Wall clock time and date at job start Tue Mar 31 2020 06:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76201 * 102.99805 * 2 1 4 4 C 1.39044 * 120.04674 * 359.73073 * 3 2 1 5 5 C 1.38112 * 120.06021 * 179.71789 * 4 3 2 6 6 C 1.38202 * 120.15007 * 0.55388 * 5 4 3 7 7 C 1.38928 * 120.08647 * 359.71931 * 6 5 4 8 8 N 1.39922 * 120.02562 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99601 * 208.96068 * 8 7 6 10 10 O 1.21556 * 120.00520 * 5.25145 * 9 8 7 11 11 N 1.34781 * 119.99847 * 185.25501 * 9 8 7 12 12 C 1.46502 * 120.00022 * 184.46259 * 11 9 8 13 13 C 1.50698 * 109.46674 * 85.73176 * 12 11 9 14 14 C 1.38240 * 120.00024 * 274.04848 * 13 12 11 15 15 C 1.38236 * 119.99837 * 179.76562 * 14 13 12 16 16 C 1.38238 * 119.99978 * 0.51322 * 15 14 13 17 17 C 1.38228 * 119.99961 * 359.74471 * 16 15 14 18 18 C 1.38238 * 119.99932 * 94.32733 * 13 12 11 19 19 C 1.34774 * 119.99700 * 4.46767 * 11 9 8 20 20 O 1.21661 * 119.99949 * 126.59971 * 19 11 9 21 21 C 1.46241 * 119.99957 * 306.59025 * 19 11 9 22 22 H 1.08004 * 120.00055 * 168.15540 * 21 19 11 23 23 C 1.40120 * 120.00153 * 348.15619 * 21 19 11 24 24 N 1.30641 * 119.99858 * 358.06965 * 23 21 19 25 25 Si 1.86797 * 120.00161 * 178.07364 * 23 21 19 26 26 H 1.48506 * 109.47161 * 89.99938 * 25 23 21 27 27 H 1.48502 * 109.47389 * 209.99761 * 25 23 21 28 28 H 1.48500 * 109.47264 * 329.99824 * 25 23 21 29 29 C 1.38740 * 119.94075 * 0.02562 * 7 6 5 30 30 H 1.08995 * 109.47180 * 59.99853 * 1 2 3 31 31 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46772 * 299.99528 * 1 2 3 33 33 H 1.08000 * 119.97223 * 359.97438 * 4 3 2 34 34 H 1.08006 * 119.92285 * 180.27498 * 5 4 3 35 35 H 1.07997 * 119.95381 * 179.74652 * 6 5 4 36 36 H 0.96994 * 120.00201 * 28.96485 * 8 7 6 37 37 H 1.09000 * 109.46908 * 205.72800 * 12 11 9 38 38 H 1.09001 * 109.47184 * 325.73229 * 12 11 9 39 39 H 1.08001 * 119.99568 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.99596 * 180.23003 * 15 14 13 41 41 H 1.07998 * 119.99616 * 179.71627 * 16 15 14 42 42 H 1.08002 * 120.00375 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.00344 * 0.02562 * 18 13 12 44 44 H 0.97001 * 119.99794 * 185.00886 * 24 23 21 45 45 H 1.08000 * 120.07488 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1942 2.6659 -0.0057 5 6 1.5044 4.0117 0.0002 6 6 2.8249 4.4196 0.0002 7 6 3.8451 3.4767 0.0001 8 7 5.1816 3.8911 0.0006 9 6 6.1278 3.1154 -0.5646 10 8 5.8095 2.1034 -1.1580 11 7 7.4270 3.4618 -0.4718 12 6 8.4468 2.6733 -1.1679 13 6 8.5820 3.1667 -2.5854 14 6 7.7461 2.6756 -3.5709 15 6 7.8670 3.1318 -4.8702 16 6 8.8307 4.0711 -5.1862 17 6 9.6701 4.5581 -4.2018 18 6 9.5458 4.1060 -2.9014 19 6 7.7880 4.5334 0.2616 20 8 8.6361 4.4208 1.1265 21 6 7.1603 5.8315 0.0174 22 1 7.3020 6.6403 0.7190 23 6 6.3751 6.0259 -1.1268 24 7 6.2346 5.0595 -1.9945 25 14 5.5295 7.6671 -1.4114 26 1 6.4311 8.5615 -2.1812 27 1 4.2750 7.4515 -2.1763 28 1 5.2102 8.2929 -0.1031 29 6 3.5376 2.1238 -0.0004 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.1613 2.3505 -0.0105 34 1 0.7133 4.7470 0.0003 35 1 3.0639 5.4728 0.0007 36 1 5.4270 4.7365 0.4078 37 1 9.4019 2.7795 -0.6536 38 1 8.1526 1.6238 -1.1750 39 1 6.9959 1.9388 -3.3248 40 1 7.2114 2.7509 -5.6394 41 1 8.9281 4.4240 -6.2022 42 1 10.4234 5.2917 -4.4487 43 1 10.2021 4.4860 -2.1325 44 1 5.7518 5.2163 -2.8211 45 1 4.3290 1.3889 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000170824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:45 Heat of formation + Delta-G solvation = -1.322650 kcal Electronic energy + Delta-G solvation = -32145.738622 eV Core-core repulsion = 28026.894800 eV Total energy + Delta-G solvation = -4118.843822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.13855 -40.28632 -39.57466 -38.67732 -36.18973 -35.72500 -34.61520 -32.51214 -31.91193 -31.64041 -30.77597 -29.35405 -28.91215 -27.03355 -24.27573 -23.97445 -23.35936 -22.95156 -22.24046 -21.02091 -19.93028 -19.20633 -17.86123 -17.71506 -17.30827 -17.23524 -17.11177 -16.28408 -16.16010 -16.06759 -15.83511 -15.61981 -15.22051 -15.15826 -14.96854 -14.63831 -14.32866 -14.25039 -14.16681 -13.96511 -13.72210 -13.59717 -13.40248 -13.36106 -13.11199 -12.95229 -12.75043 -12.66988 -12.39976 -12.20352 -12.07942 -11.76616 -11.55072 -11.25864 -11.09033 -10.97038 -10.48468 -10.40713 -9.92116 -9.65625 -9.50998 -8.91822 -8.62876 -8.34890 -7.22801 0.25903 0.46070 0.54205 0.60614 0.66861 1.16327 1.37989 1.51799 1.57055 1.71784 1.95036 2.13708 2.53991 2.91681 2.97336 3.13172 3.31766 3.94854 4.01098 4.02492 4.17122 4.23779 4.27839 4.31519 4.32096 4.34045 4.38455 4.56866 4.57010 4.64790 4.80209 4.83925 4.87559 4.89252 5.04296 5.21152 5.26618 5.28963 5.36605 5.43651 5.54857 5.63248 5.67902 5.71561 5.74415 5.90095 5.94567 6.13306 6.26508 6.35135 6.55813 7.28177 7.52089 7.86367 8.14761 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.003854 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.610029 B = 7263.043672 C = 8221.143234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.166 6.166 3 C -0.067 4.067 4 C -0.163 4.163 5 C -0.067 4.067 6 C -0.172 4.172 7 C 0.184 3.816 8 N -0.673 5.673 9 C 0.765 3.235 10 O -0.611 6.611 11 N -0.573 5.573 12 C 0.170 3.830 13 C -0.076 4.076 14 C -0.085 4.085 15 C -0.129 4.129 16 C -0.121 4.121 17 C -0.128 4.128 18 C -0.115 4.115 19 C 0.548 3.452 20 O -0.641 6.641 21 C -0.550 4.550 22 H 0.095 0.905 23 C 0.056 3.944 24 N -0.760 5.760 25 Si 0.972 3.028 26 H -0.267 1.267 27 H -0.261 1.261 28 H -0.248 1.248 29 C -0.142 4.142 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.165 0.835 35 H 0.131 0.869 36 H 0.418 0.582 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.101 0.899 44 H 0.291 0.709 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 -1.074 -4.837 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.075 5.925 3 C -0.181 4.181 4 C -0.187 4.187 5 C -0.087 4.087 6 C -0.195 4.195 7 C 0.085 3.915 8 N -0.323 5.323 9 C 0.469 3.531 10 O -0.493 6.493 11 N -0.316 5.316 12 C 0.048 3.952 13 C -0.078 4.078 14 C -0.104 4.104 15 C -0.147 4.147 16 C -0.139 4.139 17 C -0.146 4.146 18 C -0.134 4.134 19 C 0.363 3.637 20 O -0.532 6.532 21 C -0.584 4.584 22 H 0.113 0.887 23 C -0.166 4.166 24 N -0.386 5.386 25 Si 0.791 3.209 26 H -0.192 1.192 27 H -0.185 1.185 28 H -0.171 1.171 29 C -0.168 4.168 30 H 0.113 0.887 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.172 0.828 34 H 0.182 0.818 35 H 0.149 0.851 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.120 0.880 44 H 0.103 0.897 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.892 -2.987 -4.906 12.314 hybrid contribution -0.208 2.064 0.139 2.079 sum -11.100 -0.923 -4.766 12.115 Atomic orbital electron populations 1.23762 0.90733 1.08514 1.06754 1.85716 1.10678 1.03337 1.92787 1.21620 0.95610 0.97303 1.03518 1.21353 0.98649 0.92748 1.05967 1.21153 0.95314 0.95966 0.96261 1.21062 0.92590 0.98834 1.07052 1.17853 0.83649 0.93050 0.96916 1.43391 1.04399 1.24748 1.59759 1.14978 0.80309 0.81238 0.76529 1.90710 1.81112 1.28634 1.48802 1.45125 1.05720 1.30387 1.50389 1.20092 0.90698 0.94833 0.89581 1.19873 0.96070 0.97459 0.94372 1.20909 0.96832 0.99454 0.93181 1.21254 0.99156 0.98353 0.95976 1.21309 0.95443 0.97147 0.99971 1.21228 1.00496 1.00435 0.92471 1.20985 0.98491 0.96813 0.97081 1.18612 0.81905 0.84652 0.78502 1.90484 1.39031 1.87135 1.36517 1.21786 1.31087 0.96054 1.09469 0.88730 1.26627 0.94019 1.02015 0.93969 1.69503 1.29082 1.33143 1.06854 0.85302 0.78324 0.77054 0.80173 1.19202 1.18530 1.17100 1.20696 0.95571 0.94920 1.05634 0.88689 0.85583 0.88407 0.82831 0.81754 0.85129 0.73684 0.90923 0.90500 0.87934 0.84966 0.83697 0.84550 0.88035 0.89687 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.15 113.37 1.04 -0.94 16 2 S -0.17 -4.64 22.56 -56.49 -1.27 -5.91 16 3 C -0.07 -2.20 6.11 22.60 0.14 -2.06 16 4 C -0.16 -4.17 9.36 22.43 0.21 -3.96 16 5 C -0.07 -1.69 10.03 22.23 0.22 -1.47 16 6 C -0.17 -5.58 9.95 22.43 0.22 -5.35 16 7 C 0.18 7.42 6.36 38.13 0.24 7.66 16 8 N -0.67 -30.31 3.86 -317.27 -1.23 -31.53 16 9 C 0.76 37.59 5.44 179.05 0.97 38.56 16 10 O -0.61 -31.31 12.21 -3.89 -0.05 -31.36 16 11 N -0.57 -28.62 1.68 -781.52 -1.32 -29.94 16 12 C 0.17 7.79 5.45 85.63 0.47 8.26 16 13 C -0.08 -3.18 4.59 -19.86 -0.09 -3.28 16 14 C -0.08 -3.36 9.46 22.27 0.21 -3.15 16 15 C -0.13 -4.27 10.05 22.27 0.22 -4.04 16 16 C -0.12 -3.59 10.05 22.27 0.22 -3.37 16 17 C -0.13 -4.16 10.05 22.27 0.22 -3.94 16 18 C -0.11 -4.47 9.68 22.27 0.22 -4.25 16 19 C 0.55 29.45 6.16 86.32 0.53 29.98 16 20 O -0.64 -38.24 17.52 -4.23 -0.07 -38.31 16 21 C -0.55 -26.99 7.91 24.81 0.20 -26.80 16 22 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 23 C 0.06 2.45 3.90 85.33 0.33 2.78 16 24 N -0.76 -34.10 8.17 21.85 0.18 -33.92 16 25 Si 0.97 33.57 29.56 68.60 2.03 35.60 16 26 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 27 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 28 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 29 C -0.14 -5.75 8.42 22.53 0.19 -5.56 16 30 H 0.09 1.26 7.73 -2.39 -0.02 1.25 16 31 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 1.24 7.76 -2.39 -0.02 1.22 16 33 H 0.15 2.75 5.87 -2.91 -0.02 2.73 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 36 H 0.42 18.95 4.90 -92.71 -0.45 18.50 16 37 H 0.07 3.32 7.63 -2.39 -0.02 3.30 16 38 H 0.08 3.45 7.46 -2.39 -0.02 3.43 16 39 H 0.10 4.45 7.07 -2.91 -0.02 4.43 16 40 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 41 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 43 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.29 12.72 8.30 -92.71 -0.77 11.95 16 45 H 0.11 5.25 6.08 -2.91 -0.02 5.23 16 Total: -1.00 -65.73 386.15 4.63 -61.11 By element: Atomic # 1 Polarization: 54.62 SS G_CDS: 0.59 Total: 55.20 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 5.77 Total: 19.07 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -2.36 Total: -95.39 kcal Atomic # 8 Polarization: -69.55 SS G_CDS: -0.12 Total: -69.67 kcal Atomic # 14 Polarization: 33.57 SS G_CDS: 2.03 Total: 35.60 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.27 Total: -5.91 kcal Total: -65.73 4.63 -61.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.782 kcal (2) G-P(sol) polarization free energy of solvation -65.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds