22514 1.01475 1.03902 0.96180 1.86264 1.72062 1.23552 1.46301 1.17423 0.78529 0.79970 0.81274 1.90970 1.39731 1.69534 1.41711 1.48353 1.55166 1.11997 1.20965 1.23161 0.94286 0.96744 0.87016 1.23619 0.96455 0.96087 1.01578 1.22768 1.00407 0.80622 0.92890 0.86330 1.20317 0.77800 0.82885 0.89954 1.90789 1.47429 1.79850 1.19963 1.48046 1.72228 1.05174 1.08578 1.22105 0.99454 0.89119 0.91624 1.21905 0.95546 0.99141 0.85115 1.47664 1.77931 1.05673 1.05449 1.18340 0.76023 0.80730 0.88462 1.90209 1.57896 1.78595 1.24073 1.20763 1.51152 0.90880 0.94077 0.89081 1.25772 0.89728 0.95337 1.00851 1.69560 1.37598 1.02126 1.36211 0.85225 0.78979 0.74465 0.81355 1.20424 1.25241 1.19055 1.21687 0.95165 0.90320 0.94934 1.22326 1.00081 0.98984 0.81669 0.92372 0.91191 0.89352 0.91571 0.90187 0.91635 0.88933 0.91349 0.92331 0.89087 0.89335 0.88039 0.88107 0.90804 0.88679 0.87072 0.93019 0.90722 0.92993 0.88292 0.90482 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 2 C 0.14 1.44 1.13 -90.63 -0.10 1.34 16 3 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 4 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 5 O -0.37 -4.61 9.87 -40.31 -0.40 -5.01 16 6 C 0.67 9.79 7.77 54.06 0.42 10.21 16 7 O -0.53 -9.42 10.47 -26.57 -0.28 -9.70 16 8 N -0.62 -7.33 3.41 -178.30 -0.61 -7.93 16 9 C 0.11 0.75 8.87 -2.98 -0.03 0.72 16 10 C -0.14 -0.93 7.49 -25.79 -0.19 -1.12 16 11 C 0.14 1.47 3.23 -68.00 -0.22 1.25 16 12 H 0.12 1.01 7.39 -51.93 -0.38 0.63 16 13 C 0.51 7.43 7.19 -10.98 -0.08 7.35 16 14 O -0.51 -9.57 13.67 -16.23 -0.22 -9.79 16 15 N -0.61 -8.63 2.95 -172.24 -0.51 -9.14 16 16 C 0.10 1.58 6.59 -3.59 -0.02 1.56 16 17 C 0.11 1.93 6.50 -3.59 -0.02 1.91 16 18 N -0.63 -12.89 2.94 -173.90 -0.51 -13.40 16 19 C 0.55 14.07 7.28 -12.99 -0.09 13.97 16 20 O -0.62 -16.96 11.86 5.20 0.06 -16.90 16 21 C -0.53 -14.46 9.34 -35.63 -0.33 -14.79 16 22 H 0.09 2.45 5.99 -52.49 -0.31 2.14 16 23 C 0.10 2.81 5.52 -17.36 -0.10 2.71 16 24 N -0.83 -22.91 13.92 55.55 0.77 -22.14 16 25 Si 0.97 24.68 25.88 -169.99 -4.40 20.28 16 26 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.32 -7.79 7.11 56.52 0.40 -7.39 16 28 H -0.27 -6.98 6.66 56.52 0.38 -6.61 16 29 C 0.10 1.68 6.61 -3.39 -0.02 1.66 16 30 C 0.09 1.15 6.47 -3.39 -0.02 1.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 1.37 5.88 -51.93 -0.31 1.06 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.09 1.54 6.99 -51.93 -0.36 1.18 16 46 H 0.11 2.14 5.33 -51.93 -0.28 1.86 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.28 7.23 8.29 -40.82 -0.34 6.89 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.10 1.71 7.01 -51.93 -0.36 1.34 16 51 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.08 0.69 5.63 -51.92 -0.29 0.40 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -36.99 405.90 -7.94 -44.93 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.10 Total: -1.25 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: 0.14 Total: 23.92 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.85 Total: -52.62 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.84 Total: -41.39 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.40 Total: 20.28 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.99 -7.94 -44.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408519559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.470 kcal (2) G-P(sol) polarization free energy of solvation -36.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds