Wall clock time and date at job start Tue Mar 31 2020 07:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35947 * 117.00255 * 2 1 4 4 C 1.38081 * 119.98787 * 359.72924 * 3 2 1 5 5 C 1.40054 * 119.85265 * 179.79189 * 4 3 2 6 6 C 1.46771 * 120.07991 * 180.22519 * 5 4 3 7 7 C 1.35793 * 119.99838 * 21.48367 * 6 5 4 8 8 S 1.77481 * 127.96910 * 7.55398 * 7 6 5 9 9 C 1.77228 * 94.57007 * 179.97438 * 8 7 6 10 10 O 1.21638 * 126.54915 * 180.02562 * 9 8 7 11 11 N 1.33788 * 106.89551 * 0.02562 * 9 8 7 12 12 C 1.46495 * 120.24442 * 180.02562 * 11 9 8 13 13 C 1.32259 * 119.51338 * 359.70352 * 11 9 8 14 14 O 1.21709 * 122.52383 * 180.30591 * 13 11 9 15 15 C 1.40110 * 119.83666 * 0.50120 * 5 4 3 16 16 C 1.37725 * 119.97988 * 359.73317 * 15 5 4 17 17 Cl 1.73602 * 119.92804 * 180.02562 * 16 15 5 18 18 C 1.39182 * 120.14466 * 0.02562 * 16 15 5 19 19 O 1.35633 * 119.91789 * 179.97438 * 18 16 15 20 20 C 1.34747 * 117.00017 * 270.02447 * 19 18 16 21 21 H 1.07999 * 120.00120 * 0.02562 * 20 19 18 22 22 C 1.38689 * 119.99826 * 179.97438 * 20 19 18 23 23 N 1.31531 * 120.00105 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99865 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47093 * 60.00485 * 24 22 20 26 26 H 1.48502 * 109.47139 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47484 * 300.00167 * 24 22 20 28 28 H 1.09003 * 109.47205 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46794 * 299.99829 * 1 2 3 30 30 H 1.08998 * 109.47440 * 59.99223 * 1 2 3 31 31 H 1.08004 * 120.06860 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.00281 * 201.47400 * 6 5 4 33 33 H 1.09002 * 109.47196 * 359.97293 * 12 11 9 34 34 H 1.09000 * 109.47180 * 119.97508 * 12 11 9 35 35 H 1.09001 * 109.47170 * 239.97856 * 12 11 9 36 36 H 1.08000 * 120.01061 * 179.70313 * 15 5 4 37 37 H 0.96996 * 120.00303 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2940 2.3692 -0.0057 5 6 1.9328 3.6155 -0.0012 6 6 1.1381 4.8495 -0.0022 7 6 -0.1511 4.8271 0.4236 8 16 -1.0249 3.4855 1.1896 9 6 -2.5430 4.3842 1.3590 10 8 -3.5791 3.9710 1.8442 11 7 -2.3317 5.6037 0.8511 12 6 -3.4086 6.5968 0.8438 13 6 -1.1414 5.9083 0.3615 14 8 -0.8874 7.0020 -0.1084 15 6 3.3324 3.6815 -0.0017 16 6 4.0760 2.5223 -0.0010 17 17 5.8100 2.6057 -0.0009 18 6 3.4403 1.2841 -0.0003 19 8 4.1772 0.1454 -0.0001 20 6 4.5096 -0.3684 -1.2006 21 1 4.1904 0.1255 -2.1065 22 6 5.2625 -1.5308 -1.2730 23 7 5.6516 -2.1321 -0.1697 24 14 5.7238 -2.2427 -2.9372 25 1 6.5249 -1.2487 -3.6958 26 1 6.5246 -3.4781 -2.7424 27 1 4.4894 -2.5669 -3.6964 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2154 2.3138 -0.0105 32 1 1.5787 5.7753 -0.3414 33 1 -4.3043 6.1647 1.2901 34 1 -3.1013 7.4703 1.4188 35 1 -3.6217 6.8942 -0.1830 36 1 3.8279 4.6412 -0.0032 37 1 6.1778 -2.9453 -0.2203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408809031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:21 Heat of formation + Delta-G solvation = -59.177889 kcal Electronic energy + Delta-G solvation = -27925.090433 eV Core-core repulsion = 23595.064691 eV Total energy + Delta-G solvation = -4330.025742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 369.032 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.86431 -40.17440 -39.11718 -37.65572 -36.95292 -36.15558 -35.90924 -33.71528 -31.94884 -30.23985 -29.99214 -28.24484 -27.11361 -25.49532 -24.82271 -23.55688 -22.31036 -21.60738 -19.99140 -19.21575 -18.34078 -17.61269 -17.49858 -17.33147 -16.59202 -16.27884 -15.95743 -15.60019 -15.39600 -15.02939 -14.88165 -14.56605 -14.31652 -13.95300 -13.83444 -13.65454 -13.54063 -13.02284 -12.82406 -12.47510 -12.21735 -12.03542 -11.73497 -11.53464 -11.37225 -11.30496 -11.15487 -11.02074 -10.58056 -10.50289 -10.43678 -10.33326 -10.23814 -10.13662 -9.78159 -8.69103 -8.31012 -8.28203 -7.60001 -6.11560 -3.82421 -0.18011 0.42977 1.08796 1.20664 1.41310 1.85058 2.23869 2.50904 2.53702 3.24799 3.26208 3.29223 3.60215 3.64707 3.69329 4.21746 4.47440 4.66638 4.76045 4.83362 4.84095 4.98221 5.02506 5.11279 5.18020 5.23169 5.32386 5.34119 5.35098 5.57767 5.67964 5.97397 6.17436 6.23701 6.25207 6.38856 6.49700 6.65005 7.07084 7.31093 7.64452 8.22456 9.29632 9.88499 11.06852 Molecular weight = 369.03amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.002785 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.755954 B =10050.106481 C =11171.602082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.108 3.892 4 C -0.173 4.173 5 C -0.098 4.098 6 C 0.107 3.893 7 C -0.260 4.260 8 S 0.001 5.999 9 C 0.512 3.488 10 O -0.441 6.441 11 N -0.574 5.574 12 C 0.067 3.933 13 C 0.565 3.435 14 O -0.475 6.475 15 C -0.089 4.089 16 C -0.045 4.045 17 Cl -0.038 7.038 18 C 0.163 3.837 19 O -0.212 6.212 20 C -0.364 4.364 21 H 0.069 0.931 22 C 0.038 3.962 23 N -0.877 5.877 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.281 1.281 27 H -0.275 1.275 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.259 14.881 0.681 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.192 6.192 3 C 0.061 3.939 4 C -0.194 4.194 5 C -0.099 4.099 6 C 0.080 3.920 7 C -0.375 4.375 8 S 0.239 5.761 9 C 0.194 3.806 10 O -0.314 6.314 11 N -0.319 5.319 12 C -0.077 4.077 13 C 0.355 3.645 14 O -0.349 6.349 15 C -0.109 4.109 16 C -0.073 4.073 17 Cl -0.009 7.009 18 C 0.114 3.886 19 O -0.123 6.123 20 C -0.440 4.440 21 H 0.087 0.913 22 C -0.163 4.163 23 N -0.516 5.516 24 Si 0.756 3.244 25 H -0.200 1.200 26 H -0.206 1.206 27 H -0.201 1.201 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.158 0.842 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.074 13.551 1.298 18.875 hybrid contribution -0.422 1.124 -1.210 1.705 sum -13.496 14.676 0.088 19.938 Atomic orbital electron populations 1.23148 0.79370 1.04097 1.00843 1.86389 1.20079 1.24879 1.87805 1.19445 0.91786 0.84705 0.97946 1.21553 0.99870 0.91406 1.06616 1.18253 0.92492 0.91185 1.08008 1.21970 0.88506 0.97464 0.84022 1.23459 0.99305 0.97061 1.17671 1.86790 1.04404 1.15681 1.69230 1.22988 0.94463 0.83924 0.79245 1.90906 1.28253 1.69858 1.42416 1.46216 1.14541 1.15452 1.55703 1.22062 0.89565 0.91573 1.04494 1.17433 0.81523 0.88038 0.77524 1.90898 1.79657 1.22661 1.41708 1.20958 0.91691 0.97557 1.00650 1.21155 0.86599 0.93442 1.06102 1.98373 1.07450 1.98419 1.96644 1.18570 0.87389 0.88818 0.93837 1.83861 1.66500 1.32610 1.29366 1.20727 1.34137 1.08338 0.80797 0.91283 1.24959 0.97154 0.95912 0.98263 1.69996 1.36673 1.18735 1.26242 0.85978 0.78639 0.78583 0.81248 1.19995 1.20629 1.20052 0.88011 0.92877 0.92948 0.83989 0.82045 0.88460 0.89943 0.89950 0.84209 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.28 -5.45 10.27 -34.21 -0.35 -5.80 16 3 C 0.11 2.06 6.70 -39.13 -0.26 1.79 16 4 C -0.17 -2.58 7.59 -38.96 -0.30 -2.87 16 5 C -0.10 -1.29 5.80 -105.07 -0.61 -1.90 16 6 C 0.11 1.10 9.82 -37.01 -0.36 0.73 16 7 C -0.26 -2.84 6.33 -37.02 -0.23 -3.07 16 8 S 0.00 0.01 19.05 -107.50 -2.05 -2.04 16 9 C 0.51 5.82 8.41 53.61 0.45 6.27 16 10 O -0.44 -5.78 17.12 5.24 0.09 -5.69 16 11 N -0.57 -5.89 2.88 -128.52 -0.37 -6.26 16 12 C 0.07 0.49 10.18 59.84 0.61 1.10 16 13 C 0.57 6.33 7.62 -13.93 -0.11 6.22 16 14 O -0.47 -6.07 17.23 5.18 0.09 -5.98 16 15 C -0.09 -1.24 9.56 -39.07 -0.37 -1.62 16 16 C -0.05 -0.83 6.32 -39.42 -0.25 -1.08 16 17 Cl -0.04 -0.71 28.49 -51.86 -1.48 -2.19 16 18 C 0.16 3.53 5.61 -38.72 -0.22 3.31 16 19 O -0.21 -5.70 8.89 -13.99 -0.12 -5.82 16 20 C -0.36 -9.97 9.82 30.90 0.30 -9.67 16 21 H 0.07 1.81 7.76 -52.49 -0.41 1.41 16 22 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 23 N -0.88 -26.03 13.67 55.48 0.76 -25.27 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 30 H 0.05 0.61 7.64 -51.93 -0.40 0.21 16 31 H 0.14 1.85 2.89 -29.33 -0.08 1.77 16 32 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.10 0.65 7.24 -51.93 -0.38 0.27 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -33.22 359.56 -6.40 -39.62 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -2.91 Total: -3.53 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.45 Total: 1.45 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.39 Total: -31.53 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.30 Total: -23.30 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.05 Total: -2.04 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.22 -6.40 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408809031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.553 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds