Wall clock time and date at job start Tue Mar 31 2020 05:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00239 * 2 1 4 4 H 1.48502 * 109.47334 * 269.99936 * 3 2 1 5 5 H 1.48494 * 109.47396 * 30.00187 * 3 2 1 6 6 H 1.48503 * 109.47358 * 150.00111 * 3 2 1 7 7 C 1.37881 * 119.99333 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99176 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00389 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47422 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.47031 * 59.99818 * 9 7 2 12 12 C 1.34775 * 119.99916 * 85.00020 * 11 9 7 13 13 O 1.21524 * 120.00023 * 0.02562 * 12 11 9 14 14 O 1.34635 * 120.00295 * 180.02562 * 12 11 9 15 15 C 1.45199 * 117.00388 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47134 * 180.02562 * 15 14 12 17 17 C 1.38240 * 119.99409 * 269.72089 * 16 15 14 18 18 C 1.38241 * 119.99545 * 179.77015 * 17 16 15 19 19 C 1.38233 * 119.99875 * 0.50400 * 18 17 16 20 20 C 1.38234 * 120.00323 * 359.74893 * 19 18 17 21 21 C 1.38229 * 120.00470 * 89.99719 * 16 15 14 22 22 C 1.50696 * 109.47069 * 300.00044 * 9 7 2 23 23 O 1.20825 * 119.99897 * 119.99962 * 22 9 7 24 24 O 1.34227 * 119.99883 * 299.99710 * 22 9 7 25 25 C 1.45205 * 116.99929 * 180.02562 * 24 22 9 26 26 C 1.50701 * 109.46997 * 180.02562 * 25 24 22 27 27 C 1.38235 * 119.99808 * 89.99829 * 26 25 24 28 28 C 1.38243 * 119.99602 * 179.97438 * 27 26 25 29 29 C 1.38231 * 120.00070 * 0.07188 * 28 27 26 30 30 C 1.38234 * 119.99892 * 359.90902 * 29 28 27 31 31 C 1.38230 * 119.99865 * 269.97574 * 26 25 24 32 32 H 0.97001 * 119.99558 * 359.97438 * 1 2 3 33 33 H 0.96989 * 119.99979 * 264.99744 * 11 9 7 34 34 H 1.09006 * 109.46277 * 299.99569 * 15 14 12 35 35 H 1.08998 * 109.47401 * 59.99503 * 15 14 12 36 36 H 1.08002 * 120.00056 * 359.97438 * 17 16 15 37 37 H 1.07995 * 119.99769 * 180.23358 * 18 17 16 38 38 H 1.08003 * 119.99975 * 179.73135 * 19 18 17 39 39 H 1.07999 * 120.00230 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.00159 * 359.97438 * 21 16 15 41 41 H 1.08993 * 109.47592 * 59.99660 * 25 24 22 42 42 H 1.09001 * 109.46728 * 299.99506 * 25 24 22 43 43 H 1.08000 * 120.00616 * 359.70324 * 27 26 25 44 44 H 1.08001 * 119.99556 * 179.97438 * 28 27 26 45 45 H 1.07997 * 119.99633 * 179.97438 * 29 28 27 46 46 H 1.07999 * 119.99751 * 180.02562 * 30 29 28 47 47 H 1.08001 * 120.00371 * 0.02562 * 31 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 1.9592 -3.3278 0.0005 11 7 0.4091 -2.5770 -1.1960 12 6 0.9274 -3.0249 -2.3567 13 8 2.0929 -3.3646 -2.4106 14 8 0.1540 -3.0959 -3.4564 15 6 0.7787 -3.5883 -4.6711 16 6 -0.2326 -3.5966 -5.7883 17 6 -1.0057 -4.7206 -6.0123 18 6 -1.9367 -4.7266 -7.0341 19 6 -2.0873 -3.6125 -7.8385 20 6 -1.3106 -2.4905 -7.6178 21 6 -0.3832 -2.4826 -6.5927 22 6 0.3841 -2.5787 1.2306 23 8 -0.8140 -2.6890 1.1193 24 8 0.9429 -2.5269 2.4499 25 6 0.0471 -2.6097 3.5897 26 6 0.8476 -2.5350 4.8643 27 6 1.1042 -1.3087 5.4484 28 6 1.8381 -1.2402 6.6179 29 6 2.3167 -2.3979 7.2024 30 6 2.0598 -3.6242 6.6184 31 6 1.3250 -3.6927 5.4495 32 1 -0.4849 0.8401 0.0004 33 1 -0.5213 -2.3062 -1.1528 34 1 1.6116 -2.9386 -4.9402 35 1 1.1465 -4.6009 -4.5058 36 1 -0.8846 -5.5927 -5.3869 37 1 -2.5433 -5.6032 -7.2067 38 1 -2.8117 -3.6187 -8.6395 39 1 -1.4280 -1.6202 -8.2465 40 1 0.2236 -1.6060 -6.4203 41 1 -0.4968 -3.5536 3.5566 42 1 -0.6606 -1.7813 3.5565 43 1 0.7350 -0.4037 4.9889 44 1 2.0389 -0.2821 7.0741 45 1 2.8904 -2.3443 8.1158 46 1 2.4333 -4.5287 7.0752 47 1 1.1246 -4.6509 4.9931 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001702213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:21 Heat of formation + Delta-G solvation = -129.020931 kcal Electronic energy + Delta-G solvation = -31909.725173 eV Core-core repulsion = 27408.016978 eV Total energy + Delta-G solvation = -4501.708195 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.60302 -41.09049 -40.09925 -39.91744 -37.86878 -37.12564 -35.99697 -34.14406 -33.11135 -33.00290 -31.84047 -31.81583 -30.23997 -27.57703 -27.37662 -25.74327 -23.52184 -23.49511 -22.97231 -22.27673 -22.08505 -21.68254 -20.06435 -19.03834 -18.20153 -18.03475 -17.69949 -17.53521 -17.33060 -17.10800 -16.88695 -16.67137 -16.04391 -15.96192 -15.85023 -15.74790 -15.13679 -14.76753 -14.53916 -14.33975 -14.29336 -14.06751 -13.93017 -13.87461 -13.82783 -13.60889 -13.26268 -13.18460 -12.90311 -12.77244 -12.36761 -12.06631 -12.05353 -12.01630 -11.99692 -11.91613 -11.59865 -11.59630 -11.50704 -11.25399 -10.76530 -9.89495 -9.86045 -9.84568 -9.83666 -9.75879 -8.34684 -6.53986 0.15022 0.25678 0.46417 0.48761 1.31224 1.36194 1.38781 1.49794 1.63222 1.93033 2.23672 2.33234 2.82814 2.93084 3.06267 3.55255 3.70772 3.82061 3.82597 3.89621 4.09184 4.10498 4.23470 4.24087 4.25979 4.26617 4.28431 4.32974 4.46554 4.55888 4.60743 4.63226 4.70374 4.72529 4.99614 5.02131 5.11862 5.14042 5.32312 5.49283 5.50411 5.54218 5.56461 5.57730 5.58414 5.61202 5.62242 5.64994 5.76018 6.05278 6.08154 6.48437 6.73627 7.07504 7.21579 7.54924 8.68453 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002080 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.967365 B =13457.180108 C =14688.917459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.037 3.963 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.288 3.712 10 H 0.081 0.919 11 N -0.665 5.665 12 C 0.648 3.352 13 O -0.611 6.611 14 O -0.375 6.375 15 C 0.125 3.875 16 C -0.114 4.114 17 C -0.107 4.107 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.128 4.128 21 C -0.111 4.111 22 C 0.491 3.509 23 O -0.541 6.541 24 O -0.350 6.350 25 C 0.107 3.893 26 C -0.110 4.110 27 C -0.114 4.114 28 C -0.127 4.127 29 C -0.111 4.111 30 C -0.124 4.124 31 C -0.107 4.107 32 H 0.271 0.729 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.114 0.886 44 H 0.145 0.855 45 H 0.155 0.845 46 H 0.153 0.847 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 -6.319 -0.213 6.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.168 4.168 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.089 0.911 9 C 0.185 3.815 10 H 0.099 0.901 11 N -0.322 5.322 12 C 0.400 3.600 13 O -0.504 6.504 14 O -0.290 6.290 15 C 0.051 3.949 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.144 4.144 19 C -0.128 4.128 20 C -0.146 4.146 21 C -0.129 4.129 22 C 0.336 3.664 23 O -0.431 6.431 24 O -0.266 6.266 25 C 0.033 3.967 26 C -0.110 4.110 27 C -0.132 4.132 28 C -0.145 4.145 29 C -0.128 4.128 30 C -0.142 4.142 31 C -0.126 4.126 32 H 0.080 0.920 33 H 0.240 0.760 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.140 0.860 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.133 0.867 44 H 0.163 0.837 45 H 0.173 0.827 46 H 0.171 0.829 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.933 -6.432 -0.261 6.722 hybrid contribution -0.227 1.233 -0.102 1.258 sum -2.160 -5.199 -0.362 5.641 Atomic orbital electron populations 1.69990 1.06850 1.28579 1.46882 1.25791 0.95777 1.02752 0.92442 0.85474 0.79080 0.78428 0.78349 1.20283 1.20152 1.18708 1.21315 0.93631 0.89518 1.53841 0.91132 1.17809 0.86679 0.99256 0.77760 0.90137 1.44951 1.15796 1.64991 1.06476 1.18022 0.83072 0.77524 0.81349 1.90863 1.17042 1.56966 1.85499 1.86317 1.43586 1.80555 1.18531 1.21802 0.93972 1.00188 0.78928 1.19605 0.99465 0.96256 0.96108 1.21323 0.95157 0.97765 0.98231 1.21498 0.98015 0.99887 0.94995 1.21631 0.98860 0.92709 0.99585 1.21467 0.95667 0.99778 0.97680 1.21302 0.98886 0.97133 0.95621 1.24109 0.87636 0.69437 0.85220 1.90465 1.17606 1.47735 1.87287 1.86557 1.41615 1.83891 1.14519 1.21797 0.90942 1.02318 0.81618 1.19589 1.01549 0.95178 0.94701 1.21252 0.98630 0.96748 0.96584 1.21444 0.97630 1.00260 0.95190 1.21613 0.98677 0.91973 1.00585 1.21498 0.98077 0.99414 0.95171 1.21295 0.97186 0.97646 0.96423 0.91967 0.76044 0.91030 0.90079 0.85117 0.83120 0.82840 0.83543 0.85978 0.90317 0.92194 0.86747 0.83676 0.82702 0.82895 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.59 11.58 21.45 0.25 -48.34 16 2 C 0.04 1.99 5.23 84.65 0.44 2.43 16 3 Si 0.96 42.77 29.54 68.60 2.03 44.79 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.54 -29.76 8.80 25.60 0.23 -29.53 16 8 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 9 C 0.29 14.93 2.67 43.49 0.12 15.05 16 10 H 0.08 4.13 7.57 -2.39 -0.02 4.12 16 11 N -0.66 -33.68 4.36 -577.34 -2.52 -36.20 16 12 C 0.65 31.50 8.71 129.79 1.13 32.62 16 13 O -0.61 -31.67 15.80 19.76 0.31 -31.36 16 14 O -0.38 -15.92 10.25 -55.44 -0.57 -16.49 16 15 C 0.13 4.25 5.60 71.24 0.40 4.65 16 16 C -0.11 -3.27 5.52 -19.87 -0.11 -3.38 16 17 C -0.11 -2.59 9.70 22.27 0.22 -2.37 16 18 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 19 C -0.11 -1.94 10.05 22.27 0.22 -1.72 16 20 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 21 C -0.11 -2.89 9.70 22.27 0.22 -2.68 16 22 C 0.49 24.64 6.10 71.23 0.43 25.07 16 23 O -0.54 -28.19 15.54 21.97 0.34 -27.85 16 24 O -0.35 -16.00 10.12 -51.39 -0.52 -16.52 16 25 C 0.11 4.01 5.59 71.24 0.40 4.41 16 26 C -0.11 -3.49 5.52 -19.87 -0.11 -3.60 16 27 C -0.11 -3.37 9.70 22.27 0.22 -3.15 16 28 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 29 C -0.11 -2.14 10.05 22.27 0.22 -1.92 16 30 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 31 C -0.11 -2.81 9.70 22.27 0.22 -2.60 16 32 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.40 20.99 7.59 -92.72 -0.70 20.29 16 34 H 0.07 2.44 8.08 -2.38 -0.02 2.42 16 35 H 0.08 2.58 8.08 -2.39 -0.02 2.56 16 36 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 37 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 41 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 42 H 0.06 2.36 8.08 -2.39 -0.02 2.35 16 43 H 0.11 3.49 8.06 -2.91 -0.02 3.46 16 44 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 46 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 47 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -69.81 415.49 4.75 -65.06 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: 0.29 Total: 43.20 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 5.13 Total: 23.70 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.27 Total: -84.54 kcal Atomic # 8 Polarization: -91.78 SS G_CDS: -0.44 Total: -92.21 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -69.81 4.75 -65.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001702213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.961 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds