Wall clock time and date at job start Tue Mar 31 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47083 * 2 1 4 4 C 1.35894 * 117.00503 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05842 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94344 * 180.02562 * 5 4 3 7 7 C 1.38274 * 120.05818 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.94605 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47048 * 94.67436 * 8 7 6 10 10 O 1.21317 * 119.99946 * 5.11036 * 9 8 7 11 11 N 1.34780 * 120.00163 * 185.10710 * 9 8 7 12 12 N 1.40101 * 119.99998 * 185.02975 * 11 9 8 13 13 C 1.29843 * 119.99695 * 185.80324 * 12 11 9 14 14 C 1.47303 * 119.99992 * 9.04428 * 13 12 11 15 15 C 1.39682 * 120.20120 * 26.02098 * 14 13 12 16 16 C 1.37892 * 119.90492 * 180.29541 * 15 14 13 17 17 C 1.38523 * 120.31568 * 359.68116 * 16 15 14 18 18 C 1.38109 * 120.41243 * 0.02562 * 17 16 15 19 19 C 1.38727 * 120.07883 * 0.02562 * 18 17 16 20 20 O 1.35614 * 120.15517 * 180.02562 * 19 18 17 21 21 C 1.34797 * 117.00289 * 354.04463 * 20 19 18 22 22 H 1.08005 * 119.99885 * 5.14086 * 21 20 19 23 23 C 1.38648 * 120.00009 * 184.87030 * 21 20 19 24 24 N 1.31552 * 119.99705 * 355.21507 * 23 21 20 25 25 Si 1.86797 * 119.99723 * 175.22075 * 23 21 20 26 26 H 1.48495 * 109.47311 * 89.99658 * 25 23 21 27 27 H 1.48505 * 109.46844 * 209.99914 * 25 23 21 28 28 H 1.48503 * 109.47150 * 329.99391 * 25 23 21 29 29 C 1.38261 * 120.10572 * 0.25096 * 7 6 5 30 30 C 1.38147 * 120.05970 * 359.45473 * 29 7 6 31 31 H 1.08999 * 109.46729 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47632 * 300.00209 * 1 2 3 33 33 H 1.09007 * 109.46903 * 60.00806 * 1 2 3 34 34 H 1.08998 * 109.47574 * 239.99481 * 2 1 3 35 35 H 1.09007 * 109.46903 * 119.99194 * 2 1 3 36 36 H 1.07998 * 120.03034 * 0.02562 * 5 4 3 37 37 H 1.08001 * 119.97271 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47174 * 334.67916 * 8 7 6 39 39 H 1.09002 * 109.47308 * 214.67787 * 8 7 6 40 40 H 0.97001 * 119.99623 * 5.02320 * 11 9 8 41 41 H 1.07997 * 119.99821 * 189.04111 * 13 12 11 42 42 H 1.07996 * 120.04937 * 359.97438 * 15 14 13 43 43 H 1.07998 * 119.83892 * 179.70079 * 16 15 14 44 44 H 1.08004 * 119.79155 * 180.02562 * 17 16 15 45 45 H 1.07991 * 119.96339 * 180.02562 * 18 17 16 46 46 H 0.97001 * 119.99851 * 184.99948 * 24 23 21 47 47 H 1.08004 * 119.96642 * 179.70358 * 29 7 6 48 48 H 1.08001 * 120.03120 * 180.25049 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5255 0.0005 5 6 3.8850 2.8069 0.0000 6 6 5.2549 2.9853 0.0001 7 6 6.0962 1.8880 0.0000 8 6 7.5901 2.0855 -0.0005 9 6 8.1038 2.0369 1.4154 10 8 7.3485 1.7674 2.3257 11 7 9.4023 2.2927 1.6704 12 7 9.9032 2.1449 2.9705 13 6 11.1231 2.4983 3.2401 14 6 11.9149 3.2347 2.2398 15 6 11.2757 4.0167 1.2749 16 6 12.0225 4.6987 0.3376 17 6 13.4053 4.6176 0.3518 18 6 14.0511 3.8531 1.3036 19 6 13.3161 3.1592 2.2539 20 8 13.9487 2.4085 3.1895 21 6 15.2848 2.2778 3.0684 22 1 15.8139 2.8265 2.3032 23 6 15.9806 1.4433 3.9297 24 7 15.3527 0.8526 4.9234 25 14 17.8096 1.1580 3.6791 26 1 18.5782 2.1746 4.4414 27 1 18.1695 -0.1994 4.1620 28 1 18.1350 1.2720 2.2347 29 6 5.5689 0.6098 -0.0052 30 6 4.1998 0.4261 0.0009 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.2283 3.6643 -0.0004 37 1 5.6691 3.9827 0.0001 38 1 7.8284 3.0539 -0.4404 39 1 8.0609 1.2951 -0.5852 40 1 9.9900 2.5790 0.9538 41 1 11.5574 2.2522 4.1979 42 1 10.1978 4.0830 1.2598 43 1 11.5270 5.2991 -0.4109 44 1 13.9820 5.1556 -0.3861 45 1 15.1294 3.7954 1.3082 46 1 15.8516 0.3273 5.5684 47 1 6.2282 -0.2456 -0.0101 48 1 3.7884 -0.5725 0.0008 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408711900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:17 Heat of formation + Delta-G solvation = -13.312714 kcal Electronic energy + Delta-G solvation = -30955.851966 eV Core-core repulsion = 26556.879918 eV Total energy + Delta-G solvation = -4398.972049 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.43814 -41.08672 -40.44485 -38.86574 -38.32790 -37.13269 -34.36939 -33.92287 -33.24425 -32.20491 -31.78403 -31.29340 -30.47459 -27.96916 -27.38421 -25.04486 -24.75370 -23.39234 -23.27167 -22.61539 -21.70884 -21.35748 -19.89294 -19.25862 -18.93467 -18.38553 -17.63235 -17.12922 -17.04663 -16.55427 -16.52899 -16.30840 -16.08367 -15.70797 -15.60617 -15.44263 -15.27757 -15.09509 -14.53233 -14.49131 -14.40224 -14.22912 -14.19061 -13.64809 -13.49559 -13.39738 -13.04153 -12.87264 -12.84246 -12.75169 -12.56472 -12.52606 -12.49832 -12.34509 -12.12754 -11.68415 -11.68202 -11.64493 -11.07523 -10.96815 -10.81760 -10.36568 -9.94326 -9.48154 -9.08265 -8.90073 -8.47782 -6.15667 -0.08001 0.36474 0.40998 0.61542 1.17512 1.37990 1.46326 1.54653 1.67172 1.93192 2.15815 2.25788 2.77532 2.82644 3.14005 3.34460 3.63249 3.72500 3.80428 3.89890 3.95719 3.98849 4.03287 4.11190 4.18781 4.30202 4.33534 4.34583 4.40250 4.41784 4.51201 4.57304 4.63283 4.72317 4.89453 4.89888 4.92366 4.98036 5.07836 5.10582 5.17653 5.18700 5.28849 5.38403 5.53636 5.58116 5.62333 5.67586 5.81459 5.96271 6.10475 6.19217 6.45015 6.54711 6.95820 7.42749 7.70847 8.72544 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.001566 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.813830 B =17870.224075 C =18791.759137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.115 3.885 5 C -0.165 4.165 6 C -0.071 4.071 7 C -0.117 4.117 8 C -0.083 4.083 9 C 0.520 3.480 10 O -0.557 6.557 11 N -0.586 5.586 12 N -0.287 5.287 13 C 0.155 3.845 14 C -0.202 4.202 15 C -0.081 4.081 16 C -0.181 4.181 17 C -0.049 4.049 18 C -0.241 4.241 19 C 0.148 3.852 20 O -0.212 6.212 21 C -0.415 4.415 22 H 0.108 0.892 23 C -0.016 4.016 24 N -0.911 5.911 25 Si 1.014 2.986 26 H -0.263 1.263 27 H -0.277 1.277 28 H -0.251 1.251 29 C -0.073 4.073 30 C -0.215 4.215 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.404 0.596 41 H 0.165 0.835 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.154 0.846 45 H 0.127 0.873 46 H 0.273 0.727 47 H 0.131 0.869 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.658 3.389 -17.475 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.247 6.247 4 C 0.070 3.930 5 C -0.184 4.184 6 C -0.089 4.089 7 C -0.118 4.118 8 C -0.123 4.123 9 C 0.309 3.691 10 O -0.432 6.432 11 N -0.336 5.336 12 N -0.091 5.091 13 C -0.054 4.054 14 C -0.206 4.206 15 C -0.101 4.101 16 C -0.199 4.199 17 C -0.068 4.068 18 C -0.260 4.260 19 C 0.093 3.907 20 O -0.116 6.116 21 C -0.490 4.490 22 H 0.126 0.874 23 C -0.215 4.215 24 N -0.547 5.547 25 Si 0.834 3.166 26 H -0.188 1.188 27 H -0.202 1.202 28 H -0.174 1.174 29 C -0.091 4.091 30 C -0.234 4.234 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.251 0.749 41 H 0.182 0.818 42 H 0.162 0.838 43 H 0.180 0.820 44 H 0.172 0.828 45 H 0.145 0.855 46 H 0.083 0.917 47 H 0.149 0.851 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.343 2.576 -16.212 26.140 hybrid contribution 2.062 -0.169 0.177 2.076 sum -18.281 2.407 -16.035 24.436 Atomic orbital electron populations 1.21801 0.91332 1.04169 1.03236 1.23046 0.97008 0.80904 1.02057 1.86039 1.18869 1.31149 1.88664 1.19214 0.82602 0.94666 0.96508 1.20622 0.95623 0.95194 1.06962 1.21111 0.92094 0.99445 0.96262 1.19341 0.94201 0.93708 1.04554 1.20694 0.92595 1.08409 0.90639 1.21556 0.79658 0.75210 0.92660 1.90700 1.56557 1.47307 1.48658 1.47733 1.11500 1.68024 1.06310 1.75294 1.13228 1.19339 1.01268 1.25083 0.88743 0.92192 0.99347 1.18868 0.90407 1.08336 1.03036 1.21449 1.00076 0.95276 0.93316 1.21158 0.93582 1.03677 1.01518 1.21415 0.95189 0.94385 0.95767 1.21383 1.00932 1.04204 0.99504 1.19892 0.91761 0.90401 0.88596 1.83875 1.22985 1.60744 1.43959 1.21856 0.79698 1.27730 1.19756 0.87449 1.26516 1.05628 0.94499 0.94830 1.70151 1.38595 1.32055 1.13943 0.84628 0.74040 0.78129 0.79789 1.18788 1.20205 1.17416 1.21023 0.94785 0.97238 0.96084 1.21382 0.94184 0.98752 1.09052 0.88260 0.92048 0.91505 0.90923 0.91897 0.84178 0.83241 0.84144 0.85026 0.74927 0.81763 0.83841 0.81975 0.82825 0.85512 0.91742 0.85143 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.33 -6.93 10.14 -92.36 -0.94 -7.87 16 4 C 0.12 2.57 6.69 22.51 0.15 2.72 16 5 C -0.17 -3.49 9.99 22.36 0.22 -3.27 16 6 C -0.07 -1.42 9.67 22.26 0.22 -1.20 16 7 C -0.12 -2.49 4.38 -19.85 -0.09 -2.57 16 8 C -0.08 -1.48 5.83 29.10 0.17 -1.31 16 9 C 0.52 15.46 7.93 87.66 0.70 16.16 16 10 O -0.56 -22.15 16.38 -3.14 -0.05 -22.20 16 11 N -0.59 -18.31 4.78 -173.50 -0.83 -19.14 16 12 N -0.29 -11.42 11.12 -52.26 -0.58 -12.00 16 13 C 0.16 6.31 10.86 87.37 0.95 7.26 16 14 C -0.20 -7.70 5.61 -20.03 -0.11 -7.81 16 15 C -0.08 -2.32 7.66 22.54 0.17 -2.15 16 16 C -0.18 -4.28 10.03 22.26 0.22 -4.06 16 17 C -0.05 -1.31 10.03 22.31 0.22 -1.09 16 18 C -0.24 -8.88 9.16 22.36 0.20 -8.67 16 19 C 0.15 6.49 6.66 22.90 0.15 6.64 16 20 O -0.21 -11.43 9.11 -20.91 -0.19 -11.62 16 21 C -0.41 -21.99 9.48 67.92 0.64 -21.34 16 22 H 0.11 5.12 5.21 -2.91 -0.02 5.11 16 23 C -0.02 -0.82 5.49 84.83 0.47 -0.35 16 24 N -0.91 -52.78 13.67 21.61 0.30 -52.49 16 25 Si 1.01 40.03 29.56 68.60 2.03 42.06 16 26 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 27 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 28 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 29 C -0.07 -1.60 9.70 22.25 0.22 -1.39 16 30 C -0.22 -4.53 9.04 22.37 0.20 -4.33 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 35 H 0.06 0.86 7.66 -2.38 -0.02 0.84 16 36 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.14 1.45 8.05 -2.39 -0.02 1.43 16 39 H 0.13 1.73 8.11 -2.39 -0.02 1.71 16 40 H 0.40 10.46 4.97 -213.32 -1.06 9.40 16 41 H 0.17 7.18 7.90 -2.91 -0.02 7.15 16 42 H 0.14 3.55 5.67 -2.91 -0.02 3.53 16 43 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 44 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 45 H 0.13 4.74 5.64 -2.92 -0.02 4.72 16 46 H 0.27 14.66 8.32 -92.71 -0.77 13.89 16 47 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 48 H 0.14 2.36 6.30 -2.91 -0.02 2.34 16 Total: -1.00 -77.69 410.23 5.53 -72.17 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -0.05 Total: 37.55 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 5.84 Total: -26.46 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.11 Total: -83.63 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.18 Total: -41.69 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -77.69 5.53 -72.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408711900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.855 kcal (2) G-P(sol) polarization free energy of solvation -77.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds