Wall clock time and date at job start Tue Mar 31 2020 05:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00239 * 2 1 4 4 H 1.48502 * 109.47334 * 269.99936 * 3 2 1 5 5 H 1.48494 * 109.47396 * 30.00187 * 3 2 1 6 6 H 1.48503 * 109.47358 * 150.00111 * 3 2 1 7 7 C 1.37881 * 119.99333 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99176 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00389 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47422 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.47031 * 59.99818 * 9 7 2 12 12 C 1.34775 * 119.99916 * 85.00020 * 11 9 7 13 13 O 1.21524 * 120.00023 * 0.02562 * 12 11 9 14 14 O 1.34635 * 120.00295 * 180.02562 * 12 11 9 15 15 C 1.45199 * 117.00388 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47134 * 180.02562 * 15 14 12 17 17 C 1.38240 * 119.99409 * 269.72089 * 16 15 14 18 18 C 1.38241 * 119.99545 * 179.77015 * 17 16 15 19 19 C 1.38233 * 119.99875 * 0.50400 * 18 17 16 20 20 C 1.38234 * 120.00323 * 359.74893 * 19 18 17 21 21 C 1.38229 * 120.00470 * 89.99719 * 16 15 14 22 22 C 1.50696 * 109.47069 * 300.00044 * 9 7 2 23 23 O 1.20825 * 119.99897 * 119.99962 * 22 9 7 24 24 O 1.34227 * 119.99883 * 299.99710 * 22 9 7 25 25 C 1.45205 * 116.99929 * 180.02562 * 24 22 9 26 26 C 1.50701 * 109.46997 * 180.02562 * 25 24 22 27 27 C 1.38235 * 119.99808 * 89.99829 * 26 25 24 28 28 C 1.38243 * 119.99602 * 179.97438 * 27 26 25 29 29 C 1.38231 * 120.00070 * 0.07188 * 28 27 26 30 30 C 1.38234 * 119.99892 * 359.90902 * 29 28 27 31 31 C 1.38230 * 119.99865 * 269.97574 * 26 25 24 32 32 H 0.97001 * 119.99558 * 359.97438 * 1 2 3 33 33 H 0.96989 * 119.99979 * 264.99744 * 11 9 7 34 34 H 1.09006 * 109.46277 * 299.99569 * 15 14 12 35 35 H 1.08998 * 109.47401 * 59.99503 * 15 14 12 36 36 H 1.08002 * 120.00056 * 359.97438 * 17 16 15 37 37 H 1.07995 * 119.99769 * 180.23358 * 18 17 16 38 38 H 1.08003 * 119.99975 * 179.73135 * 19 18 17 39 39 H 1.07999 * 120.00230 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.00159 * 359.97438 * 21 16 15 41 41 H 1.08993 * 109.47592 * 59.99660 * 25 24 22 42 42 H 1.09001 * 109.46728 * 299.99506 * 25 24 22 43 43 H 1.08000 * 120.00616 * 359.70324 * 27 26 25 44 44 H 1.08001 * 119.99556 * 179.97438 * 28 27 26 45 45 H 1.07997 * 119.99633 * 179.97438 * 29 28 27 46 46 H 1.07999 * 119.99751 * 180.02562 * 30 29 28 47 47 H 1.08001 * 120.00371 * 0.02562 * 31 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 1.9592 -3.3278 0.0005 11 7 0.4091 -2.5770 -1.1960 12 6 0.9274 -3.0249 -2.3567 13 8 2.0929 -3.3646 -2.4106 14 8 0.1540 -3.0959 -3.4564 15 6 0.7787 -3.5883 -4.6711 16 6 -0.2326 -3.5966 -5.7883 17 6 -1.0057 -4.7206 -6.0123 18 6 -1.9367 -4.7266 -7.0341 19 6 -2.0873 -3.6125 -7.8385 20 6 -1.3106 -2.4905 -7.6178 21 6 -0.3832 -2.4826 -6.5927 22 6 0.3841 -2.5787 1.2306 23 8 -0.8140 -2.6890 1.1193 24 8 0.9429 -2.5269 2.4499 25 6 0.0471 -2.6097 3.5897 26 6 0.8476 -2.5350 4.8643 27 6 1.1042 -1.3087 5.4484 28 6 1.8381 -1.2402 6.6179 29 6 2.3167 -2.3979 7.2024 30 6 2.0598 -3.6242 6.6184 31 6 1.3250 -3.6927 5.4495 32 1 -0.4849 0.8401 0.0004 33 1 -0.5213 -2.3062 -1.1528 34 1 1.6116 -2.9386 -4.9402 35 1 1.1465 -4.6009 -4.5058 36 1 -0.8846 -5.5927 -5.3869 37 1 -2.5433 -5.6032 -7.2067 38 1 -2.8117 -3.6187 -8.6395 39 1 -1.4280 -1.6202 -8.2465 40 1 0.2236 -1.6060 -6.4203 41 1 -0.4968 -3.5536 3.5566 42 1 -0.6606 -1.7813 3.5565 43 1 0.7350 -0.4037 4.9889 44 1 2.0389 -0.2821 7.0741 45 1 2.8904 -2.3443 8.1158 46 1 2.4333 -4.5287 7.0752 47 1 1.1246 -4.6509 4.9931 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001702213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:22 Heat of formation + Delta-G solvation = -113.392616 kcal Electronic energy + Delta-G solvation = -31909.047479 eV Core-core repulsion = 27408.016978 eV Total energy + Delta-G solvation = -4501.030501 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.86054 -39.55304 -39.00173 -38.66989 -36.17634 -35.35803 -34.04179 -32.31231 -31.88421 -31.79341 -30.94580 -30.82500 -28.39398 -26.30901 -25.97570 -23.85930 -22.61861 -22.49574 -21.58026 -21.19019 -20.66826 -19.80065 -18.25680 -17.13401 -16.92344 -16.85035 -16.10265 -15.90644 -15.81643 -15.64974 -15.38686 -15.07796 -14.86497 -14.68510 -14.59216 -14.35050 -13.48886 -13.45333 -13.34180 -13.29212 -12.99281 -12.85289 -12.78608 -12.51068 -12.37090 -12.00256 -11.90171 -11.62597 -11.12029 -11.06281 -11.05033 -10.98633 -10.95410 -10.87879 -10.30237 -10.13909 -9.95954 -9.83537 -9.72103 -9.33783 -8.95773 -8.89041 -8.84086 -8.83529 -8.63503 -7.90304 -6.34057 -4.46160 1.17172 1.32427 1.36625 1.48550 2.92554 3.17928 3.25570 3.30589 3.49592 3.60061 3.82467 3.89391 4.21128 4.24418 4.72493 4.81141 4.90122 4.92768 4.93364 5.01437 5.06105 5.09102 5.19638 5.33126 5.42356 5.44837 5.54853 5.60395 5.64730 5.71172 5.74346 5.79544 5.93355 6.00814 6.03454 6.13164 6.23167 6.38544 6.43833 6.49517 6.50318 6.55307 6.58922 6.72959 6.92927 7.05336 7.07843 7.38310 7.51231 7.62854 7.73565 8.52458 8.70126 8.95167 9.25544 9.43284 10.70268 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002080 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.967365 B =13457.180108 C =14688.917459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.079 0.921 9 C 0.293 3.707 10 H 0.084 0.916 11 N -0.662 5.662 12 C 0.646 3.354 13 O -0.590 6.590 14 O -0.373 6.373 15 C 0.128 3.872 16 C -0.089 4.089 17 C -0.095 4.095 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.093 4.093 22 C 0.488 3.512 23 O -0.525 6.525 24 O -0.341 6.341 25 C 0.106 3.894 26 C -0.083 4.083 27 C -0.093 4.093 28 C -0.125 4.125 29 C -0.118 4.118 30 C -0.127 4.127 31 C -0.098 4.098 32 H 0.270 0.730 33 H 0.408 0.592 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 -6.137 -0.543 6.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.097 0.903 9 C 0.191 3.809 10 H 0.102 0.898 11 N -0.321 5.321 12 C 0.398 3.602 13 O -0.481 6.481 14 O -0.288 6.288 15 C 0.053 3.947 16 C -0.089 4.089 17 C -0.113 4.113 18 C -0.144 4.144 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.112 4.112 22 C 0.332 3.668 23 O -0.413 6.413 24 O -0.258 6.258 25 C 0.032 3.968 26 C -0.083 4.083 27 C -0.111 4.111 28 C -0.143 4.143 29 C -0.136 4.136 30 C -0.145 4.145 31 C -0.116 4.116 32 H 0.080 0.920 33 H 0.244 0.756 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.917 -6.239 -0.586 6.553 hybrid contribution -0.212 1.251 0.009 1.269 sum -2.130 -4.987 -0.577 5.454 Atomic orbital electron populations 1.69900 1.05888 1.28003 1.46564 1.25158 0.95066 1.00127 0.92982 0.86341 0.79997 0.81914 0.78457 1.20291 1.20975 1.19223 1.21186 0.93817 0.88420 1.52918 0.90292 1.17830 0.86248 0.99801 0.77068 0.89812 1.45055 1.16227 1.64723 1.06062 1.17994 0.83235 0.78043 0.80905 1.90895 1.16134 1.56110 1.85006 1.86306 1.43629 1.80650 1.18184 1.21519 0.93062 1.00193 0.79881 1.19670 0.98423 0.94684 0.96164 1.21126 0.94860 0.98077 0.97279 1.21127 0.98686 0.98611 0.95990 1.21183 0.99184 0.93580 0.99431 1.21144 0.96497 0.98432 0.98248 1.21162 0.97885 0.97446 0.94668 1.24371 0.88106 0.69729 0.84638 1.90494 1.17131 1.46841 1.86829 1.86592 1.40502 1.84426 1.14254 1.21592 0.90951 1.02417 0.81835 1.19657 0.99651 0.93694 0.95312 1.21164 0.97333 0.97416 0.95159 1.21133 0.98574 0.98431 0.96154 1.21148 0.99809 0.92750 0.99920 1.21096 0.99374 0.97777 0.96206 1.21089 0.96968 0.98046 0.95505 0.91971 0.75557 0.90585 0.90737 0.85748 0.85953 0.86138 0.85919 0.85639 0.91311 0.90795 0.85670 0.86026 0.86255 0.86075 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.24 11.58 55.43 0.64 -22.60 16 2 C 0.07 1.93 5.23 -17.82 -0.09 1.84 16 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.53 -13.92 8.80 -34.44 -0.30 -14.22 16 8 H 0.08 2.10 7.81 -52.48 -0.41 1.69 16 9 C 0.29 7.30 2.67 -70.24 -0.19 7.11 16 10 H 0.08 2.05 7.57 -51.93 -0.39 1.65 16 11 N -0.66 -16.13 4.36 -61.01 -0.27 -16.40 16 12 C 0.65 15.14 8.71 54.05 0.47 15.61 16 13 O -0.59 -14.78 15.80 -19.29 -0.30 -15.08 16 14 O -0.37 -7.63 10.25 -40.31 -0.41 -8.04 16 15 C 0.13 2.10 5.60 36.00 0.20 2.30 16 16 C -0.09 -1.26 5.52 -104.63 -0.58 -1.84 16 17 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 18 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 19 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 20 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 21 C -0.09 -1.22 9.70 -39.59 -0.38 -1.61 16 22 C 0.49 11.75 6.10 36.00 0.22 11.97 16 23 O -0.52 -13.17 15.54 -18.75 -0.29 -13.46 16 24 O -0.34 -7.51 10.12 -39.25 -0.40 -7.91 16 25 C 0.11 1.92 5.59 36.01 0.20 2.12 16 26 C -0.08 -1.30 5.52 -104.63 -0.58 -1.88 16 27 C -0.09 -1.36 9.70 -39.58 -0.38 -1.75 16 28 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 29 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 30 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 31 C -0.10 -1.33 9.70 -39.59 -0.38 -1.71 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.41 10.18 7.59 -40.82 -0.31 9.87 16 34 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 35 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 42 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 43 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 47 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 415.49 15.07 6.26 6.26 Total: -1.00 -31.51 415.49 -10.51 -42.02 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -6.15 Total: 13.88 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -4.57 Total: 5.68 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.38 Total: -39.00 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.41 Total: -44.49 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.51 -10.51 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001702213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.368 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds