Wall clock time and date at job start Tue Mar 31 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47083 * 2 1 4 4 C 1.35894 * 117.00503 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05842 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94344 * 180.02562 * 5 4 3 7 7 C 1.38274 * 120.05818 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.94605 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47048 * 94.67436 * 8 7 6 10 10 O 1.21317 * 119.99946 * 5.11036 * 9 8 7 11 11 N 1.34780 * 120.00163 * 185.10710 * 9 8 7 12 12 N 1.40101 * 119.99998 * 185.02975 * 11 9 8 13 13 C 1.29843 * 119.99695 * 185.80324 * 12 11 9 14 14 C 1.47303 * 119.99992 * 9.04428 * 13 12 11 15 15 C 1.39682 * 120.20120 * 26.02098 * 14 13 12 16 16 C 1.37892 * 119.90492 * 180.29541 * 15 14 13 17 17 C 1.38523 * 120.31568 * 359.68116 * 16 15 14 18 18 C 1.38109 * 120.41243 * 0.02562 * 17 16 15 19 19 C 1.38727 * 120.07883 * 0.02562 * 18 17 16 20 20 O 1.35614 * 120.15517 * 180.02562 * 19 18 17 21 21 C 1.34797 * 117.00289 * 354.04463 * 20 19 18 22 22 H 1.08005 * 119.99885 * 5.14086 * 21 20 19 23 23 C 1.38648 * 120.00009 * 184.87030 * 21 20 19 24 24 N 1.31552 * 119.99705 * 355.21507 * 23 21 20 25 25 Si 1.86797 * 119.99723 * 175.22075 * 23 21 20 26 26 H 1.48495 * 109.47311 * 89.99658 * 25 23 21 27 27 H 1.48505 * 109.46844 * 209.99914 * 25 23 21 28 28 H 1.48503 * 109.47150 * 329.99391 * 25 23 21 29 29 C 1.38261 * 120.10572 * 0.25096 * 7 6 5 30 30 C 1.38147 * 120.05970 * 359.45473 * 29 7 6 31 31 H 1.08999 * 109.46729 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47632 * 300.00209 * 1 2 3 33 33 H 1.09007 * 109.46903 * 60.00806 * 1 2 3 34 34 H 1.08998 * 109.47574 * 239.99481 * 2 1 3 35 35 H 1.09007 * 109.46903 * 119.99194 * 2 1 3 36 36 H 1.07998 * 120.03034 * 0.02562 * 5 4 3 37 37 H 1.08001 * 119.97271 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47174 * 334.67916 * 8 7 6 39 39 H 1.09002 * 109.47308 * 214.67787 * 8 7 6 40 40 H 0.97001 * 119.99623 * 5.02320 * 11 9 8 41 41 H 1.07997 * 119.99821 * 189.04111 * 13 12 11 42 42 H 1.07996 * 120.04937 * 359.97438 * 15 14 13 43 43 H 1.07998 * 119.83892 * 179.70079 * 16 15 14 44 44 H 1.08004 * 119.79155 * 180.02562 * 17 16 15 45 45 H 1.07991 * 119.96339 * 180.02562 * 18 17 16 46 46 H 0.97001 * 119.99851 * 184.99948 * 24 23 21 47 47 H 1.08004 * 119.96642 * 179.70358 * 29 7 6 48 48 H 1.08001 * 120.03120 * 180.25049 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5255 0.0005 5 6 3.8850 2.8069 0.0000 6 6 5.2549 2.9853 0.0001 7 6 6.0962 1.8880 0.0000 8 6 7.5901 2.0855 -0.0005 9 6 8.1038 2.0369 1.4154 10 8 7.3485 1.7674 2.3257 11 7 9.4023 2.2927 1.6704 12 7 9.9032 2.1449 2.9705 13 6 11.1231 2.4983 3.2401 14 6 11.9149 3.2347 2.2398 15 6 11.2757 4.0167 1.2749 16 6 12.0225 4.6987 0.3376 17 6 13.4053 4.6176 0.3518 18 6 14.0511 3.8531 1.3036 19 6 13.3161 3.1592 2.2539 20 8 13.9487 2.4085 3.1895 21 6 15.2848 2.2778 3.0684 22 1 15.8139 2.8265 2.3032 23 6 15.9806 1.4433 3.9297 24 7 15.3527 0.8526 4.9234 25 14 17.8096 1.1580 3.6791 26 1 18.5782 2.1746 4.4414 27 1 18.1695 -0.1994 4.1620 28 1 18.1350 1.2720 2.2347 29 6 5.5689 0.6098 -0.0052 30 6 4.1998 0.4261 0.0009 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.2283 3.6643 -0.0004 37 1 5.6691 3.9827 0.0001 38 1 7.8284 3.0539 -0.4404 39 1 8.0609 1.2951 -0.5852 40 1 9.9900 2.5790 0.9538 41 1 11.5574 2.2522 4.1979 42 1 10.1978 4.0830 1.2598 43 1 11.5270 5.2991 -0.4109 44 1 13.9820 5.1556 -0.3861 45 1 15.1294 3.7954 1.3082 46 1 15.8516 0.3273 5.5684 47 1 6.2282 -0.2456 -0.0101 48 1 3.7884 -0.5725 0.0008 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408711900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:19 Heat of formation + Delta-G solvation = 5.615657 kcal Electronic energy + Delta-G solvation = -30955.031171 eV Core-core repulsion = 26556.879918 eV Total energy + Delta-G solvation = -4398.151253 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.46808 -39.80054 -39.13990 -37.78904 -37.00066 -35.69242 -32.95314 -32.59645 -32.12718 -31.34178 -31.02471 -29.91156 -29.02179 -27.03954 -25.60734 -24.33735 -23.44853 -22.39528 -21.90966 -21.66322 -20.55191 -19.99228 -18.50391 -18.24947 -17.38627 -17.12124 -16.39384 -16.32896 -16.17570 -15.56612 -15.14978 -14.84743 -14.76672 -14.53847 -14.25850 -14.11364 -14.00735 -13.74162 -13.72885 -13.59652 -13.49790 -13.06640 -12.90416 -12.67439 -12.36011 -12.12238 -12.00132 -11.89126 -11.78181 -11.72409 -11.46425 -11.31664 -11.06731 -10.99386 -10.97810 -10.93121 -10.59963 -10.06587 -9.73126 -9.46228 -9.12419 -9.06957 -8.94034 -8.25069 -8.05665 -7.37545 -6.66516 -4.25877 1.20528 1.24973 1.35943 2.03563 2.54174 2.91231 2.94716 3.00443 3.03088 3.07601 3.25673 3.66432 3.77893 4.32280 4.51382 4.54270 4.54996 4.69198 4.72006 4.82306 4.86938 4.91801 4.93262 5.03402 5.11827 5.18398 5.21244 5.30994 5.32795 5.39753 5.44295 5.49918 5.55850 5.64556 5.67322 5.79897 5.87652 5.91466 6.08507 6.19352 6.35396 6.43183 6.45841 6.51752 6.59415 6.84072 6.93072 7.06319 7.12020 7.20863 7.44632 7.48719 7.74210 7.90456 8.75306 8.76887 9.39524 10.48761 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.001566 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.813830 B =17870.224075 C =18791.759137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.128 3.872 5 C -0.151 4.151 6 C -0.067 4.067 7 C -0.101 4.101 8 C -0.095 4.095 9 C 0.522 3.478 10 O -0.508 6.508 11 N -0.592 5.592 12 N -0.266 5.266 13 C 0.162 3.838 14 C -0.196 4.196 15 C -0.081 4.081 16 C -0.213 4.213 17 C -0.057 4.057 18 C -0.228 4.228 19 C 0.179 3.821 20 O -0.159 6.159 21 C -0.398 4.398 22 H 0.096 0.904 23 C 0.045 3.955 24 N -0.849 5.849 25 Si 0.943 3.057 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.266 1.266 29 C -0.058 4.058 30 C -0.207 4.207 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.392 0.608 41 H 0.185 0.815 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.275 0.725 47 H 0.124 0.876 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.990 1.493 -13.530 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.233 6.233 4 C 0.083 3.917 5 C -0.170 4.170 6 C -0.085 4.085 7 C -0.101 4.101 8 C -0.136 4.136 9 C 0.308 3.692 10 O -0.381 6.381 11 N -0.340 5.340 12 N -0.070 5.070 13 C -0.047 4.047 14 C -0.201 4.201 15 C -0.101 4.101 16 C -0.232 4.232 17 C -0.076 4.076 18 C -0.247 4.247 19 C 0.121 3.879 20 O -0.060 6.060 21 C -0.473 4.473 22 H 0.113 0.887 23 C -0.162 4.162 24 N -0.482 5.482 25 Si 0.767 3.233 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.190 1.190 29 C -0.077 4.077 30 C -0.225 4.225 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.237 0.763 41 H 0.201 0.799 42 H 0.141 0.859 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.150 0.850 46 H 0.085 0.915 47 H 0.142 0.858 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.651 0.635 -12.197 23.137 hybrid contribution 2.222 0.248 -0.818 2.380 sum -17.429 0.883 -13.015 21.771 Atomic orbital electron populations 1.21774 0.92773 1.02842 1.03501 1.22779 0.95820 0.82072 1.01484 1.86049 1.19212 1.29248 1.88743 1.18976 0.82088 0.94220 0.96464 1.20339 0.95033 0.94769 1.06867 1.20811 0.92173 0.98521 0.96993 1.19132 0.93505 0.93503 1.04009 1.20605 0.93387 1.05315 0.94304 1.20468 0.80679 0.77091 0.90961 1.90714 1.55532 1.45258 1.46592 1.47685 1.10892 1.68051 1.07387 1.75370 1.13314 1.19588 0.98760 1.25308 0.88475 0.91455 0.99418 1.18609 0.91113 1.07921 1.02422 1.21160 0.98855 0.96067 0.94052 1.20539 0.94011 1.06189 1.02462 1.20933 0.94255 0.95878 0.96531 1.21206 1.00937 1.03606 0.98985 1.19358 0.90634 0.89997 0.87947 1.83884 1.22863 1.57862 1.41362 1.21397 0.79056 1.27503 1.19388 0.88653 1.25346 1.00776 0.94819 0.95235 1.70001 1.36679 1.29434 1.12063 0.85672 0.79990 0.78442 0.79195 1.19678 1.20036 1.18998 1.20771 0.94317 0.96661 0.95910 1.21163 0.94196 0.97961 1.09216 0.90386 0.91485 0.91570 0.92060 0.91947 0.85250 0.85358 0.87958 0.87581 0.76296 0.79869 0.85931 0.86993 0.86961 0.84957 0.91504 0.85812 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.32 -3.41 10.14 -19.41 -0.20 -3.61 16 4 C 0.13 1.47 6.69 -39.22 -0.26 1.21 16 5 C -0.15 -1.69 9.99 -39.43 -0.39 -2.08 16 6 C -0.07 -0.74 9.67 -39.60 -0.38 -1.12 16 7 C -0.10 -1.18 4.38 -104.60 -0.46 -1.64 16 8 C -0.09 -1.01 5.83 -29.04 -0.17 -1.18 16 9 C 0.52 8.23 7.93 -10.98 -0.09 8.15 16 10 O -0.51 -10.19 16.38 5.53 0.09 -10.10 16 11 N -0.59 -9.74 4.78 31.22 0.15 -9.59 16 12 N -0.27 -5.23 11.12 32.13 0.36 -4.87 16 13 C 0.16 3.16 10.86 -14.71 -0.16 3.00 16 14 C -0.20 -3.76 5.61 -104.88 -0.59 -4.35 16 15 C -0.08 -1.30 7.66 -39.17 -0.30 -1.60 16 16 C -0.21 -3.15 10.03 -39.60 -0.40 -3.54 16 17 C -0.06 -0.90 10.03 -39.52 -0.40 -1.29 16 18 C -0.23 -4.35 9.16 -39.45 -0.36 -4.71 16 19 C 0.18 3.85 6.66 -38.61 -0.26 3.59 16 20 O -0.16 -4.05 9.11 0.56 0.01 -4.04 16 21 C -0.40 -10.06 9.48 30.88 0.29 -9.76 16 22 H 0.10 2.21 5.21 -52.48 -0.27 1.93 16 23 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 24 N -0.85 -23.00 13.67 55.48 0.76 -22.24 16 25 Si 0.94 18.93 29.56 -169.99 -5.02 13.90 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 28 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 29 C -0.06 -0.67 9.70 -39.61 -0.38 -1.06 16 30 C -0.21 -2.26 9.04 -39.43 -0.36 -2.62 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 35 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 40 H 0.39 5.66 4.97 -182.60 -0.91 4.76 16 41 H 0.18 3.61 7.90 -52.49 -0.41 3.20 16 42 H 0.12 1.78 5.67 -52.49 -0.30 1.48 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.13 2.50 5.64 -52.49 -0.30 2.21 16 46 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 47 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 48 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 LS Contribution 410.23 15.07 6.18 6.18 Total: -1.00 -32.54 410.23 -8.52 -41.07 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.67 Total: 11.12 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -4.17 Total: -17.83 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 1.27 Total: -36.70 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.10 Total: -17.75 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.54 -8.52 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408711900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.684 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds