Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47177 * 239.99497 * 3 2 1 5 5 H 1.48493 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47046 * 119.99732 * 3 2 1 7 7 C 1.37877 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00257 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47365 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99593 * 90.00496 * 10 9 7 12 12 O 1.21593 * 119.99615 * 186.78059 * 11 10 9 13 13 N 1.34775 * 120.00532 * 6.77935 * 11 10 9 14 14 C 1.39995 * 120.00408 * 187.54593 * 13 11 10 15 15 C 1.38885 * 120.04863 * 143.17702 * 14 13 11 16 16 C 1.38099 * 119.96554 * 180.02562 * 15 14 13 17 17 C 1.38381 * 120.07267 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 119.95221 * 179.97438 * 17 16 15 19 19 C 1.38483 * 120.09787 * 0.02562 * 17 16 15 20 20 Cl 1.73594 * 119.98050 * 179.97438 * 19 17 16 21 21 C 1.38246 * 120.02821 * 359.67769 * 19 17 16 22 22 C 1.46498 * 119.99905 * 270.00047 * 10 9 7 23 23 C 1.53003 * 109.47005 * 242.32423 * 22 10 9 24 24 C 1.53005 * 109.46834 * 180.02562 * 23 22 10 25 25 C 1.52997 * 109.47060 * 60.00385 * 24 23 22 26 26 C 1.53001 * 109.47113 * 299.99883 * 25 24 23 27 27 C 1.53001 * 109.47547 * 60.00016 * 26 25 24 28 28 H 0.97001 * 119.99629 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46617 * 59.99964 * 9 7 2 30 30 H 1.09001 * 109.47078 * 300.00255 * 9 7 2 31 31 H 0.97007 * 119.99610 * 7.54744 * 13 11 10 32 32 H 1.07998 * 120.01783 * 0.03200 * 15 14 13 33 33 H 1.08003 * 119.96523 * 179.97438 * 16 15 14 34 34 H 1.08008 * 120.02773 * 180.29891 * 21 19 17 35 35 H 1.09000 * 109.47279 * 2.33248 * 22 10 9 36 36 H 1.09000 * 109.47323 * 300.00236 * 23 22 10 37 37 H 1.09001 * 109.46866 * 60.00555 * 23 22 10 38 38 H 1.09000 * 109.47094 * 300.00053 * 24 23 22 39 39 H 1.08996 * 109.46992 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.46913 * 180.02562 * 25 24 23 41 41 H 1.09000 * 109.47439 * 59.99878 * 25 24 23 42 42 H 1.09000 * 109.47416 * 300.00002 * 26 25 24 43 43 H 1.08998 * 109.47178 * 180.02562 * 26 25 24 44 44 H 1.08996 * 109.47477 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.46774 * 59.99592 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6409 -4.1248 1.1678 12 8 3.5214 -4.9634 1.1715 13 7 2.1028 -3.7076 2.3309 14 6 2.6608 -4.1181 3.5474 15 6 2.7071 -3.2402 4.6226 16 6 3.2584 -3.6467 5.8218 17 6 3.7652 -4.9277 5.9531 18 17 4.4581 -5.4352 7.4617 19 6 3.7214 -5.8050 4.8825 20 17 4.3586 -7.4110 5.0505 21 6 3.1649 -5.4044 3.6821 22 6 2.6791 -4.1694 -1.2682 23 6 2.2509 -5.6344 -1.3749 24 6 2.7486 -6.2160 -2.6997 25 6 4.2749 -6.1255 -2.7550 26 6 4.7031 -4.6605 -2.6482 27 6 4.2055 -4.0788 -1.3235 28 1 -0.4850 0.8401 -0.0004 29 1 0.6248 -2.5570 -0.8898 30 1 0.6241 -2.5567 0.8903 31 1 1.3288 -3.1229 2.3250 32 1 2.3122 -2.2402 4.5210 33 1 3.2949 -2.9639 6.6578 34 1 3.1263 -6.0902 2.8486 35 1 2.2511 -3.6044 -2.0963 36 1 2.6790 -6.1993 -0.5468 37 1 1.1635 -5.6988 -1.3350 38 1 2.3208 -5.6511 -3.5280 39 1 2.4431 -7.2595 -2.7759 40 1 4.6294 -6.5394 -3.6990 41 1 4.7026 -6.6903 -1.9267 42 1 4.2754 -4.0956 -3.4765 43 1 5.7905 -4.5960 -2.6881 44 1 4.5102 -3.0351 -1.2477 45 1 4.6331 -4.6437 -0.4952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001720712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -29.581107 kcal Electronic energy + Delta-G solvation = -29574.909784 eV Core-core repulsion = 25450.364027 eV Total energy + Delta-G solvation = -4124.545757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 370.096 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56408 -39.16062 -37.59204 -36.46646 -36.44325 -34.90981 -34.13681 -32.65437 -30.85030 -30.40420 -29.91838 -28.65693 -26.88270 -23.53884 -23.03745 -22.83929 -22.22735 -21.73887 -19.71159 -19.46833 -17.89417 -16.94964 -16.77359 -16.40982 -15.68897 -15.56975 -14.73959 -14.69973 -14.48873 -14.12303 -14.03760 -13.86251 -13.76620 -13.63402 -13.37675 -12.61449 -12.49794 -12.34941 -12.13977 -11.95666 -11.85040 -11.84319 -11.70225 -11.44280 -11.16109 -11.08861 -10.97640 -10.86640 -10.82272 -10.74874 -10.53486 -10.28256 -10.12978 -9.89768 -9.75197 -9.65892 -9.17648 -8.80577 -8.67299 -8.08142 -7.68458 -6.29595 -4.37746 1.00403 1.19864 1.89486 2.24119 3.10621 3.17373 3.22929 3.26435 3.38562 3.85105 4.21188 4.39821 4.71422 5.03051 5.03867 5.09454 5.09737 5.20471 5.24091 5.30386 5.50826 5.60967 5.71558 5.80604 5.85191 5.87031 5.90251 5.93080 6.02654 6.09728 6.25767 6.26502 6.32094 6.36635 6.42664 6.53654 6.60201 6.64617 6.75136 6.82256 6.99616 7.08526 7.26902 7.60603 7.66299 7.91693 8.40542 8.72295 9.07852 9.31732 10.76507 Molecular weight = 370.10amu Principal moments of inertia in cm(-1) A = 0.007640 B = 0.003559 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.979670 B = 7865.405460 C =10728.527654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.241 3.759 10 N -0.604 5.604 11 C 0.711 3.289 12 O -0.593 6.593 13 N -0.683 5.683 14 C 0.203 3.797 15 C -0.135 4.135 16 C -0.079 4.079 17 C -0.060 4.060 18 Cl -0.064 7.064 19 C -0.011 4.011 20 Cl -0.056 7.056 21 C -0.106 4.106 22 C 0.177 3.823 23 C -0.135 4.135 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.138 4.138 28 H 0.267 0.733 29 H 0.040 0.960 30 H 0.028 0.972 31 H 0.419 0.581 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -9.992 5.401 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.121 3.879 10 N -0.336 5.336 11 C 0.414 3.586 12 O -0.474 6.474 13 N -0.332 5.332 14 C 0.105 3.895 15 C -0.157 4.157 16 C -0.099 4.099 17 C -0.088 4.088 18 Cl -0.035 7.035 19 C -0.039 4.039 20 Cl -0.027 7.027 21 C -0.128 4.128 22 C 0.073 3.927 23 C -0.173 4.173 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.176 4.176 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.259 0.741 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.178 0.822 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.538 -10.579 5.400 12.715 hybrid contribution 0.078 1.398 0.071 1.402 sum 4.616 -9.181 5.471 11.642 Atomic orbital electron populations 1.69901 1.05977 1.27587 1.49459 1.24932 0.94842 0.99305 0.94586 0.86568 0.79571 0.82509 0.78932 1.20078 1.21113 1.20095 1.21458 0.93671 0.90286 1.52304 0.92015 1.19381 0.87420 0.82963 0.98170 1.47540 1.47371 1.35650 1.03047 1.15795 0.81292 0.81107 0.80454 1.90766 1.33756 1.36904 1.85963 1.42970 1.34103 1.53414 1.02698 1.17473 0.94935 0.91374 0.85710 1.21093 1.02359 0.99864 0.92336 1.20732 0.97487 0.93492 0.98142 1.20629 1.05315 0.95224 0.87662 1.98356 1.83239 1.91168 1.30767 1.20533 1.01906 0.87285 0.94193 1.98367 1.85048 1.21464 1.97819 1.21243 0.99461 0.95881 0.96203 1.20747 0.94257 0.92867 0.84840 1.21972 1.00254 0.96767 0.98309 1.21448 0.95787 1.00223 0.97557 1.21526 0.95901 0.97025 1.01060 1.21482 1.00047 0.95673 0.97998 1.22048 0.95615 1.01661 0.98314 0.92358 0.94239 0.95429 0.74082 0.83883 0.83979 0.82156 0.89714 0.90398 0.92485 0.92226 0.92387 0.92710 0.91936 0.92407 0.92449 0.92073 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.14 13.29 55.43 0.74 -22.40 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.78 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.14 9.39 -34.44 -0.32 -13.46 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.23 5.09 -5.20 -0.03 5.21 16 10 N -0.60 -11.63 2.41 -173.17 -0.42 -12.05 16 11 C 0.71 13.54 7.52 -86.92 -0.65 12.89 16 12 O -0.59 -11.79 10.09 5.28 0.05 -11.73 16 13 N -0.68 -11.69 5.20 -14.22 -0.07 -11.77 16 14 C 0.20 3.17 6.28 -83.68 -0.53 2.65 16 15 C -0.14 -1.81 9.97 -39.39 -0.39 -2.20 16 16 C -0.08 -0.96 9.82 -39.58 -0.39 -1.35 16 17 C -0.06 -0.79 6.32 -39.44 -0.25 -1.04 16 18 Cl -0.06 -0.77 27.95 -51.86 -1.45 -2.21 16 19 C -0.01 -0.16 6.32 -39.49 -0.25 -0.41 16 20 Cl -0.06 -0.75 27.95 -51.86 -1.45 -2.20 16 21 C -0.11 -1.66 8.49 -39.37 -0.33 -1.99 16 22 C 0.18 3.06 2.54 -67.93 -0.17 2.89 16 23 C -0.13 -2.05 5.17 -26.73 -0.14 -2.19 16 24 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 25 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 26 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 27 C -0.14 -2.34 5.09 -26.73 -0.14 -2.47 16 28 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.04 0.91 7.94 -51.93 -0.41 0.50 16 30 H 0.03 0.61 6.06 -51.93 -0.31 0.29 16 31 H 0.42 7.04 6.48 -40.82 -0.26 6.78 16 32 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.16 2.71 6.28 -52.48 -0.33 2.38 16 35 H 0.08 1.50 7.81 -51.93 -0.41 1.10 16 36 H 0.08 1.31 6.58 -51.93 -0.34 0.97 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.72 5.79 -51.93 -0.30 1.42 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -25.66 387.28 -12.09 -37.75 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.14 Total: 8.82 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -4.16 Total: -4.83 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.25 Total: -46.22 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.05 Total: -11.73 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -2.90 Total: -4.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -25.66 -12.09 -37.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001720712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.168 kcal (2) G-P(sol) polarization free energy of solvation -25.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds