Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00042 * 2 1 4 4 N 1.46496 * 109.46879 * 125.00441 * 3 2 1 5 5 C 1.36614 * 119.89637 * 270.02464 * 4 3 2 6 6 S 1.76196 * 119.21764 * 359.97292 * 5 4 3 7 7 C 1.76204 * 100.00017 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99431 * 0.02562 * 7 6 5 9 9 C 1.38720 * 120.00089 * 180.02562 * 7 6 5 10 10 N 1.31576 * 120.00026 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99842 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47285 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47142 * 120.00078 * 11 9 7 14 14 H 1.48499 * 109.47275 * 240.00154 * 11 9 7 15 15 N 1.31110 * 121.55958 * 180.02562 * 5 4 3 16 16 C 1.34712 * 121.65317 * 359.95507 * 15 5 4 17 17 S 1.75877 * 130.50034 * 180.38787 * 16 15 5 18 18 C 1.75286 * 92.35561 * 180.02562 * 17 16 15 19 19 C 1.33330 * 111.20896 * 359.64269 * 18 17 16 20 20 C 1.48222 * 122.79187 * 180.24937 * 19 18 17 21 21 C 1.39429 * 120.13261 * 129.75462 * 20 19 18 22 22 C 1.37992 * 119.87127 * 179.67176 * 21 20 19 23 23 C 1.38334 * 120.12719 * 0.62439 * 22 21 20 24 24 C 1.38347 * 120.26440 * 359.66838 * 23 22 21 25 25 C 1.37987 * 120.12539 * 0.02562 * 24 23 22 26 26 C 1.39225 * 119.62135 * 0.04292 * 16 15 5 27 27 C 1.34716 * 119.89585 * 90.00119 * 4 3 2 28 28 O 1.21910 * 120.54779 * 0.02562 * 27 4 3 29 29 H 1.08001 * 119.99823 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00153 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.99453 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47095 * 5.00778 * 3 2 1 33 33 H 1.08995 * 109.47455 * 245.00528 * 3 2 1 34 34 H 0.96999 * 119.99366 * 179.97438 * 10 9 7 35 35 H 1.08002 * 124.39669 * 179.91563 * 18 17 16 36 36 H 1.08010 * 120.06174 * 359.97438 * 21 20 19 37 37 H 1.07997 * 119.93495 * 180.31563 * 22 21 20 38 38 H 1.07999 * 119.87009 * 179.69893 * 23 22 21 39 39 H 1.07996 * 119.93616 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.06126 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1313 5 6 2.5859 1.8287 2.3367 6 16 0.9390 2.4316 2.5056 7 6 0.9667 2.9283 4.1960 8 1 1.8658 2.8023 4.7810 9 6 -0.1661 3.4810 4.7753 10 7 -1.2615 3.6339 4.0626 11 14 -0.1363 4.0081 6.5671 12 1 1.2048 3.7323 7.1420 13 1 -0.4249 5.4618 6.6602 14 1 -1.1650 3.2498 7.3233 15 7 3.3913 1.8686 3.3705 16 6 4.6598 1.4212 3.2962 17 16 5.9213 1.3552 4.5199 18 6 7.0690 0.6443 3.4019 19 6 6.5236 0.4675 2.1981 20 6 7.2665 -0.1218 1.0589 21 6 6.7096 -1.1699 0.3272 22 6 7.4030 -1.7100 -0.7366 23 6 8.6539 -1.2222 -1.0695 24 6 9.2144 -0.1865 -0.3434 25 6 8.5277 0.3658 0.7184 26 6 5.1372 0.9023 2.0956 27 6 4.2487 0.8657 0.9799 28 8 4.6192 0.4208 -0.0929 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4026 -0.9314 34 1 -2.0537 4.0200 4.4678 35 1 8.0847 0.3794 3.6563 36 1 5.7352 -1.5550 0.5896 37 1 6.9704 -2.5185 -1.3072 38 1 9.1951 -1.6513 -1.8998 39 1 10.1911 0.1905 -0.6082 40 1 8.9660 1.1746 1.2843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001811328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = 64.990421 kcal Electronic energy + Delta-G solvation = -27673.905237 eV Core-core repulsion = 23864.856742 eV Total energy + Delta-G solvation = -3809.048495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 370.055 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02743 -39.01895 -37.01450 -36.50463 -34.71769 -33.01185 -32.43696 -30.77713 -30.61047 -28.62484 -26.89639 -25.96575 -24.50780 -23.60199 -22.58318 -22.20660 -20.01097 -19.66622 -19.22504 -17.81847 -17.25024 -16.75842 -16.36259 -16.00853 -15.78889 -15.21514 -15.06533 -14.68992 -14.50453 -14.39027 -13.74320 -13.49625 -13.32642 -13.24099 -13.21882 -12.83108 -12.71640 -12.47039 -12.07628 -11.89655 -11.62684 -11.42603 -11.35989 -11.31772 -11.14560 -10.87353 -10.62436 -10.45108 -9.79419 -9.66278 -9.56782 -9.49824 -9.28266 -9.01633 -8.76747 -8.64249 -8.25186 -7.85711 -7.03257 -6.79341 -4.54060 0.71309 1.27709 1.54118 1.60310 2.13872 2.18817 2.26268 2.32047 2.56244 3.02169 3.07472 3.16464 3.22559 3.75511 3.93620 4.04770 4.63936 4.69300 4.78803 4.92516 5.02130 5.05882 5.09751 5.14575 5.26726 5.29878 5.45151 5.59069 5.63518 5.69451 5.74888 5.78788 6.02899 6.10383 6.12841 6.25477 6.38658 6.48624 6.61875 6.67407 6.71876 6.79642 6.84363 7.08627 7.14057 7.29470 8.14174 8.24889 8.30418 8.74715 10.27384 Molecular weight = 370.06amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.003350 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.791420 B = 8356.156844 C =10299.978224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.176 4.176 3 C 0.123 3.877 4 N -0.522 5.522 5 C 0.334 3.666 6 S 0.207 5.793 7 C -0.543 4.543 8 H 0.119 0.881 9 C 0.079 3.921 10 N -0.866 5.866 11 Si 0.935 3.065 12 H -0.262 1.262 13 H -0.275 1.275 14 H -0.275 1.275 15 N -0.520 5.520 16 C 0.140 3.860 17 S 0.156 5.844 18 C -0.252 4.252 19 C 0.021 3.979 20 C -0.024 4.024 21 C -0.059 4.059 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.106 4.106 26 C -0.291 4.291 27 C 0.568 3.432 28 O -0.537 6.537 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.279 0.721 35 H 0.167 0.833 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.416 -6.038 -5.616 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.001 3.999 4 N -0.245 5.245 5 C -0.032 4.032 6 S 0.451 5.549 7 C -0.692 4.692 8 H 0.137 0.863 9 C -0.132 4.132 10 N -0.499 5.499 11 Si 0.759 3.241 12 H -0.185 1.185 13 H -0.201 1.201 14 H -0.201 1.201 15 N -0.250 5.250 16 C -0.104 4.104 17 S 0.417 5.583 18 C -0.387 4.387 19 C 0.009 3.991 20 C -0.027 4.027 21 C -0.078 4.078 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.125 4.125 26 C -0.311 4.311 27 C 0.364 3.636 28 O -0.416 6.416 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.184 0.816 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.273 -5.397 -4.793 11.751 hybrid contribution 1.070 -0.410 -0.202 1.163 sum 10.343 -5.807 -4.995 12.870 Atomic orbital electron populations 1.23951 0.95439 1.02572 0.97535 1.22970 0.96156 0.97902 1.02501 1.20975 0.92031 0.97462 0.89453 1.46351 1.12962 1.53888 1.11291 1.26448 1.03206 0.92040 0.81550 1.83595 0.92515 1.61561 1.17189 1.23734 1.03525 1.46852 0.95062 0.86331 1.25205 0.93860 0.93565 1.00575 1.69909 1.02368 1.40197 1.37448 0.85825 0.79253 0.78404 0.80620 1.18533 1.20080 1.20072 1.68594 1.01761 1.28836 1.25812 1.23873 0.96018 0.95033 0.95522 1.83883 0.99975 1.63633 1.10805 1.24952 1.04013 1.13006 0.96741 1.17871 0.90678 0.97691 0.92866 1.18405 0.93485 0.95905 0.94889 1.21102 0.98333 0.94539 0.93810 1.21010 0.95089 1.00648 0.97556 1.21116 0.95859 0.97316 0.99702 1.20947 0.99945 0.97502 0.96419 1.21155 0.93951 0.99753 0.97629 1.20200 0.96373 1.19446 0.95094 1.16467 0.80421 0.78290 0.88445 1.90846 1.75404 1.47579 1.27761 0.87590 0.88047 0.87210 0.88133 0.87687 0.91069 0.81571 0.86304 0.86376 0.86557 0.86341 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 14.32 29.01 0.42 -1.64 16 2 C -0.18 -2.59 9.85 -36.03 -0.35 -2.94 16 3 C 0.12 1.96 5.34 -5.20 -0.03 1.94 16 4 N -0.52 -10.04 2.59 -120.31 -0.31 -10.36 16 5 C 0.33 7.08 7.78 -88.41 -0.69 6.39 16 6 S 0.21 4.50 19.59 -107.50 -2.11 2.39 16 7 C -0.54 -13.49 9.24 30.91 0.29 -13.21 16 8 H 0.12 3.04 6.52 -52.48 -0.34 2.70 16 9 C 0.08 1.93 5.49 -17.48 -0.10 1.83 16 10 N -0.87 -21.65 13.22 55.48 0.73 -20.92 16 11 Si 0.93 19.27 29.55 -169.99 -5.02 14.24 16 12 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 13 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 15 N -0.52 -11.52 8.44 -11.42 -0.10 -11.62 16 16 C 0.14 2.82 7.67 -15.92 -0.12 2.70 16 17 S 0.16 2.51 23.22 -107.50 -2.50 0.02 16 18 C -0.25 -3.72 10.64 29.02 0.31 -3.42 16 19 C 0.02 0.36 5.50 -104.55 -0.57 -0.22 16 20 C -0.02 -0.39 5.23 -104.91 -0.55 -0.94 16 21 C -0.06 -0.94 7.62 -39.23 -0.30 -1.24 16 22 C -0.12 -1.69 10.03 -39.64 -0.40 -2.09 16 23 C -0.12 -1.47 10.04 -39.51 -0.40 -1.86 16 24 C -0.13 -1.57 10.03 -39.63 -0.40 -1.97 16 25 C -0.11 -1.46 9.59 -39.23 -0.38 -1.84 16 26 C -0.29 -5.74 6.00 -104.86 -0.63 -6.37 16 27 C 0.57 11.47 7.47 -14.58 -0.11 11.36 16 28 O -0.54 -11.03 13.35 5.00 0.07 -10.96 16 29 H 0.11 1.36 7.84 -52.49 -0.41 0.95 16 30 H 0.10 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.10 1.52 6.21 -51.93 -0.32 1.20 16 33 H 0.11 1.60 7.43 -51.93 -0.39 1.22 16 34 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 35 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.12 2.02 7.40 -52.48 -0.39 1.64 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -28.27 373.22 -11.56 -39.84 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -3.94 Total: 5.26 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -4.01 Total: -13.51 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.32 Total: -42.90 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -4.60 Total: 2.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.27 -11.56 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001811328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.826 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds