Wall clock time and date at job start Tue Mar 31 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76201 * 102.99805 * 2 1 4 4 C 1.39044 * 120.04674 * 359.73073 * 3 2 1 5 5 C 1.38112 * 120.06021 * 179.71789 * 4 3 2 6 6 C 1.38202 * 120.15007 * 0.55388 * 5 4 3 7 7 C 1.38928 * 120.08647 * 359.71931 * 6 5 4 8 8 N 1.39922 * 120.02562 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99601 * 208.96068 * 8 7 6 10 10 O 1.21556 * 120.00520 * 5.25145 * 9 8 7 11 11 N 1.34781 * 119.99847 * 185.25501 * 9 8 7 12 12 C 1.46502 * 120.00022 * 184.46259 * 11 9 8 13 13 C 1.50698 * 109.46674 * 85.73176 * 12 11 9 14 14 C 1.38240 * 120.00024 * 274.04848 * 13 12 11 15 15 C 1.38236 * 119.99837 * 179.76562 * 14 13 12 16 16 C 1.38238 * 119.99978 * 0.51322 * 15 14 13 17 17 C 1.38228 * 119.99961 * 359.74471 * 16 15 14 18 18 C 1.38238 * 119.99932 * 94.32733 * 13 12 11 19 19 C 1.34774 * 119.99700 * 4.46767 * 11 9 8 20 20 O 1.21661 * 119.99949 * 126.59971 * 19 11 9 21 21 C 1.46241 * 119.99957 * 306.59025 * 19 11 9 22 22 H 1.08004 * 120.00055 * 168.15540 * 21 19 11 23 23 C 1.40120 * 120.00153 * 348.15619 * 21 19 11 24 24 N 1.30641 * 119.99858 * 358.06965 * 23 21 19 25 25 Si 1.86797 * 120.00161 * 178.07364 * 23 21 19 26 26 H 1.48506 * 109.47161 * 89.99938 * 25 23 21 27 27 H 1.48502 * 109.47389 * 209.99761 * 25 23 21 28 28 H 1.48500 * 109.47264 * 329.99824 * 25 23 21 29 29 C 1.38740 * 119.94075 * 0.02562 * 7 6 5 30 30 H 1.08995 * 109.47180 * 59.99853 * 1 2 3 31 31 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46772 * 299.99528 * 1 2 3 33 33 H 1.08000 * 119.97223 * 359.97438 * 4 3 2 34 34 H 1.08006 * 119.92285 * 180.27498 * 5 4 3 35 35 H 1.07997 * 119.95381 * 179.74652 * 6 5 4 36 36 H 0.96994 * 120.00201 * 28.96485 * 8 7 6 37 37 H 1.09000 * 109.46908 * 205.72800 * 12 11 9 38 38 H 1.09001 * 109.47184 * 325.73229 * 12 11 9 39 39 H 1.08001 * 119.99568 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.99596 * 180.23003 * 15 14 13 41 41 H 1.07998 * 119.99616 * 179.71627 * 16 15 14 42 42 H 1.08002 * 120.00375 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.00344 * 0.02562 * 18 13 12 44 44 H 0.97001 * 119.99794 * 185.00886 * 24 23 21 45 45 H 1.08000 * 120.07488 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1942 2.6659 -0.0057 5 6 1.5044 4.0117 0.0002 6 6 2.8249 4.4196 0.0002 7 6 3.8451 3.4767 0.0001 8 7 5.1816 3.8911 0.0006 9 6 6.1278 3.1154 -0.5646 10 8 5.8095 2.1034 -1.1580 11 7 7.4270 3.4618 -0.4718 12 6 8.4468 2.6733 -1.1679 13 6 8.5820 3.1667 -2.5854 14 6 7.7461 2.6756 -3.5709 15 6 7.8670 3.1318 -4.8702 16 6 8.8307 4.0711 -5.1862 17 6 9.6701 4.5581 -4.2018 18 6 9.5458 4.1060 -2.9014 19 6 7.7880 4.5334 0.2616 20 8 8.6361 4.4208 1.1265 21 6 7.1603 5.8315 0.0174 22 1 7.3020 6.6403 0.7190 23 6 6.3751 6.0259 -1.1268 24 7 6.2346 5.0595 -1.9945 25 14 5.5295 7.6671 -1.4114 26 1 6.4311 8.5615 -2.1812 27 1 4.2750 7.4515 -2.1763 28 1 5.2102 8.2929 -0.1031 29 6 3.5376 2.1238 -0.0004 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.1613 2.3505 -0.0105 34 1 0.7133 4.7470 0.0003 35 1 3.0639 5.4728 0.0007 36 1 5.4270 4.7365 0.4078 37 1 9.4019 2.7795 -0.6536 38 1 8.1526 1.6238 -1.1750 39 1 6.9959 1.9388 -3.3248 40 1 7.2114 2.7509 -5.6394 41 1 8.9281 4.4240 -6.2022 42 1 10.4234 5.2917 -4.4487 43 1 10.2021 4.4860 -2.1325 44 1 5.7518 5.2163 -2.8211 45 1 4.3290 1.3889 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000170824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:46 Heat of formation + Delta-G solvation = 10.711142 kcal Electronic energy + Delta-G solvation = -32145.216798 eV Core-core repulsion = 28026.894800 eV Total energy + Delta-G solvation = -4118.321998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43180 -38.84313 -38.10141 -36.88189 -34.51982 -33.94974 -32.91714 -30.98287 -30.63501 -30.21812 -29.64351 -28.24778 -27.11216 -25.43052 -22.73716 -22.57605 -21.94239 -21.35282 -20.78938 -19.30599 -18.22931 -17.78709 -16.39311 -16.11058 -15.91997 -15.66203 -15.47910 -14.82403 -14.62749 -14.55855 -14.34424 -14.13568 -13.96950 -13.82545 -13.62912 -13.36214 -12.99290 -12.75845 -12.72646 -12.47529 -12.30840 -12.13872 -11.99356 -11.85380 -11.53862 -11.41146 -11.37729 -11.15679 -10.89363 -10.75490 -10.62155 -10.31557 -10.16697 -9.95840 -9.46408 -9.33713 -9.17924 -8.49057 -8.23242 -8.18488 -7.98401 -7.43137 -7.15890 -6.89671 -5.34666 1.55868 1.66571 1.77839 1.98231 2.10440 2.56656 2.74214 2.91661 2.95618 3.43526 3.56522 3.71330 3.99534 4.45610 4.58736 4.85722 4.99592 5.00241 5.01030 5.16850 5.32893 5.46073 5.46693 5.56952 5.57918 5.58763 5.76537 5.87260 5.92903 5.96045 6.13979 6.17310 6.28308 6.37153 6.59080 6.63639 6.70150 6.72038 6.78821 6.86228 6.99168 7.08409 7.13226 7.26723 7.40579 7.52373 7.60716 7.68847 7.78454 8.11253 8.36729 9.07179 9.34832 9.68098 9.92675 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.003854 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.610029 B = 7263.043672 C = 8221.143234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.121 6.121 3 C -0.063 4.063 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.166 4.166 7 C 0.217 3.783 8 N -0.672 5.672 9 C 0.769 3.231 10 O -0.595 6.595 11 N -0.570 5.570 12 C 0.173 3.827 13 C -0.065 4.065 14 C -0.073 4.073 15 C -0.131 4.131 16 C -0.129 4.129 17 C -0.131 4.131 18 C -0.097 4.097 19 C 0.564 3.436 20 O -0.595 6.595 21 C -0.540 4.540 22 H 0.098 0.902 23 C 0.080 3.920 24 N -0.761 5.761 25 Si 0.909 3.091 26 H -0.265 1.265 27 H -0.271 1.271 28 H -0.257 1.257 29 C -0.116 4.116 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.422 0.578 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.291 0.709 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 -2.859 -2.735 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.120 5.880 3 C -0.176 4.176 4 C -0.199 4.199 5 C -0.099 4.099 6 C -0.190 4.190 7 C 0.116 3.884 8 N -0.322 5.322 9 C 0.474 3.526 10 O -0.475 6.475 11 N -0.314 5.314 12 C 0.050 3.950 13 C -0.066 4.066 14 C -0.091 4.091 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.116 4.116 19 C 0.376 3.624 20 O -0.482 6.482 21 C -0.576 4.576 22 H 0.116 0.884 23 C -0.142 4.142 24 N -0.388 5.388 25 Si 0.732 3.268 26 H -0.190 1.190 27 H -0.196 1.196 28 H -0.181 1.181 29 C -0.142 4.142 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.268 0.732 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.103 0.897 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.248 -4.733 -2.794 9.097 hybrid contribution -1.188 2.723 -0.472 3.008 sum -8.436 -2.010 -3.266 9.267 Atomic orbital electron populations 1.23619 0.95793 1.06489 1.05405 1.85518 1.05159 1.04292 1.93037 1.21431 0.96260 0.95653 1.04288 1.20876 0.97491 0.93148 1.08388 1.20660 0.95526 0.94997 0.98759 1.20834 0.92082 0.98913 1.07136 1.17536 0.84040 0.92225 0.94598 1.43483 1.03639 1.25257 1.59773 1.14869 0.80220 0.81168 0.76388 1.90731 1.80899 1.27999 1.47913 1.45150 1.05209 1.30574 1.50423 1.20043 0.91456 0.95073 0.88379 1.20028 0.94903 0.96368 0.95321 1.21037 0.96964 0.99109 0.92005 1.20974 0.98708 0.98578 0.96643 1.20916 0.96907 0.98455 0.98463 1.20900 1.00022 1.00500 0.93473 1.20938 0.98410 0.96334 0.95914 1.18259 0.81938 0.83597 0.78566 1.90535 1.36805 1.86391 1.34426 1.21714 1.30341 0.96907 1.08599 0.88365 1.26031 0.94278 0.98853 0.95074 1.69404 1.30367 1.31868 1.07180 0.86239 0.79271 0.81350 0.79941 1.19006 1.19600 1.18054 1.20892 0.94794 0.95455 1.03060 0.89994 0.87879 0.90010 0.86631 0.86074 0.86062 0.73226 0.90135 0.90085 0.85815 0.87307 0.87459 0.87268 0.86992 0.89698 0.83538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.15 101.05 0.92 -0.45 16 2 S -0.12 -1.73 22.56 -107.50 -2.43 -4.15 16 3 C -0.06 -1.05 6.11 -39.06 -0.24 -1.29 16 4 C -0.17 -2.53 9.36 -39.33 -0.37 -2.90 16 5 C -0.08 -1.15 10.03 -39.64 -0.40 -1.54 16 6 C -0.17 -2.82 9.95 -39.34 -0.39 -3.21 16 7 C 0.22 4.26 6.36 -83.72 -0.53 3.73 16 8 N -0.67 -14.42 3.86 -14.25 -0.06 -14.48 16 9 C 0.77 17.72 5.44 -86.91 -0.47 17.25 16 10 O -0.60 -14.17 12.21 5.32 0.06 -14.10 16 11 N -0.57 -13.28 1.68 -123.62 -0.21 -13.49 16 12 C 0.17 3.64 5.45 -5.19 -0.03 3.61 16 13 C -0.06 -1.29 4.59 -104.62 -0.48 -1.77 16 14 C -0.07 -1.39 9.46 -39.58 -0.37 -1.77 16 15 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 16 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 17 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 18 C -0.10 -1.85 9.68 -39.58 -0.38 -2.23 16 19 C 0.56 14.25 6.16 -13.05 -0.08 14.17 16 20 O -0.60 -16.57 17.52 5.22 0.09 -16.48 16 21 C -0.54 -12.83 7.91 -35.66 -0.28 -13.11 16 22 H 0.10 2.32 7.85 -52.48 -0.41 1.91 16 23 C 0.08 1.75 3.90 -17.35 -0.07 1.68 16 24 N -0.76 -16.91 8.17 55.55 0.45 -16.45 16 25 Si 0.91 16.95 29.56 -169.99 -5.03 11.93 16 26 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 27 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 28 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 29 C -0.12 -2.25 8.42 -39.18 -0.33 -2.58 16 30 H 0.08 0.73 7.73 -51.93 -0.40 0.33 16 31 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.08 0.71 7.76 -51.93 -0.40 0.30 16 33 H 0.12 1.35 5.87 -52.49 -0.31 1.04 16 34 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.42 9.16 4.90 -40.82 -0.20 8.96 16 37 H 0.08 1.66 7.63 -51.93 -0.40 1.26 16 38 H 0.08 1.63 7.46 -51.93 -0.39 1.25 16 39 H 0.12 2.53 7.07 -52.49 -0.37 2.16 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 44 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 45 H 0.15 3.14 6.08 -52.49 -0.32 2.82 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -27.78 386.15 -11.27 -39.05 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -5.29 Total: 20.51 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -4.70 Total: 1.83 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.19 Total: -44.41 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: 0.16 Total: -30.58 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.43 Total: -4.15 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.78 -11.27 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.765 kcal (2) G-P(sol) polarization free energy of solvation -27.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds