Wall clock time and date at job start Tue Mar 31 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47160 * 2 1 4 4 C 1.52997 * 109.46980 * 239.99557 * 2 1 3 5 5 O 1.45206 * 109.46865 * 120.00231 * 2 1 3 6 6 C 1.34634 * 117.00222 * 59.99848 * 5 2 1 7 7 O 1.21507 * 120.00154 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99724 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49433 * 0.02562 * 8 6 5 10 10 C 1.53941 * 86.11719 * 204.63802 * 9 8 6 11 11 C 1.47578 * 134.48993 * 179.97438 * 8 6 5 12 12 H 1.08998 * 113.87131 * 269.67544 * 11 8 6 13 13 C 1.50700 * 113.76934 * 41.05949 * 11 8 6 14 14 O 1.21271 * 119.99800 * 356.49293 * 13 11 8 15 15 N 1.34779 * 119.99597 * 176.49139 * 13 11 8 16 16 C 1.46964 * 120.59023 * 179.97438 * 15 13 11 17 17 C 1.53375 * 108.63546 * 235.25145 * 16 15 13 18 18 N 1.46965 * 108.63206 * 310.57299 * 17 16 15 19 19 C 1.34769 * 120.59408 * 235.20143 * 18 17 16 20 20 O 1.21689 * 119.99939 * 184.91002 * 19 18 17 21 21 C 1.46374 * 120.00266 * 4.91314 * 19 18 17 22 22 H 1.07995 * 119.99695 * 345.18586 * 21 19 18 23 23 C 1.40045 * 119.99797 * 164.91130 * 21 19 18 24 24 N 1.30680 * 119.99799 * 171.32803 * 23 21 19 25 25 Si 1.86793 * 120.00505 * 351.32881 * 23 21 19 26 26 H 1.48501 * 109.47517 * 85.31862 * 25 23 21 27 27 H 1.48505 * 109.47436 * 205.32151 * 25 23 21 28 28 H 1.48506 * 109.47008 * 325.31968 * 25 23 21 29 29 C 1.46964 * 118.80804 * 55.48507 * 18 17 16 30 30 C 1.46959 * 120.59777 * 0.02604 * 15 13 11 31 31 H 1.08998 * 109.47389 * 300.00130 * 1 2 3 32 32 H 1.09002 * 109.47259 * 60.00219 * 1 2 3 33 33 H 1.09004 * 109.47277 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46534 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47066 * 299.99528 * 3 2 1 36 36 H 1.08993 * 109.47341 * 60.00079 * 3 2 1 37 37 H 1.09004 * 109.47472 * 300.00316 * 4 2 1 38 38 H 1.09000 * 109.47244 * 60.00473 * 4 2 1 39 39 H 1.09000 * 109.47282 * 180.02562 * 4 2 1 40 40 H 1.09003 * 113.77097 * 90.33299 * 9 8 6 41 41 H 1.09004 * 113.76856 * 318.94132 * 9 8 6 42 42 H 1.08997 * 113.74315 * 222.04503 * 10 9 8 43 43 H 1.09002 * 113.83801 * 90.74664 * 10 9 8 44 44 H 1.08997 * 109.60884 * 115.50687 * 16 15 13 45 45 H 1.09004 * 109.61272 * 354.99231 * 16 15 13 46 46 H 1.08998 * 109.60912 * 190.83309 * 17 16 15 47 47 H 1.09000 * 109.75089 * 70.40625 * 17 16 15 48 48 H 0.96998 * 120.00267 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.61723 * 64.25967 * 29 18 17 50 50 H 1.09005 * 109.61211 * 184.77584 * 29 18 17 51 51 H 1.09001 * 109.61297 * 244.49713 * 30 15 13 52 52 H 1.09007 * 109.60836 * 5.00399 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6846 1.1856 6 6 1.6521 -1.9724 1.3384 7 8 0.9508 -2.5095 0.5041 8 7 2.0680 -2.6658 2.4168 9 6 2.9008 -2.3477 3.5928 10 6 3.1945 -3.8572 3.6623 11 6 1.8725 -4.0478 2.8961 12 1 1.0039 -4.1716 3.5428 13 6 1.9462 -5.0851 1.8055 14 8 2.0869 -4.7420 0.6509 15 7 1.8558 -6.3941 2.1134 16 6 1.9256 -7.4167 1.0602 17 6 0.6749 -8.3000 1.1510 18 7 0.5044 -8.7303 2.5459 19 6 0.4130 -10.0393 2.8536 20 8 0.1827 -10.3805 3.9987 21 6 0.5909 -11.0505 1.8104 22 1 0.5560 -10.7645 0.7696 23 6 0.8120 -12.3879 2.1621 24 7 0.8018 -13.3157 1.2419 25 14 1.1214 -12.8457 3.9464 26 1 -0.1773 -13.0331 4.6418 27 1 1.9013 -14.1080 4.0056 28 1 1.8862 -11.7597 4.6105 29 6 0.4290 -7.7074 3.5984 30 6 1.6846 -6.8244 3.5081 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4423 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6765 -1.7490 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1299 -0.7218 -1.2490 40 1 2.3336 -1.9708 4.4439 41 1 3.7755 -1.7401 3.3604 42 1 3.1771 -4.2616 4.6743 43 1 4.0767 -4.1608 3.0985 44 1 2.8165 -8.0283 1.2025 45 1 1.9623 -6.9341 0.0835 46 1 0.7969 -9.1738 0.5110 47 1 -0.2002 -7.7331 0.8334 48 1 0.9553 -14.2420 1.4853 49 1 -0.4620 -7.0967 3.4520 50 1 0.3885 -8.1898 4.5751 51 1 2.5584 -7.3937 3.8252 52 1 1.5623 -5.9506 4.1481 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408519559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:00 Heat of formation + Delta-G solvation = -123.553319 kcal Electronic energy + Delta-G solvation = -35012.351655 eV Core-core repulsion = 30399.008957 eV Total energy + Delta-G solvation = -4613.342698 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 367.199 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.18424 -41.26048 -40.33082 -39.21495 -37.66363 -37.46495 -35.03108 -35.01069 -34.83814 -32.53782 -30.81909 -29.69839 -28.40089 -28.39404 -28.28298 -27.50153 -24.76419 -24.06314 -23.81573 -22.16808 -21.50859 -20.53134 -19.87016 -19.01007 -18.82961 -18.37811 -17.80067 -17.69164 -17.12939 -16.82314 -16.68645 -16.29677 -16.13026 -15.94176 -15.70015 -15.56018 -15.16348 -15.06212 -14.61133 -14.49504 -14.26678 -14.18641 -13.98275 -13.94013 -13.58964 -13.41430 -13.32291 -13.12090 -12.99143 -12.90127 -12.85842 -12.80487 -12.74109 -12.54702 -12.44653 -12.33350 -12.29595 -12.22938 -12.10182 -11.53604 -11.36632 -11.21089 -11.04693 -10.75052 -10.11345 -10.01538 -9.80691 -9.16389 -8.78363 -7.01251 0.87032 1.34303 1.39633 1.54057 1.61126 1.75066 1.97677 2.08836 2.33739 2.65303 2.78742 3.28004 3.29437 3.35641 3.74705 3.78146 3.85665 3.90193 3.92087 3.93406 4.07916 4.18278 4.23440 4.24961 4.41854 4.44722 4.53069 4.57042 4.57840 4.64930 4.67493 4.69604 4.72825 4.80109 4.85651 4.86353 4.88838 4.92248 5.01897 5.10704 5.13020 5.17005 5.26082 5.33619 5.40067 5.52285 5.66462 5.93140 6.19480 6.34351 6.60593 6.61439 7.06593 7.10929 7.39111 7.95058 8.27005 Molecular weight = 367.20amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.002120 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.486178 B =13207.462968 C =13869.368891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.126 3.874 3 C -0.131 4.131 4 C -0.178 4.178 5 O -0.367 6.367 6 C 0.659 3.341 7 O -0.577 6.577 8 N -0.632 5.632 9 C 0.113 3.887 10 C -0.121 4.121 11 C 0.130 3.870 12 H 0.149 0.851 13 C 0.501 3.499 14 O -0.556 6.556 15 N -0.605 5.605 16 C 0.110 3.890 17 C 0.112 3.888 18 N -0.632 5.632 19 C 0.555 3.445 20 O -0.639 6.639 21 C -0.554 4.554 22 H 0.081 0.919 23 C 0.067 3.933 24 N -0.851 5.851 25 Si 1.015 2.985 26 H -0.293 1.293 27 H -0.301 1.301 28 H -0.277 1.277 29 C 0.096 3.904 30 C 0.102 3.898 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.291 0.709 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.081 0.919 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.816 29.646 5.816 30.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.089 3.911 3 C -0.188 4.188 4 C -0.235 4.235 5 O -0.282 6.282 6 C 0.415 3.585 7 O -0.466 6.466 8 N -0.376 5.376 9 C -0.007 4.007 10 C -0.159 4.159 11 C 0.024 3.976 12 H 0.166 0.834 13 C 0.288 3.712 14 O -0.433 6.433 15 N -0.339 5.339 16 C -0.014 4.014 17 C -0.012 4.012 18 N -0.365 5.365 19 C 0.363 3.637 20 O -0.533 6.533 21 C -0.590 4.590 22 H 0.099 0.901 23 C -0.149 4.149 24 N -0.482 5.482 25 Si 0.846 3.154 26 H -0.220 1.220 27 H -0.231 1.231 28 H -0.204 1.204 29 C -0.027 4.027 30 C -0.021 4.021 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.113 0.887 42 H 0.165 0.835 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.110 0.890 51 H 0.100 0.900 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.498 29.561 5.129 30.698 hybrid contribution -0.434 -0.968 -0.328 1.110 sum 6.064 28.593 4.800 29.620 Atomic orbital electron populations 1.22437 0.94133 1.03186 1.03640 1.22374 0.94499 0.92811 0.81376 1.21851 1.02350 0.90134 1.04462 1.22441 1.01279 1.01898 0.97925 1.86269 1.72035 1.22834 1.47059 1.17836 0.78417 0.80404 0.81803 1.90951 1.41683 1.70419 1.43501 1.48767 1.55064 1.12442 1.21362 1.23519 0.94179 0.97134 0.85861 1.23653 0.93464 0.95909 1.02906 1.23178 1.03874 0.78696 0.91829 0.83383 1.21169 0.76231 0.83318 0.90449 1.90781 1.49512 1.80537 1.22440 1.48108 1.71934 1.04930 1.08906 1.21817 0.98044 0.89214 0.92340 1.21870 0.96854 0.98777 0.83748 1.47596 1.76440 1.05144 1.07322 1.18150 0.75657 0.82329 0.87549 1.90182 1.58816 1.79654 1.24615 1.21009 1.51792 0.91812 0.94430 0.90072 1.26326 0.89870 0.95622 1.03055 1.69577 1.38632 1.02768 1.37187 0.84549 0.77995 0.74557 0.78279 1.21983 1.23080 1.20363 1.22005 0.97972 0.89731 0.93006 1.22428 0.98080 1.00370 0.81176 0.91484 0.89225 0.92857 0.91258 0.88062 0.90710 0.93027 0.89199 0.92435 0.85791 0.88737 0.83532 0.89285 0.90833 0.89436 0.88938 0.92656 0.89826 0.91577 0.89030 0.90045 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 2 C 0.13 2.56 1.13 -10.80 -0.01 2.55 16 3 C -0.13 -1.59 8.85 71.98 0.64 -0.95 16 4 C -0.18 -4.07 8.37 71.98 0.60 -3.47 16 5 O -0.37 -9.00 9.87 -55.44 -0.55 -9.55 16 6 C 0.66 19.18 7.77 129.79 1.01 20.19 16 7 O -0.58 -21.30 10.47 26.79 0.28 -21.02 16 8 N -0.63 -13.68 3.41 -948.41 -3.23 -16.91 16 9 C 0.11 1.08 8.87 86.48 0.77 1.84 16 10 C -0.12 -1.07 7.49 31.26 0.23 -0.83 16 11 C 0.13 2.33 3.23 44.36 0.14 2.47 16 12 H 0.15 1.80 7.39 -2.39 -0.02 1.78 16 13 C 0.50 14.13 7.19 87.66 0.63 14.76 16 14 O -0.56 -21.51 13.67 17.84 0.24 -21.27 16 15 N -0.60 -16.27 2.95 -817.24 -2.41 -18.68 16 16 C 0.11 3.50 6.59 86.42 0.57 4.07 16 17 C 0.11 4.08 6.50 86.42 0.56 4.65 16 18 N -0.63 -25.51 2.94 -822.31 -2.42 -27.93 16 19 C 0.56 28.32 7.28 86.36 0.63 28.94 16 20 O -0.64 -35.04 11.86 -4.31 -0.05 -35.09 16 21 C -0.55 -30.72 9.34 24.83 0.23 -30.49 16 22 H 0.08 4.55 5.99 -2.91 -0.02 4.53 16 23 C 0.07 3.74 5.52 85.30 0.47 4.21 16 24 N -0.85 -47.78 13.92 21.84 0.30 -47.48 16 25 Si 1.01 50.94 25.88 68.60 1.78 52.71 16 26 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.28 -14.36 6.66 99.48 0.66 -13.70 16 29 C 0.10 2.91 6.61 86.55 0.57 3.48 16 30 C 0.10 2.18 6.47 86.55 0.56 2.74 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.49 5.88 -2.38 -0.01 1.47 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 1.64 5.88 -2.38 -0.01 1.63 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.09 0.81 8.14 -2.38 -0.02 0.80 16 42 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.09 2.95 6.99 -2.39 -0.02 2.94 16 46 H 0.09 3.74 5.33 -2.39 -0.01 3.72 16 47 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.29 14.95 8.29 -92.71 -0.77 14.18 16 49 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 50 H 0.09 2.97 7.01 -2.38 -0.02 2.95 16 51 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.14 1.48 5.63 -2.38 -0.01 1.47 16 Total: -1.00 -86.05 405.90 3.05 -83.01 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.89 Total: 11.00 kcal Atomic # 6 Polarization: 42.99 SS G_CDS: 8.21 Total: 51.20 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -7.76 Total: -111.00 kcal Atomic # 8 Polarization: -86.84 SS G_CDS: -0.07 Total: -86.92 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 1.78 Total: 52.71 kcal Total: -86.05 3.05 -83.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408519559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.548 kcal (2) G-P(sol) polarization free energy of solvation -86.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds