Wall clock time and date at job start Tue Mar 31 2020 05:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30600 * 1 3 3 Si 1.86798 * 119.99919 * 2 1 4 4 H 1.48499 * 109.47057 * 239.99985 * 3 2 1 5 5 H 1.48498 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46738 * 120.00076 * 3 2 1 7 7 C 1.40214 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.40747 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21963 * 120.00239 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99760 * 179.97438 * 9 7 2 12 12 N 1.40100 * 119.99559 * 179.97438 * 11 9 7 13 13 C 1.30691 * 119.99663 * 180.02562 * 12 11 9 14 14 C 1.46727 * 119.99922 * 179.97438 * 13 12 11 15 15 C 1.40125 * 120.23395 * 179.97438 * 14 13 12 16 16 C 1.37654 * 119.86874 * 180.02562 * 15 14 13 17 17 C 1.38716 * 120.34174 * 359.97438 * 16 15 14 18 18 C 1.38174 * 120.47954 * 359.72240 * 17 16 15 19 19 C 1.38554 * 120.12065 * 0.55576 * 18 17 16 20 20 O 1.35667 * 120.17003 * 179.71837 * 19 18 17 21 21 C 1.42894 * 117.00469 * 359.73096 * 20 19 18 22 22 C 1.50703 * 109.47362 * 179.97438 * 21 20 19 23 23 C 1.38235 * 119.99838 * 89.99735 * 22 21 20 24 24 C 1.38234 * 119.99692 * 180.02562 * 23 22 21 25 25 C 1.38241 * 120.00104 * 0.02562 * 24 23 22 26 26 N 1.48020 * 120.00001 * 179.97438 * 25 24 23 27 27 O 1.21803 * 119.99894 * 359.97438 * 26 25 24 28 28 O 1.21799 * 119.99903 * 179.72763 * 26 25 24 29 29 C 1.38239 * 119.99659 * 0.25361 * 25 24 23 30 30 C 1.38231 * 120.00010 * 359.49273 * 29 25 24 31 31 H 0.96996 * 119.99955 * 359.97438 * 1 2 3 32 32 H 0.96992 * 120.00184 * 359.97438 * 11 9 7 33 33 H 1.07996 * 120.00090 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.06401 * 0.04459 * 15 14 13 35 35 H 1.07997 * 119.82571 * 179.97438 * 16 15 14 36 36 H 1.08006 * 119.75863 * 180.02562 * 17 16 15 37 37 H 1.07998 * 119.93688 * 180.27835 * 18 17 16 38 38 H 1.08999 * 109.47354 * 59.99671 * 21 20 19 39 39 H 1.09002 * 109.47071 * 299.99774 * 21 20 19 40 40 H 1.07998 * 119.99910 * 0.02562 * 23 22 21 41 41 H 1.08002 * 120.00159 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.99627 * 179.73007 * 29 25 24 43 43 H 1.08002 * 119.99557 * 180.23223 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2750 2.7464 0.0006 6 1 3.0937 1.6963 1.2125 7 6 2.0070 -1.2143 -0.0005 8 1 3.0871 -1.2143 -0.0010 9 6 1.3033 -2.4332 -0.0016 10 8 0.0836 -2.4333 -0.0016 11 7 1.9772 -3.6005 -0.0027 12 7 1.2767 -4.8137 -0.0032 13 6 1.9302 -5.9455 -0.0037 14 6 1.1966 -7.2162 -0.0037 15 6 1.8922 -8.4326 -0.0048 16 6 1.1964 -9.6203 -0.0053 17 6 -0.1908 -9.6198 -0.0043 18 6 -0.8911 -8.4287 0.0031 19 6 -0.2106 -7.2219 -0.0021 20 8 -0.8973 -6.0518 -0.0006 21 6 -2.3237 -6.1367 0.0004 22 6 -2.9096 -4.7482 0.0026 23 6 -3.1792 -4.1099 -1.1935 24 6 -3.7161 -2.8361 -1.1915 25 6 -3.9829 -2.2004 0.0067 26 7 -4.5573 -0.8362 0.0089 27 8 -4.7945 -0.2736 -1.0451 28 8 -4.7970 -0.2780 1.0646 29 6 -3.7079 -2.8365 1.2029 30 6 -3.1758 -4.1123 1.2008 31 1 -0.4850 0.8400 0.0004 32 1 2.9472 -3.6004 -0.0031 33 1 3.0101 -5.9455 -0.0033 34 1 2.9723 -8.4382 -0.0049 35 1 1.7333 -10.5574 -0.0066 36 1 -0.7272 -10.5572 -0.0043 37 1 -1.9711 -8.4385 0.0084 38 1 -2.6552 -6.6719 0.8902 39 1 -2.6566 -6.6705 -0.8897 40 1 -2.9704 -4.6065 -2.1296 41 1 -3.9264 -2.3372 -2.1260 42 1 -3.9122 -2.3381 2.1389 43 1 -2.9645 -4.6107 2.1353 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000567443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:30 Heat of formation + Delta-G solvation = 28.491261 kcal Electronic energy + Delta-G solvation = -32799.141236 eV Core-core repulsion = 28200.722938 eV Total energy + Delta-G solvation = -4598.418298 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.120 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.75189 -40.18161 -39.10515 -37.55803 -37.17366 -36.14833 -35.15399 -32.81578 -32.58823 -31.82846 -31.14930 -30.13805 -29.16456 -27.78866 -26.51234 -24.87197 -23.52413 -22.97317 -22.31007 -21.21729 -20.65340 -19.69899 -19.00967 -18.28949 -18.09906 -17.43054 -17.09187 -16.58331 -15.98923 -15.91707 -15.64729 -15.41743 -14.90865 -14.66863 -14.59600 -14.15474 -14.02739 -13.61865 -13.23209 -13.23087 -13.07810 -12.72293 -12.61610 -12.60746 -11.85947 -11.54559 -11.40723 -11.38368 -11.31219 -11.17681 -10.97637 -10.88078 -10.86169 -10.76717 -10.73141 -10.62171 -10.39668 -9.41539 -9.16797 -9.15712 -9.04278 -8.88037 -8.26335 -7.71446 -7.15806 -6.38646 -4.93366 0.18574 1.06411 1.29494 1.49247 1.65381 1.84830 2.88827 3.07873 3.11468 3.15028 3.19749 3.73828 3.86361 3.97407 4.11201 4.47015 4.52193 4.56126 4.74208 4.80060 4.90458 4.90808 5.01149 5.10158 5.26307 5.29650 5.39756 5.44412 5.50478 5.65248 5.77426 5.79034 5.85620 5.99671 6.02472 6.05892 6.22475 6.36371 6.42545 6.49308 6.52793 6.71494 6.85047 6.85668 7.20524 7.58603 7.85302 7.99137 8.07328 8.72785 8.78088 9.31888 10.39376 10.67241 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.007151 B = 0.003975 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3914.353257 B = 7042.587887 C =10534.200849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.092 3.908 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.558 3.442 10 O -0.545 6.545 11 N -0.591 5.591 12 N -0.155 5.155 13 C 0.002 3.998 14 C -0.049 4.049 15 C -0.071 4.071 16 C -0.161 4.161 17 C -0.085 4.085 18 C -0.216 4.216 19 C 0.147 3.853 20 O -0.256 6.256 21 C 0.093 3.907 22 C -0.032 4.032 23 C -0.086 4.086 24 C -0.047 4.047 25 C -0.022 4.022 26 N 0.037 4.963 27 O -0.167 6.167 28 O -0.167 6.167 29 C -0.046 4.046 30 C -0.086 4.086 31 H 0.273 0.727 32 H 0.365 0.635 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 -16.870 0.001 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.132 4.132 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.367 3.633 10 O -0.424 6.424 11 N -0.337 5.337 12 N 0.034 4.966 13 C -0.206 4.206 14 C -0.051 4.051 15 C -0.092 4.092 16 C -0.180 4.180 17 C -0.104 4.104 18 C -0.235 4.235 19 C 0.098 3.902 20 O -0.166 6.166 21 C 0.018 3.982 22 C -0.032 4.032 23 C -0.104 4.104 24 C -0.066 4.066 25 C -0.104 4.104 26 N 0.555 4.445 27 O -0.383 6.383 28 O -0.383 6.383 29 C -0.066 4.066 30 C -0.104 4.104 31 H 0.084 0.916 32 H 0.200 0.800 33 H 0.122 0.878 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.002 -16.516 0.001 17.257 hybrid contribution 1.898 0.852 0.000 2.080 sum -3.104 -15.665 0.000 15.969 Atomic orbital electron populations 1.69963 1.07255 1.28020 1.31777 1.25695 0.94624 1.00463 0.92435 0.86349 0.79888 0.80512 0.79664 1.19032 1.20174 1.19037 1.19716 0.94290 0.89765 1.53742 0.91448 1.16741 0.87943 0.80222 0.78433 1.90703 1.13099 1.85193 1.53379 1.48226 1.07307 1.02286 1.75883 1.75106 1.26597 0.92463 1.02450 1.23787 0.96303 0.90752 1.09765 1.17933 0.89132 0.92140 1.05944 1.21016 0.99609 0.90418 0.98184 1.20855 0.94120 0.97718 1.05278 1.20957 0.94212 0.97109 0.98136 1.21159 1.00034 0.92113 1.10159 1.19340 0.91189 0.85027 0.94637 1.86619 1.16973 1.26270 1.86771 1.21620 0.80861 0.93704 1.02055 1.19677 0.94818 0.95126 0.93577 1.20888 0.97488 0.93688 0.98362 1.20867 0.94418 0.94340 0.96970 1.20994 1.08720 0.83628 0.97106 1.43551 0.97922 1.02775 1.00208 1.94495 1.56088 1.66742 1.20969 1.94494 1.56005 1.67083 1.20721 1.20864 0.94373 0.94309 0.97014 1.20888 0.97550 0.93670 0.98342 0.91598 0.79976 0.87813 0.85248 0.86042 0.86194 0.85632 0.90962 0.90955 0.84169 0.83366 0.83368 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.77 11.71 55.56 0.65 -21.12 16 2 C 0.09 2.49 5.50 -17.33 -0.10 2.40 16 3 Si 0.91 19.86 29.56 -169.99 -5.02 14.84 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -14.84 9.26 -37.89 -0.35 -15.19 16 8 H 0.07 1.68 7.85 -52.48 -0.41 1.27 16 9 C 0.56 15.86 7.66 -15.31 -0.12 15.75 16 10 O -0.54 -17.18 15.20 4.95 0.08 -17.11 16 11 N -0.59 -13.98 6.26 28.93 0.18 -13.80 16 12 N -0.16 -3.41 8.93 32.13 0.29 -3.13 16 13 C 0.00 0.04 10.76 -14.61 -0.16 -0.12 16 14 C -0.05 -0.73 5.89 -104.83 -0.62 -1.34 16 15 C -0.07 -0.81 9.80 -39.09 -0.38 -1.20 16 16 C -0.16 -1.59 10.02 -39.62 -0.40 -1.99 16 17 C -0.08 -0.84 10.04 -39.43 -0.40 -1.23 16 18 C -0.22 -2.48 9.03 -39.49 -0.36 -2.83 16 19 C 0.15 2.20 6.71 -38.53 -0.26 1.94 16 20 O -0.26 -4.38 7.99 -18.70 -0.15 -4.53 16 21 C 0.09 1.19 4.86 36.01 0.18 1.37 16 22 C -0.03 -0.48 5.51 -104.62 -0.58 -1.05 16 23 C -0.09 -1.31 9.70 -39.58 -0.38 -1.70 16 24 C -0.05 -0.79 9.56 -39.58 -0.38 -1.17 16 25 C -0.02 -0.40 6.85 -79.94 -0.55 -0.95 16 26 N 0.04 0.74 4.45 33.96 0.15 0.89 16 27 O -0.17 -3.40 18.45 -29.46 -0.54 -3.94 16 28 O -0.17 -3.40 18.45 -29.46 -0.54 -3.94 16 29 C -0.05 -0.79 9.56 -39.58 -0.38 -1.17 16 30 C -0.09 -1.32 9.70 -39.59 -0.38 -1.70 16 31 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 32 H 0.37 7.38 8.61 -182.60 -1.57 5.81 16 33 H 0.10 1.50 8.03 -52.49 -0.42 1.08 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 38 H 0.07 0.74 7.59 -51.93 -0.39 0.34 16 39 H 0.07 0.74 7.62 -51.93 -0.40 0.34 16 40 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.15 2.30 7.61 -52.49 -0.40 1.90 16 42 H 0.15 2.30 7.61 -52.49 -0.40 1.90 16 43 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -36.98 392.54 -10.18 -47.15 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.57 Total: 8.97 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -5.60 Total: -10.19 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.27 Total: -37.16 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.16 Total: -29.52 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.98 -10.18 -47.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.644 kcal (2) G-P(sol) polarization free energy of solvation -36.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds