Wall clock time and date at job start Tue Mar 31 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34743 * 117.00079 * 2 1 4 4 O 1.21498 * 119.99830 * 0.02562 * 3 2 1 5 5 C 1.47452 * 120.00035 * 180.02562 * 3 2 1 6 6 C 1.39698 * 120.19749 * 0.02660 * 5 3 2 7 7 C 1.37829 * 119.91579 * 179.97438 * 6 5 3 8 8 C 1.38548 * 120.32315 * 0.02562 * 7 6 5 9 9 C 1.38065 * 120.40685 * 359.67440 * 8 7 6 10 10 C 1.38803 * 120.07341 * 0.60413 * 9 8 7 11 11 N 1.39531 * 120.16225 * 179.69760 * 10 9 8 12 12 C 1.37049 * 124.90563 * 89.74796 * 11 10 9 13 13 C 1.50704 * 125.33954 * 359.97438 * 12 11 10 14 14 C 1.34422 * 109.31284 * 179.97438 * 12 11 10 15 15 C 1.46728 * 106.64433 * 359.97438 * 14 12 11 16 16 C 1.46343 * 127.03187 * 180.02562 * 15 14 12 17 17 N 1.31005 * 120.00017 * 179.97438 * 16 15 14 18 18 N 1.40099 * 119.99703 * 180.02562 * 17 16 15 19 19 C 1.34773 * 120.00185 * 180.02562 * 18 17 16 20 20 O 1.22066 * 119.99805 * 359.97438 * 19 18 17 21 21 C 1.40105 * 120.00512 * 180.02562 * 19 18 17 22 22 H 1.07999 * 119.99579 * 353.69404 * 21 19 18 23 23 C 1.40123 * 120.00290 * 173.68568 * 21 19 18 24 24 N 1.30656 * 119.99872 * 6.30066 * 23 21 19 25 25 Si 1.86801 * 119.99989 * 186.29676 * 23 21 19 26 26 H 1.48500 * 109.46877 * 94.98989 * 25 23 21 27 27 H 1.48500 * 109.47186 * 214.98897 * 25 23 21 28 28 H 1.48499 * 109.47081 * 334.99092 * 25 23 21 29 29 C 1.35486 * 124.90281 * 269.44483 * 11 10 9 30 30 C 1.50699 * 126.04395 * 359.97438 * 29 11 10 31 31 H 1.09003 * 109.46377 * 299.99129 * 1 2 3 32 32 H 1.08993 * 109.47358 * 59.99672 * 1 2 3 33 33 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 34 34 H 1.08006 * 120.04595 * 359.95800 * 6 5 3 35 35 H 1.07995 * 119.84274 * 179.97438 * 7 6 5 36 36 H 1.08003 * 119.79963 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.96690 * 180.30165 * 9 8 7 38 38 H 1.09002 * 109.46851 * 90.00269 * 13 12 11 39 39 H 1.08998 * 109.47072 * 209.99962 * 13 12 11 40 40 H 1.08997 * 109.47577 * 330.00547 * 13 12 11 41 41 H 1.07999 * 126.68154 * 179.97438 * 14 12 11 42 42 H 1.07998 * 119.99276 * 359.97438 * 16 15 14 43 43 H 0.97000 * 120.00092 * 0.02562 * 18 17 16 44 44 H 0.96996 * 119.99510 * 179.97438 * 24 23 21 45 45 H 1.09006 * 109.47314 * 90.00509 * 30 29 11 46 46 H 1.09004 * 109.47314 * 209.99528 * 30 29 11 47 47 H 1.08996 * 109.47413 * 329.99963 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2195 0.0005 5 6 3.5363 1.2777 -0.0006 6 6 4.3011 0.1087 -0.0017 7 6 5.6772 0.1876 -0.0027 8 6 6.3071 1.4216 -0.0022 9 6 5.5642 2.5854 -0.0073 10 6 4.1775 2.5254 -0.0004 11 7 3.4250 3.7004 0.0007 12 6 3.0007 4.3611 -1.1225 13 6 3.2742 3.9328 -2.5413 14 6 2.3023 5.4510 -0.7601 15 6 2.2887 5.4728 0.7070 16 6 1.6498 6.4690 1.5677 17 7 1.7239 6.3530 2.8705 18 7 1.1118 7.3065 3.6945 19 6 1.1883 7.1876 5.0348 20 8 1.7906 6.2488 5.5308 21 6 0.5758 8.1408 5.8589 22 1 0.1305 9.0237 5.4246 23 6 0.5408 7.9486 7.2465 24 7 1.1843 6.9463 7.7835 25 14 -0.4257 9.1254 8.3283 26 1 -1.7816 8.5718 8.5738 27 1 0.2797 9.3000 9.6234 28 1 -0.5436 10.4400 7.6477 29 6 3.0032 4.3498 1.1125 30 6 3.2634 3.9308 2.5365 31 1 -0.3632 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.8149 -0.8557 -0.0014 35 1 6.2673 -0.7168 -0.0032 36 1 7.3858 1.4736 -0.0026 37 1 6.0626 3.5435 -0.0118 38 1 2.4749 3.2750 -2.8827 39 1 3.3204 4.8121 -3.1837 40 1 4.2250 3.4015 -2.5836 41 1 1.8411 6.1706 -1.4202 42 1 1.1173 7.2998 1.1288 43 1 0.6329 8.0523 3.3004 44 1 1.1603 6.8135 8.7441 45 1 4.1917 4.3838 2.8848 46 1 2.4389 4.2605 3.1688 47 1 3.3478 2.8452 2.5863 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000573903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:36 Heat of formation + Delta-G solvation = 9.077591 kcal Electronic energy + Delta-G solvation = -33043.451261 eV Core-core repulsion = 28580.024218 eV Total energy + Delta-G solvation = -4463.427043 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.63226 -40.22080 -38.83248 -37.36432 -36.50355 -35.04250 -33.14503 -32.60095 -32.22623 -32.01241 -30.37377 -28.82514 -28.76828 -27.83336 -26.54065 -24.43255 -24.12050 -23.32474 -21.84366 -21.20137 -19.87149 -19.77070 -18.62170 -18.12832 -17.22574 -16.97182 -16.66076 -16.48618 -15.87041 -15.57784 -15.38949 -15.37738 -14.70936 -14.13695 -14.08947 -13.89045 -13.69499 -13.45030 -13.20929 -13.07221 -12.84803 -12.83042 -12.65491 -12.53131 -12.45262 -12.21593 -11.98209 -11.93138 -11.78128 -11.56011 -11.34253 -11.24497 -11.05517 -10.94235 -10.78180 -10.52772 -10.46953 -10.27972 -9.53500 -9.39887 -9.06376 -8.94837 -8.44991 -7.72784 -7.59600 -6.70026 -6.29833 -4.82772 0.22400 0.74677 2.17618 2.31467 2.42200 2.64480 2.94402 3.10079 3.16685 3.20811 3.26363 3.93010 3.95520 4.28659 4.31586 4.40877 4.51550 4.56763 4.73773 4.83294 4.89650 4.94617 5.03277 5.12240 5.22881 5.34245 5.40424 5.46562 5.49994 5.53824 5.69000 5.78164 5.81364 5.82997 5.89797 5.91882 5.99430 6.16222 6.19947 6.23838 6.25801 6.33326 6.67255 6.86211 7.03693 7.30948 7.36541 7.52344 7.58510 7.75280 8.02453 8.15490 8.87117 9.00268 9.51576 10.49827 10.82734 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.002267 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.518359 B =12347.415192 C =12557.613696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.492 3.508 4 O -0.462 6.462 5 C -0.116 4.116 6 C -0.058 4.058 7 C -0.124 4.124 8 C -0.076 4.076 9 C -0.117 4.117 10 C 0.185 3.815 11 N -0.405 5.405 12 C 0.020 3.980 13 C -0.079 4.079 14 C -0.161 4.161 15 C -0.118 4.118 16 C 0.073 3.927 17 N -0.214 5.214 18 N -0.598 5.598 19 C 0.563 3.437 20 O -0.559 6.559 21 C -0.539 4.539 22 H 0.069 0.931 23 C 0.089 3.911 24 N -0.746 5.746 25 Si 0.914 3.086 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.263 1.263 29 C 0.090 3.910 30 C -0.084 4.084 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.365 0.635 44 H 0.272 0.728 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -14.740 -21.243 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.278 6.278 3 C 0.334 3.666 4 O -0.347 6.347 5 C -0.118 4.118 6 C -0.077 4.077 7 C -0.142 4.142 8 C -0.095 4.095 9 C -0.136 4.136 10 C 0.095 3.905 11 N -0.082 5.082 12 C -0.085 4.085 13 C -0.136 4.136 14 C -0.187 4.187 15 C -0.127 4.127 16 C -0.136 4.136 17 N -0.022 5.022 18 N -0.343 5.343 19 C 0.371 3.629 20 O -0.440 6.440 21 C -0.576 4.576 22 H 0.087 0.913 23 C -0.134 4.134 24 N -0.373 5.373 25 Si 0.738 3.262 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.187 1.187 29 C -0.023 4.023 30 C -0.141 4.141 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.157 0.843 42 H 0.118 0.882 43 H 0.200 0.800 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.129 0.871 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.620 -15.876 -19.796 26.495 hybrid contribution -1.437 1.583 -0.267 2.155 sum 6.183 -14.293 -20.063 25.398 Atomic orbital electron populations 1.23276 0.75620 1.03618 1.02976 1.86491 1.23806 1.32614 1.84843 1.20968 0.88813 0.82040 0.74738 1.91025 1.66151 1.35130 1.42382 1.19414 0.90143 0.93834 1.08433 1.21448 0.93897 0.97598 0.94752 1.21284 0.94256 0.98417 1.00275 1.21371 1.00723 0.91645 0.95727 1.21388 0.91652 1.00224 1.00296 1.17551 0.90306 0.84336 0.98327 1.40669 1.43010 1.18350 1.06200 1.19917 1.05303 0.95877 0.87377 1.20242 1.01098 1.01794 0.90492 1.21484 1.04855 0.99163 0.93177 1.18834 1.06003 0.96424 0.91388 1.23190 1.02082 0.98149 0.90220 1.74968 1.10297 1.13170 1.03812 1.47893 1.55358 1.24226 1.06821 1.16522 0.81758 0.87420 0.77156 1.90720 1.45770 1.35582 1.71901 1.19626 1.38887 1.07465 0.91644 0.91285 1.25739 0.94046 0.95271 0.98329 1.70060 1.30289 1.24980 1.11988 0.86251 0.79855 0.80875 0.79194 1.19585 1.20220 1.18671 1.21116 1.00079 0.93397 0.87744 1.20468 1.04914 0.99065 0.89655 0.91516 0.91826 0.88021 0.83749 0.84455 0.84383 0.84146 0.91860 0.90330 0.92488 0.84264 0.88185 0.80032 0.91718 0.91120 0.87051 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.43 16 2 O -0.36 -4.14 9.82 -40.61 -0.40 -4.54 16 3 C 0.49 6.81 7.89 34.48 0.27 7.08 16 4 O -0.46 -7.90 13.46 -19.26 -0.26 -8.16 16 5 C -0.12 -1.39 5.89 -104.83 -0.62 -2.00 16 6 C -0.06 -0.49 9.61 -39.19 -0.38 -0.87 16 7 C -0.12 -0.81 10.02 -39.62 -0.40 -1.20 16 8 C -0.08 -0.53 10.03 -39.53 -0.40 -0.93 16 9 C -0.12 -1.15 9.96 -39.44 -0.39 -1.54 16 10 C 0.19 2.35 4.25 -83.38 -0.35 2.00 16 11 N -0.41 -6.20 1.43 -51.53 -0.07 -6.27 16 12 C 0.02 0.29 5.96 -81.61 -0.49 -0.19 16 13 C -0.08 -0.82 10.03 36.01 0.36 -0.46 16 14 C -0.16 -2.51 10.98 -37.50 -0.41 -2.92 16 15 C -0.12 -2.22 6.34 -102.87 -0.65 -2.87 16 16 C 0.07 1.47 11.05 -14.65 -0.16 1.31 16 17 N -0.21 -5.19 8.64 32.09 0.28 -4.92 16 18 N -0.60 -15.30 6.26 28.81 0.18 -15.12 16 19 C 0.56 17.06 7.63 -15.56 -0.12 16.94 16 20 O -0.56 -19.15 15.21 4.86 0.07 -19.07 16 21 C -0.54 -15.53 9.22 -38.17 -0.35 -15.88 16 22 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 23 C 0.09 2.50 5.49 -17.34 -0.10 2.41 16 24 N -0.75 -22.41 11.72 55.55 0.65 -21.76 16 25 Si 0.91 20.03 29.56 -169.99 -5.03 15.01 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 29 C 0.09 1.65 6.07 -80.64 -0.49 1.16 16 30 C -0.08 -1.62 9.49 36.01 0.34 -1.28 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.14 0.97 7.61 -52.48 -0.40 0.57 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.54 7.76 -51.93 -0.40 0.13 16 41 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.10 1.75 8.04 -52.49 -0.42 1.33 16 43 H 0.36 8.02 8.62 -182.60 -1.57 6.45 16 44 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.11 2.61 6.35 -51.93 -0.33 2.28 16 47 H 0.04 0.79 7.78 -51.93 -0.40 0.39 16 LS Contribution 411.25 15.07 6.20 6.20 Total: -1.00 -39.57 411.25 -8.94 -48.51 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.30 Total: 7.95 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -3.26 Total: 2.18 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 1.04 Total: -48.07 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.58 Total: -31.77 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -39.57 -8.94 -48.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000573903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.587 kcal (2) G-P(sol) polarization free energy of solvation -39.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds