Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76198 * 102.99730 * 2 1 4 4 C 1.38973 * 120.00651 * 179.97438 * 3 2 1 5 5 C 1.38028 * 119.98532 * 180.30181 * 4 3 2 6 6 C 1.38884 * 120.01508 * 359.44572 * 5 4 3 7 7 N 1.40118 * 119.99252 * 180.25937 * 6 5 4 8 8 C 1.34776 * 120.00216 * 341.30718 * 7 6 5 9 9 O 1.21571 * 119.99649 * 335.54759 * 8 7 6 10 10 N 1.34776 * 120.00364 * 155.55478 * 8 7 6 11 11 C 1.46504 * 120.00016 * 185.60068 * 10 8 7 12 12 C 1.50705 * 109.46885 * 95.26844 * 11 10 8 13 13 C 1.38235 * 119.99819 * 269.72835 * 12 11 10 14 14 C 1.38232 * 119.99934 * 179.76917 * 13 12 11 15 15 C 1.38237 * 120.00113 * 0.50252 * 14 13 12 16 16 C 1.38243 * 119.99786 * 359.74911 * 15 14 13 17 17 C 1.38231 * 119.99935 * 89.99644 * 12 11 10 18 18 C 1.34774 * 119.99958 * 5.60035 * 10 8 7 19 19 O 1.21670 * 119.99806 * 304.93586 * 18 10 8 20 20 C 1.46210 * 120.00331 * 124.94018 * 18 10 8 21 21 H 1.08002 * 120.00581 * 168.95330 * 20 18 10 22 22 C 1.40123 * 119.99891 * 348.94623 * 20 18 10 23 23 N 1.30645 * 119.99683 * 353.81296 * 22 20 18 24 24 Si 1.86797 * 120.00005 * 173.81624 * 22 20 18 25 25 H 1.48499 * 109.47263 * 94.99510 * 24 22 20 26 26 H 1.48506 * 109.46730 * 214.98925 * 24 22 20 27 27 H 1.48494 * 109.47228 * 334.98682 * 24 22 20 28 28 C 1.38888 * 120.01438 * 0.55417 * 6 5 4 29 29 C 1.38027 * 120.01296 * 359.72245 * 28 6 5 30 30 H 1.08998 * 109.47137 * 300.00262 * 1 2 3 31 31 H 1.09005 * 109.47107 * 59.99897 * 1 2 3 32 32 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 33 33 H 1.07998 * 120.00447 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.99132 * 179.70380 * 5 4 3 35 35 H 0.97003 * 119.99938 * 161.30945 * 7 6 5 36 36 H 1.08998 * 109.46824 * 215.26571 * 11 10 8 37 37 H 1.08992 * 109.47032 * 335.27166 * 11 10 8 38 38 H 1.08001 * 120.00273 * 359.97438 * 13 12 11 39 39 H 1.08002 * 120.00384 * 180.22428 * 14 13 12 40 40 H 1.07990 * 120.00352 * 179.72765 * 15 14 13 41 41 H 1.07999 * 119.99868 * 179.97438 * 16 15 14 42 42 H 1.07998 * 120.00143 * 0.02562 * 17 12 11 43 43 H 0.96998 * 119.99682 * 185.04411 * 23 22 20 44 44 H 1.08000 * 119.99113 * 179.70300 * 28 6 5 45 45 H 1.08000 * 120.00797 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5393 2.1234 0.0005 5 6 3.8492 3.4684 0.0068 6 6 2.8334 4.4155 0.0010 7 7 3.1486 5.7807 0.0019 8 6 4.3755 6.1889 0.3822 9 8 5.0453 5.4938 1.1212 10 7 4.8597 7.3676 -0.0567 11 6 6.2377 7.7552 0.2554 12 6 7.1385 7.3746 -0.8913 13 6 7.7434 6.1318 -0.9119 14 6 8.5658 5.7808 -1.9661 15 6 8.7917 6.6765 -2.9945 16 6 8.1909 7.9213 -2.9713 17 6 7.3642 8.2703 -1.9197 18 6 4.0764 8.1897 -0.7826 19 8 3.5417 7.7820 -1.7966 20 6 3.8691 9.5713 -0.3516 21 1 3.3941 10.2786 -1.0153 22 6 4.2866 9.9778 0.9227 23 7 4.7499 9.0978 1.7699 24 14 4.1807 11.7780 1.4102 25 1 2.9091 12.0198 2.1380 26 1 5.3272 12.1209 2.2896 27 1 4.2219 12.6243 0.1907 28 6 1.5051 4.0096 0.0005 29 6 1.1942 2.6648 -0.0001 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.3293 1.3870 0.0005 34 1 4.8820 3.7844 0.0121 35 1 2.4837 6.4322 -0.2711 36 1 6.2852 8.8328 0.4125 37 1 6.5637 7.2414 1.1595 38 1 7.5708 5.4337 -0.1061 39 1 9.0356 4.8085 -1.9840 40 1 9.4377 6.4040 -3.8158 41 1 8.3676 8.6213 -3.7745 42 1 6.8954 9.2430 -1.9012 43 1 4.9702 9.3658 2.6757 44 1 0.7155 4.7464 0.0008 45 1 0.1613 2.3493 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000170902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -9.893702 kcal Electronic energy + Delta-G solvation = -31145.357066 eV Core-core repulsion = 27026.141574 eV Total energy + Delta-G solvation = -4119.215491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21235 -40.42479 -39.71249 -38.76227 -36.40090 -35.57774 -34.85240 -32.53974 -32.21242 -31.78713 -30.68596 -29.51749 -28.94132 -27.12182 -24.53484 -23.89303 -23.51113 -23.14215 -22.28764 -21.07965 -19.92684 -19.13935 -18.54614 -18.00545 -17.51609 -17.22091 -16.74448 -16.55009 -16.11589 -15.92135 -15.74552 -15.72966 -15.42103 -15.31494 -15.03836 -14.66334 -14.53923 -14.30603 -14.14265 -14.00547 -13.85791 -13.69258 -13.57633 -13.45019 -13.15246 -12.90807 -12.84879 -12.62181 -12.48052 -12.18440 -12.12368 -11.92588 -11.83454 -11.37444 -11.17869 -11.03394 -10.42798 -10.05733 -9.94286 -9.82666 -9.70966 -9.61188 -8.71023 -8.09215 -7.23610 0.15421 0.32750 0.36904 0.49472 0.63265 1.17543 1.40342 1.53942 1.54626 1.65128 1.82480 2.07687 2.17498 2.74953 2.81828 3.07723 3.18929 3.78236 3.89404 3.96288 3.99382 4.16040 4.27699 4.29676 4.32390 4.32558 4.36759 4.45131 4.48661 4.63528 4.76068 4.86536 4.93907 4.99280 5.02033 5.04405 5.13001 5.16781 5.19897 5.24681 5.36711 5.48904 5.56351 5.57495 5.72069 5.85431 5.94844 5.98557 6.12385 6.19892 6.55949 6.87755 7.47242 7.74133 8.15352 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.009442 B = 0.003147 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.618617 B = 8895.087903 C =10977.995921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.143 6.143 3 C -0.124 4.124 4 C -0.073 4.073 5 C -0.144 4.144 6 C 0.167 3.833 7 N -0.683 5.683 8 C 0.714 3.286 9 O -0.597 6.597 10 N -0.547 5.547 11 C 0.200 3.800 12 C -0.126 4.126 13 C -0.118 4.118 14 C -0.127 4.127 15 C -0.118 4.118 16 C -0.126 4.126 17 C -0.118 4.118 18 C 0.544 3.456 19 O -0.633 6.633 20 C -0.534 4.534 21 H 0.093 0.907 22 C 0.047 3.953 23 N -0.799 5.799 24 Si 0.991 3.009 25 H -0.263 1.263 26 H -0.261 1.261 27 H -0.258 1.258 28 C -0.149 4.149 29 C -0.094 4.094 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.410 0.590 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.146 0.854 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.113 0.887 43 H 0.297 0.703 44 H 0.143 0.857 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 -8.461 -1.713 8.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.097 5.903 3 C -0.237 4.237 4 C -0.097 4.097 5 C -0.167 4.167 6 C 0.069 3.931 7 N -0.328 5.328 8 C 0.418 3.582 9 O -0.477 6.477 10 N -0.288 5.288 11 C 0.078 3.922 12 C -0.127 4.127 13 C -0.137 4.137 14 C -0.145 4.145 15 C -0.136 4.136 16 C -0.144 4.144 17 C -0.136 4.136 18 C 0.360 3.640 19 O -0.523 6.523 20 C -0.568 4.568 21 H 0.111 0.889 22 C -0.171 4.171 23 N -0.428 5.428 24 Si 0.811 3.189 25 H -0.188 1.188 26 H -0.185 1.185 27 H -0.181 1.181 28 C -0.171 4.171 29 C -0.117 4.117 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.135 0.865 35 H 0.247 0.753 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.163 0.837 40 H 0.173 0.827 41 H 0.164 0.836 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.161 0.839 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.189 -10.120 -1.593 10.246 hybrid contribution -1.123 2.542 0.474 2.819 sum -1.311 -7.578 -1.119 7.772 Atomic orbital electron populations 1.23784 0.91551 1.08582 1.06556 1.85343 1.10003 1.01637 1.93337 1.21701 0.96108 0.97741 1.08180 1.20676 0.95474 0.94385 0.99162 1.21003 0.98947 0.92732 1.03976 1.18052 0.94844 0.81973 0.98276 1.42822 1.13889 1.06878 1.69256 1.15956 0.81303 0.81401 0.79546 1.90744 1.60636 1.56843 1.39444 1.45272 1.14088 1.17052 1.52411 1.19963 0.76985 1.01567 0.93730 1.20669 0.98515 0.95574 0.97932 1.21207 0.97593 0.95422 0.99447 1.21438 0.98437 1.00724 0.93894 1.21512 0.99832 0.93302 0.98963 1.21446 0.96979 0.97927 0.98029 1.21227 0.98470 0.99535 0.94417 1.18558 0.77345 0.87241 0.80845 1.90518 1.54733 1.79218 1.27872 1.21837 1.38299 0.95041 1.01601 0.88935 1.26804 0.90297 1.04698 0.95351 1.69895 1.29181 1.37739 1.05955 0.85025 0.79309 0.75492 0.79095 1.18813 1.18489 1.18136 1.20861 0.93425 0.97322 1.05541 1.21184 0.99505 0.91039 0.99996 0.88892 0.88850 0.85395 0.84301 0.86519 0.75319 0.88889 0.90964 0.87158 0.83662 0.82657 0.83594 0.86932 0.89165 0.83934 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.15 113.37 1.04 -0.74 16 2 S -0.14 -3.16 22.56 -56.49 -1.27 -4.43 16 3 C -0.12 -3.53 6.11 22.62 0.14 -3.39 16 4 C -0.07 -2.41 9.78 22.40 0.22 -2.19 16 5 C -0.14 -5.72 8.72 22.37 0.20 -5.53 16 6 C 0.17 6.76 6.46 38.13 0.25 7.01 16 7 N -0.68 -31.53 4.82 -317.03 -1.53 -33.06 16 8 C 0.71 35.98 7.62 179.05 1.37 37.34 16 9 O -0.60 -30.96 13.62 -3.94 -0.05 -31.01 16 10 N -0.55 -27.40 1.45 -781.53 -1.14 -28.53 16 11 C 0.20 9.19 3.83 85.63 0.33 9.52 16 12 C -0.13 -5.24 5.42 -19.87 -0.11 -5.35 16 13 C -0.12 -4.49 9.70 22.27 0.22 -4.28 16 14 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 15 C -0.12 -3.27 10.05 22.27 0.22 -3.04 16 16 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 17 C -0.12 -4.52 9.70 22.27 0.22 -4.30 16 18 C 0.54 29.01 5.73 86.31 0.49 29.51 16 19 O -0.63 -36.56 16.49 -4.25 -0.07 -36.63 16 20 C -0.53 -26.86 9.39 24.80 0.23 -26.63 16 21 H 0.09 4.62 7.86 -2.91 -0.02 4.59 16 22 C 0.05 2.12 4.52 85.33 0.39 2.51 16 23 N -0.80 -36.81 9.33 21.85 0.20 -36.61 16 24 Si 0.99 34.21 29.57 68.60 2.03 36.24 16 25 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 26 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 27 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 28 C -0.15 -4.80 9.91 22.38 0.22 -4.58 16 29 C -0.09 -2.50 9.36 22.39 0.21 -2.29 16 30 H 0.09 1.09 7.74 -2.39 -0.02 1.07 16 31 H 0.09 1.09 7.74 -2.39 -0.02 1.07 16 32 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.12 5.19 6.03 -2.91 -0.02 5.18 16 35 H 0.41 19.11 7.05 -92.71 -0.65 18.46 16 36 H 0.09 4.32 5.47 -2.39 -0.01 4.31 16 37 H 0.07 3.43 7.15 -2.39 -0.02 3.42 16 38 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.16 3.04 8.06 -2.92 -0.02 3.02 16 41 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 42 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.30 12.49 8.30 -92.71 -0.77 11.72 16 44 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 45 H 0.16 3.02 5.87 -2.91 -0.02 3.00 16 Total: -1.00 -65.85 392.48 4.63 -61.23 By element: Atomic # 1 Polarization: 56.18 SS G_CDS: 0.39 Total: 56.57 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.07 Total: 16.24 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -2.46 Total: -98.21 kcal Atomic # 8 Polarization: -67.52 SS G_CDS: -0.12 Total: -67.64 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.24 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -1.27 Total: -4.43 kcal Total: -65.85 4.63 -61.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.335 kcal (2) G-P(sol) polarization free energy of solvation -65.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds