Wall clock time and date at job start Tue Mar 31 2020 05:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30600 * 1 3 3 Si 1.86798 * 119.99919 * 2 1 4 4 H 1.48499 * 109.47057 * 239.99985 * 3 2 1 5 5 H 1.48498 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46738 * 120.00076 * 3 2 1 7 7 C 1.40214 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.40747 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21963 * 120.00239 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99760 * 179.97438 * 9 7 2 12 12 N 1.40100 * 119.99559 * 179.97438 * 11 9 7 13 13 C 1.30691 * 119.99663 * 180.02562 * 12 11 9 14 14 C 1.46727 * 119.99922 * 179.97438 * 13 12 11 15 15 C 1.40125 * 120.23395 * 179.97438 * 14 13 12 16 16 C 1.37654 * 119.86874 * 180.02562 * 15 14 13 17 17 C 1.38716 * 120.34174 * 359.97438 * 16 15 14 18 18 C 1.38174 * 120.47954 * 359.72240 * 17 16 15 19 19 C 1.38554 * 120.12065 * 0.55576 * 18 17 16 20 20 O 1.35667 * 120.17003 * 179.71837 * 19 18 17 21 21 C 1.42894 * 117.00469 * 359.73096 * 20 19 18 22 22 C 1.50703 * 109.47362 * 179.97438 * 21 20 19 23 23 C 1.38235 * 119.99838 * 89.99735 * 22 21 20 24 24 C 1.38234 * 119.99692 * 180.02562 * 23 22 21 25 25 C 1.38241 * 120.00104 * 0.02562 * 24 23 22 26 26 N 1.48020 * 120.00001 * 179.97438 * 25 24 23 27 27 O 1.21803 * 119.99894 * 359.97438 * 26 25 24 28 28 O 1.21799 * 119.99903 * 179.72763 * 26 25 24 29 29 C 1.38239 * 119.99659 * 0.25361 * 25 24 23 30 30 C 1.38231 * 120.00010 * 359.49273 * 29 25 24 31 31 H 0.96996 * 119.99955 * 359.97438 * 1 2 3 32 32 H 0.96992 * 120.00184 * 359.97438 * 11 9 7 33 33 H 1.07996 * 120.00090 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.06401 * 0.04459 * 15 14 13 35 35 H 1.07997 * 119.82571 * 179.97438 * 16 15 14 36 36 H 1.08006 * 119.75863 * 180.02562 * 17 16 15 37 37 H 1.07998 * 119.93688 * 180.27835 * 18 17 16 38 38 H 1.08999 * 109.47354 * 59.99671 * 21 20 19 39 39 H 1.09002 * 109.47071 * 299.99774 * 21 20 19 40 40 H 1.07998 * 119.99910 * 0.02562 * 23 22 21 41 41 H 1.08002 * 120.00159 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.99627 * 179.73007 * 29 25 24 43 43 H 1.08002 * 119.99557 * 180.23223 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2750 2.7464 0.0006 6 1 3.0937 1.6963 1.2125 7 6 2.0070 -1.2143 -0.0005 8 1 3.0871 -1.2143 -0.0010 9 6 1.3033 -2.4332 -0.0016 10 8 0.0836 -2.4333 -0.0016 11 7 1.9772 -3.6005 -0.0027 12 7 1.2767 -4.8137 -0.0032 13 6 1.9302 -5.9455 -0.0037 14 6 1.1966 -7.2162 -0.0037 15 6 1.8922 -8.4326 -0.0048 16 6 1.1964 -9.6203 -0.0053 17 6 -0.1908 -9.6198 -0.0043 18 6 -0.8911 -8.4287 0.0031 19 6 -0.2106 -7.2219 -0.0021 20 8 -0.8973 -6.0518 -0.0006 21 6 -2.3237 -6.1367 0.0004 22 6 -2.9096 -4.7482 0.0026 23 6 -3.1792 -4.1099 -1.1935 24 6 -3.7161 -2.8361 -1.1915 25 6 -3.9829 -2.2004 0.0067 26 7 -4.5573 -0.8362 0.0089 27 8 -4.7945 -0.2736 -1.0451 28 8 -4.7970 -0.2780 1.0646 29 6 -3.7079 -2.8365 1.2029 30 6 -3.1758 -4.1123 1.2008 31 1 -0.4850 0.8400 0.0004 32 1 2.9472 -3.6004 -0.0031 33 1 3.0101 -5.9455 -0.0033 34 1 2.9723 -8.4382 -0.0049 35 1 1.7333 -10.5574 -0.0066 36 1 -0.7272 -10.5572 -0.0043 37 1 -1.9711 -8.4385 0.0084 38 1 -2.6552 -6.6719 0.8902 39 1 -2.6566 -6.6705 -0.8897 40 1 -2.9704 -4.6065 -2.1296 41 1 -3.9264 -2.3372 -2.1260 42 1 -3.9122 -2.3381 2.1389 43 1 -2.9645 -4.6107 2.1353 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000567443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:29 Heat of formation + Delta-G solvation = 5.286009 kcal Electronic energy + Delta-G solvation = -32800.147491 eV Core-core repulsion = 28200.722938 eV Total energy + Delta-G solvation = -4599.424553 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.120 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.29338 -41.23370 -40.30270 -39.42746 -38.21913 -37.73165 -36.78876 -34.69870 -33.96173 -33.26450 -32.41378 -31.22559 -30.49102 -29.06295 -28.38010 -26.15861 -24.76346 -24.24145 -23.42660 -22.48181 -22.08091 -21.26598 -20.43751 -19.86039 -19.54454 -18.78403 -18.66037 -17.92628 -17.59724 -17.14705 -17.10654 -16.59052 -15.99598 -15.87300 -15.83850 -15.69614 -15.10505 -15.02735 -14.84260 -14.61339 -14.28557 -14.21199 -13.86986 -13.74399 -13.30232 -12.96863 -12.89165 -12.80771 -12.69352 -12.59988 -12.45544 -12.38863 -12.35318 -12.28086 -12.13662 -11.87724 -11.82940 -11.00061 -10.81733 -10.44791 -10.31568 -10.22325 -9.83993 -9.33547 -8.61126 -8.41354 -7.05349 -1.25382 0.02949 0.05836 0.21864 0.41197 0.61558 1.33408 1.34912 1.49312 1.67866 2.01789 2.09252 2.40275 2.45687 2.74979 3.03226 3.34969 3.43974 3.54344 3.72322 3.76524 3.80869 3.94089 4.05590 4.16321 4.23641 4.26771 4.28972 4.43186 4.52305 4.65209 4.70580 4.73818 4.74516 4.77546 5.06006 5.14412 5.14545 5.14676 5.17226 5.48184 5.50366 5.59444 5.68242 5.83556 5.98447 6.06115 6.49515 6.61210 6.69760 7.06802 7.53283 8.39738 8.66668 Molecular weight = 369.12amu Principal moments of inertia in cm(-1) A = 0.007151 B = 0.003975 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3914.353257 B = 7042.587887 C =10534.200849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.039 3.961 3 Si 0.994 3.006 4 H -0.251 1.251 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.548 3.452 10 O -0.591 6.591 11 N -0.602 5.602 12 N -0.223 5.223 13 C 0.048 3.952 14 C -0.100 4.100 15 C -0.058 4.058 16 C -0.160 4.160 17 C -0.069 4.069 18 C -0.220 4.220 19 C 0.130 3.870 20 O -0.296 6.296 21 C 0.090 3.910 22 C -0.031 4.031 23 C -0.090 4.090 24 C -0.060 4.060 25 C -0.049 4.049 26 N 0.036 4.964 27 O -0.183 6.183 28 O -0.183 6.183 29 C -0.060 4.060 30 C -0.090 4.090 31 H 0.272 0.728 32 H 0.376 0.624 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 -20.952 -0.001 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.180 4.180 3 Si 0.813 3.187 4 H -0.175 1.175 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.602 4.602 8 H 0.104 0.896 9 C 0.356 3.644 10 O -0.474 6.474 11 N -0.348 5.348 12 N -0.031 5.031 13 C -0.162 4.162 14 C -0.103 4.103 15 C -0.078 4.078 16 C -0.178 4.178 17 C -0.088 4.088 18 C -0.238 4.238 19 C 0.081 3.919 20 O -0.208 6.208 21 C 0.015 3.985 22 C -0.031 4.031 23 C -0.109 4.109 24 C -0.079 4.079 25 C -0.132 4.132 26 N 0.551 4.449 27 O -0.397 6.397 28 O -0.396 6.396 29 C -0.079 4.079 30 C -0.109 4.109 31 H 0.082 0.918 32 H 0.213 0.787 33 H 0.147 0.853 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.048 -20.634 -0.001 20.858 hybrid contribution 1.390 1.555 0.000 2.086 sum -1.658 -19.079 -0.001 19.151 Atomic orbital electron populations 1.70159 1.09537 1.28866 1.33550 1.26896 0.95369 1.04699 0.91012 0.85119 0.78344 0.74656 0.80604 1.17479 1.20147 1.17489 1.20221 0.95355 0.90414 1.54180 0.89568 1.16995 0.87649 0.81861 0.77857 1.90647 1.14841 1.86523 1.55419 1.47504 1.07468 1.02574 1.77216 1.75246 1.27028 0.92538 1.08295 1.24560 0.97994 0.90711 1.02931 1.18198 0.89747 0.92038 1.10335 1.21365 1.00935 0.89584 0.95956 1.21321 0.94455 0.98407 1.03645 1.21495 0.94584 0.97888 0.94796 1.21456 1.01366 0.91332 1.09656 1.19687 0.91422 0.85544 0.95245 1.86559 1.18719 1.28221 1.87333 1.21854 0.79431 0.92339 1.04859 1.20098 0.93455 0.96419 0.93142 1.21265 0.96651 0.93122 0.99837 1.21124 0.94807 0.95233 0.96775 1.21275 1.10526 0.82913 0.98477 1.43825 0.97667 1.03469 0.99922 1.94459 1.56739 1.67399 1.21072 1.94457 1.56632 1.67734 1.20823 1.21123 0.94769 0.95213 0.96824 1.21264 0.96707 0.93096 0.99813 0.91838 0.78733 0.85316 0.82854 0.82581 0.82619 0.83333 0.88087 0.88087 0.81744 0.82817 0.82827 0.81741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.85 11.71 21.87 0.26 -48.59 16 2 C 0.04 2.18 5.50 85.36 0.47 2.65 16 3 Si 0.99 41.46 29.56 68.60 2.03 43.49 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.57 -32.11 9.26 23.36 0.22 -31.90 16 8 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.55 32.59 7.66 84.85 0.65 33.24 16 10 O -0.59 -39.39 15.20 -5.20 -0.08 -39.47 16 11 N -0.60 -29.47 6.26 -180.47 -1.13 -30.60 16 12 N -0.22 -10.03 8.93 -52.27 -0.47 -10.50 16 13 C 0.05 1.60 10.76 87.08 0.94 2.54 16 14 C -0.10 -2.77 5.89 -20.00 -0.12 -2.89 16 15 C -0.06 -1.08 9.80 22.59 0.22 -0.86 16 16 C -0.16 -2.25 10.02 22.25 0.22 -2.03 16 17 C -0.07 -0.97 10.04 22.37 0.22 -0.74 16 18 C -0.22 -4.13 9.03 22.33 0.20 -3.93 16 19 C 0.13 3.59 6.71 22.95 0.15 3.74 16 20 O -0.30 -9.95 7.99 -89.83 -0.72 -10.67 16 21 C 0.09 2.14 4.86 71.24 0.35 2.49 16 22 C -0.03 -0.93 5.51 -19.87 -0.11 -1.04 16 23 C -0.09 -2.84 9.70 22.27 0.22 -2.62 16 24 C -0.06 -2.17 9.56 22.27 0.21 -1.96 16 25 C -0.05 -1.94 6.85 36.38 0.25 -1.69 16 26 N 0.04 1.58 4.45 -46.46 -0.21 1.37 16 27 O -0.18 -7.98 18.45 18.88 0.35 -7.63 16 28 O -0.18 -7.96 18.45 18.89 0.35 -7.61 16 29 C -0.06 -2.17 9.56 22.27 0.21 -1.96 16 30 C -0.09 -2.84 9.70 22.27 0.22 -2.62 16 31 H 0.27 15.70 8.29 -92.71 -0.77 14.93 16 32 H 0.38 15.60 8.61 -213.33 -1.84 13.77 16 33 H 0.13 3.48 8.03 -2.91 -0.02 3.46 16 34 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.15 2.01 6.30 -2.91 -0.02 2.00 16 38 H 0.10 1.77 7.59 -2.39 -0.02 1.75 16 39 H 0.10 1.77 7.62 -2.39 -0.02 1.75 16 40 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.15 5.14 7.61 -2.91 -0.02 5.12 16 42 H 0.15 5.15 7.61 -2.91 -0.02 5.12 16 43 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -87.98 392.54 4.16 -83.83 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.75 Total: 35.96 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 4.52 Total: -9.57 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -1.55 Total: -88.32 kcal Atomic # 8 Polarization: -65.28 SS G_CDS: -0.10 Total: -65.38 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -87.98 4.16 -83.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.113 kcal (2) G-P(sol) polarization free energy of solvation -87.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds