Wall clock time and date at job start Tue Mar 31 2020 05:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.61218 * 2 1 4 4 C 1.53370 * 109.75176 * 239.57109 * 2 1 3 5 5 N 1.46963 * 108.63859 * 190.74860 * 4 2 1 6 6 C 1.34772 * 120.59475 * 235.20421 * 5 4 2 7 7 O 1.21589 * 119.99980 * 6.00641 * 6 5 4 8 8 N 1.34776 * 120.00226 * 186.00206 * 6 5 4 9 9 C 1.46503 * 120.00391 * 185.41141 * 8 6 5 10 10 C 1.52996 * 109.47239 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47033 * 180.02562 * 10 9 8 12 12 O 1.42908 * 109.47431 * 180.02562 * 11 10 9 13 13 C 1.42892 * 114.00498 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47193 * 179.97438 * 13 12 11 15 15 F 1.39897 * 109.47016 * 60.00121 * 14 13 12 16 16 F 1.39901 * 109.46883 * 180.02562 * 14 13 12 17 17 F 1.39895 * 109.47283 * 300.00042 * 14 13 12 18 18 C 1.46965 * 118.81355 * 55.22551 * 5 4 2 19 19 C 1.53822 * 108.57559 * 304.65113 * 18 5 4 20 20 H 1.08997 * 109.75441 * 289.94050 * 19 18 5 21 21 C 1.53004 * 109.69414 * 169.28910 * 19 18 5 22 22 N 1.46958 * 108.39904 * 49.63544 * 19 18 5 23 23 C 1.36935 * 120.59308 * 124.75906 * 22 19 18 24 24 H 1.08008 * 120.00050 * 306.82460 * 23 22 19 25 25 C 1.38811 * 120.00243 * 126.82542 * 23 22 19 26 26 N 1.31623 * 119.99812 * 336.89105 * 25 23 22 27 27 Si 1.86799 * 120.00331 * 156.89040 * 25 23 22 28 28 H 1.48503 * 109.47280 * 179.97438 * 27 25 23 29 29 H 1.48495 * 109.47099 * 300.00080 * 27 25 23 30 30 H 1.48507 * 109.46806 * 59.99982 * 27 25 23 31 31 H 1.09004 * 109.47371 * 307.42125 * 1 2 3 32 32 H 1.08994 * 109.47141 * 67.42073 * 1 2 3 33 33 H 1.08999 * 109.47104 * 187.42094 * 1 2 3 34 34 H 1.09001 * 109.60975 * 310.49163 * 4 2 1 35 35 H 1.08996 * 109.61199 * 70.83243 * 4 2 1 36 36 H 0.97004 * 120.00039 * 5.40688 * 8 6 5 37 37 H 1.08994 * 109.46999 * 300.00197 * 9 8 6 38 38 H 1.09001 * 109.46983 * 59.99898 * 9 8 6 39 39 H 1.09006 * 109.46932 * 299.99878 * 10 9 8 40 40 H 1.09001 * 109.47250 * 60.00020 * 10 9 8 41 41 H 1.09006 * 109.47050 * 299.99668 * 11 10 9 42 42 H 1.08991 * 109.47573 * 60.00257 * 11 10 9 43 43 H 1.09002 * 109.47003 * 299.99966 * 13 12 11 44 44 H 1.09003 * 109.46926 * 59.99658 * 13 12 11 45 45 H 1.08999 * 109.60729 * 64.51678 * 18 5 4 46 46 H 1.08993 * 109.61426 * 184.86026 * 18 5 4 47 47 H 1.09001 * 109.46732 * 304.60593 * 21 19 18 48 48 H 1.08996 * 109.47064 * 64.60087 * 21 19 18 49 49 H 1.08998 * 109.47112 * 184.60447 * 21 19 18 50 50 H 0.97006 * 119.99998 * 175.07082 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0482 -0.7311 -1.2446 5 7 3.4946 -0.9447 -1.0956 6 6 4.3533 -0.5076 -2.0379 7 8 3.9466 0.1637 -2.9666 8 7 5.6627 -0.8144 -1.9509 9 6 6.6143 -0.2425 -2.9069 10 6 8.0228 -0.7482 -2.5890 11 6 9.0166 -0.1505 -3.5869 12 8 10.3322 -0.6233 -3.2905 13 6 11.3416 -0.1224 -4.1691 14 6 12.7019 -0.6907 -3.7597 15 9 12.6665 -2.0870 -3.8380 16 9 13.6902 -0.1998 -4.6196 17 9 12.9927 -0.3044 -2.4470 18 6 3.9879 -1.6440 0.0992 19 6 3.4700 -0.9080 1.3466 20 1 3.9708 0.0556 1.4402 21 6 3.7389 -1.7536 2.5930 22 7 2.0232 -0.6993 1.1948 23 6 1.1508 -1.1435 2.1522 24 1 1.1795 -2.1746 2.4724 25 6 0.2295 -0.2686 2.7113 26 7 0.4574 1.0276 2.6923 27 14 -1.3338 -0.9307 3.4905 28 1 -2.1443 0.1993 4.0115 29 1 -2.1177 -1.6747 2.4722 30 1 -0.9817 -1.8432 4.6080 31 1 -0.3634 0.6245 0.8162 32 1 -0.3633 0.3946 -0.9488 33 1 -0.3633 -1.0190 0.1327 34 1 1.5444 -1.6929 -1.3403 35 1 1.8546 -0.1269 -2.1309 36 1 5.9753 -1.4138 -1.2552 37 1 6.3397 -0.5444 -3.9175 38 1 6.5932 0.8449 -2.8342 39 1 8.2976 -0.4466 -1.5782 40 1 8.0436 -1.8356 -2.6620 41 1 8.7419 -0.4518 -4.5979 42 1 8.9958 0.9367 -3.5135 43 1 11.1148 -0.4231 -5.1920 44 1 11.3694 0.9655 -4.1079 45 1 3.6220 -2.6708 0.0992 46 1 5.0778 -1.6441 0.0992 47 1 3.2953 -2.7409 2.4648 48 1 4.8144 -1.8546 2.7385 49 1 3.2986 -1.2676 3.4637 50 1 -0.2176 1.6436 3.0179 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864095684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:12 Heat of formation + Delta-G solvation = -195.354743 kcal Electronic energy + Delta-G solvation = -33815.747655 eV Core-core repulsion = 28657.434673 eV Total energy + Delta-G solvation = -5158.312981 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 367.187 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.54527 -48.10980 -47.99420 -40.00547 -38.85847 -37.52359 -35.50699 -34.25905 -32.83663 -32.33014 -31.17731 -29.87731 -27.77360 -26.32963 -26.05675 -24.89383 -23.78694 -23.47060 -22.04936 -20.39951 -20.17203 -19.17073 -19.08674 -19.08480 -18.22656 -17.72756 -16.99567 -16.86429 -16.20077 -15.90353 -15.48590 -15.01399 -14.92970 -14.88860 -14.59347 -14.51622 -14.46166 -14.33864 -14.17040 -14.16871 -13.95363 -13.83716 -13.67847 -13.15542 -12.97373 -12.47773 -12.34290 -12.17350 -12.01709 -11.72985 -11.61615 -11.50922 -11.48887 -11.36697 -10.90487 -10.84498 -10.57109 -10.48516 -10.43488 -10.31756 -10.05587 -9.91245 -9.82480 -9.56641 -9.01746 -8.30272 -7.91079 -6.45753 -5.76637 -3.59255 1.92513 2.67866 3.03905 3.30837 3.31769 3.38323 3.40871 3.48315 3.52847 3.92095 4.18618 4.38815 4.40723 4.42777 4.51689 4.63990 4.73327 4.95372 5.12628 5.12844 5.22406 5.35891 5.64105 5.66584 5.72324 5.75863 5.88763 6.02135 6.16897 6.24698 6.28367 6.30792 6.35804 6.47574 6.57770 6.60651 6.77981 6.87548 6.94067 7.02518 7.19473 7.32430 7.46502 7.67113 7.81581 8.27045 8.55393 8.90859 9.13503 9.67488 10.44799 11.10753 Molecular weight = 367.19amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.001544 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.894375 B =18134.247233 C =18840.606078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.182 3.818 3 H 0.031 0.969 4 C 0.112 3.888 5 N -0.615 5.615 6 C 0.705 3.295 7 O -0.602 6.602 8 N -0.752 5.752 9 C 0.144 3.856 10 C -0.132 4.132 11 C 0.069 3.931 12 O -0.373 6.373 13 C 0.019 3.981 14 C 0.461 3.539 15 F -0.176 7.176 16 F -0.178 7.178 17 F -0.175 7.175 18 C 0.099 3.901 19 C 0.156 3.844 20 H 0.029 0.971 21 C -0.128 4.128 22 N -0.575 5.575 23 C -0.267 4.267 24 H 0.053 0.947 25 C 0.039 3.961 26 N -0.869 5.869 27 Si 0.880 3.120 28 H -0.290 1.290 29 H -0.278 1.278 30 H -0.279 1.279 31 H 0.089 0.911 32 H 0.025 0.975 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.396 0.604 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.035 0.965 49 H 0.070 0.930 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.782 -3.281 -12.993 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.076 3.924 3 H 0.049 0.951 4 C -0.012 4.012 5 N -0.350 5.350 6 C 0.407 3.593 7 O -0.481 6.481 8 N -0.411 5.411 9 C 0.019 3.981 10 C -0.170 4.170 11 C -0.008 4.008 12 O -0.292 6.292 13 C -0.060 4.060 14 C 0.407 3.593 15 F -0.157 7.157 16 F -0.159 7.159 17 F -0.156 7.156 18 C -0.026 4.026 19 C 0.049 3.951 20 H 0.046 0.954 21 C -0.186 4.186 22 N -0.299 5.299 23 C -0.396 4.396 24 H 0.071 0.929 25 C -0.164 4.164 26 N -0.508 5.508 27 Si 0.708 3.292 28 H -0.216 1.216 29 H -0.204 1.204 30 H -0.204 1.204 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.089 0.911 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.474 -2.752 -13.361 24.602 hybrid contribution -0.447 -0.399 0.605 0.851 sum 20.027 -3.151 -12.756 23.953 Atomic orbital electron populations 1.22009 0.95039 1.02694 1.00482 1.20608 0.93735 0.93606 0.84498 0.95124 1.22347 0.77376 1.00665 1.00805 1.47209 1.07237 1.60144 1.20382 1.15836 0.80652 0.80166 0.82676 1.90861 1.77267 1.44506 1.35486 1.45160 1.06266 1.53512 1.36198 1.20885 0.85888 0.98292 0.92992 1.21687 0.92670 1.02305 1.00305 1.22501 0.80475 0.98726 0.99073 1.87893 1.16348 1.71082 1.53908 1.23499 0.85356 1.00692 0.96427 1.20184 0.87425 0.76496 0.75207 1.93225 1.96741 1.29835 1.95905 1.93215 1.64561 1.87748 1.70393 1.93229 1.94482 1.90709 1.37228 1.22439 0.96846 0.96582 0.86736 1.20927 0.87807 0.95303 0.91045 0.95371 1.21671 0.98117 0.99984 0.98860 1.43969 0.99136 1.67665 1.19166 1.18600 1.12936 0.92278 1.15795 0.92921 1.25494 1.00392 0.95183 0.95319 1.70219 1.32556 1.01562 1.46483 0.86782 0.84389 0.78445 0.79608 1.21575 1.20382 1.20450 0.89211 0.95642 0.92822 0.92356 0.90237 0.76724 0.91536 0.91609 0.89947 0.90055 0.91970 0.91896 0.88462 0.88428 0.91782 0.92100 0.93015 0.94555 0.91063 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 7.83 37.15 0.29 -2.91 16 2 C 0.18 4.11 3.26 -67.49 -0.22 3.89 16 3 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.11 2.22 5.91 -3.60 -0.02 2.20 16 5 N -0.61 -11.16 2.95 -177.94 -0.52 -11.68 16 6 C 0.71 12.48 8.29 -86.92 -0.72 11.76 16 7 O -0.60 -12.63 15.77 5.29 0.08 -12.54 16 8 N -0.75 -9.73 5.42 -65.23 -0.35 -10.08 16 9 C 0.14 1.47 5.68 -4.04 -0.02 1.44 16 10 C -0.13 -0.96 5.70 -26.74 -0.15 -1.11 16 11 C 0.07 0.41 5.94 37.15 0.22 0.63 16 12 O -0.37 -2.79 10.23 -35.23 -0.36 -3.15 16 13 C 0.02 0.09 5.90 37.16 0.22 0.31 16 14 C 0.46 3.23 3.32 37.16 0.12 3.35 16 15 F -0.18 -1.51 17.26 2.25 0.04 -1.47 16 16 F -0.18 -1.21 17.32 2.25 0.04 -1.17 16 17 F -0.18 -1.53 17.26 2.25 0.04 -1.49 16 18 C 0.10 1.61 5.85 -3.36 -0.02 1.59 16 19 C 0.16 3.10 3.67 -67.25 -0.25 2.85 16 20 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 21 C -0.13 -2.29 8.19 37.16 0.30 -1.99 16 22 N -0.57 -13.32 2.75 -156.76 -0.43 -13.75 16 23 C -0.27 -6.66 6.57 -15.06 -0.10 -6.76 16 24 H 0.05 1.33 7.29 -52.48 -0.38 0.95 16 25 C 0.04 1.00 3.14 -17.43 -0.05 0.94 16 26 N -0.87 -23.76 11.82 55.49 0.66 -23.11 16 27 Si 0.88 20.16 29.62 -169.99 -5.03 15.13 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 31 H 0.09 2.22 4.90 -51.93 -0.25 1.97 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 1.19 7.56 -51.93 -0.39 0.80 16 34 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 35 H 0.08 1.60 7.00 -51.93 -0.36 1.24 16 36 H 0.40 4.31 6.07 -40.82 -0.25 4.06 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 46 H 0.06 0.79 5.72 -51.93 -0.30 0.49 16 47 H 0.05 0.90 7.67 -51.93 -0.40 0.51 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 1.46 7.54 -51.93 -0.39 1.07 16 50 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -31.33 406.97 -7.89 -39.22 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.78 Total: 1.76 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -0.40 Total: 16.21 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.65 Total: -58.62 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.28 Total: -15.69 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.12 Total: -4.14 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.33 -7.89 -39.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.132 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds