Wall clock time and date at job start Tue Mar 31 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47243 * 299.99934 * 3 2 1 6 6 H 1.48505 * 109.47040 * 59.99999 * 3 2 1 7 7 C 1.38744 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99440 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.76199 * 99.99894 * 180.02562 * 9 7 2 11 11 N 1.31121 * 119.17484 * 0.02562 * 10 9 7 12 12 C 1.34832 * 121.47928 * 179.97438 * 11 10 9 13 13 S 1.75554 * 130.71277 * 179.97438 * 12 11 10 14 14 C 1.76293 * 92.43838 * 180.02562 * 13 12 11 15 15 C 1.32678 * 111.27030 * 359.97438 * 14 13 12 16 16 C 1.38780 * 119.68984 * 359.97438 * 12 11 10 17 17 C 1.42806 * 118.32001 * 359.74910 * 16 12 11 18 18 O 1.21896 * 120.67180 * 180.31065 * 17 16 12 19 19 N 1.34788 * 118.66239 * 0.53141 * 17 16 12 20 20 C 1.40075 * 119.90252 * 179.72787 * 19 17 16 21 21 C 1.38863 * 120.07021 * 89.68812 * 20 19 17 22 22 C 1.38107 * 119.93341 * 179.74273 * 21 20 19 23 23 C 1.38291 * 120.06801 * 0.50847 * 22 21 20 24 24 C 1.38286 * 120.13630 * 359.77162 * 23 22 21 25 25 C 1.38116 * 120.06521 * 359.97438 * 24 23 22 26 26 C 1.52854 * 110.18241 * 180.02562 * 15 14 13 27 27 C 1.54132 * 104.90240 * 342.42237 * 26 15 14 28 28 C 1.52591 * 138.22012 * 179.97438 * 14 13 12 29 29 H 0.96997 * 119.99928 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03081 * 359.97438 * 21 20 19 31 31 H 1.08000 * 119.96827 * 180.23828 * 22 21 20 32 32 H 1.08002 * 119.92963 * 179.73823 * 23 22 21 33 33 H 1.07999 * 119.96331 * 179.97438 * 24 23 22 34 34 H 1.08000 * 120.03048 * 180.02562 * 25 24 23 35 35 H 1.08995 * 110.35371 * 223.56299 * 26 15 14 36 36 H 1.09004 * 110.44735 * 101.32108 * 26 15 14 37 37 H 1.09001 * 111.00720 * 268.50554 * 27 26 15 38 38 H 1.08998 * 111.04545 * 144.66740 * 27 26 15 39 39 H 1.08999 * 110.36576 * 316.38231 * 28 14 13 40 40 H 1.08994 * 110.36468 * 78.59929 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0093 -1.2016 -0.0005 8 1 3.0894 -1.2015 -0.0010 9 16 1.1284 -2.7275 -0.0005 10 6 2.4782 -3.8600 -0.0005 11 7 3.7038 -3.3938 0.0000 12 6 4.7707 -4.2182 0.0005 13 16 6.4904 -3.8654 0.0007 14 6 6.9179 -5.5757 0.0007 15 6 5.8351 -6.3425 0.0011 16 6 4.5775 -5.5925 0.0011 17 6 3.2383 -6.0884 0.0066 18 8 3.0192 -7.2874 0.0129 19 7 2.2213 -5.2037 0.0000 20 6 0.8975 -5.6616 -0.0006 21 6 0.2395 -5.8893 1.2008 22 6 -1.0675 -6.3356 1.1969 23 6 -1.7174 -6.5659 -0.0019 24 6 -1.0630 -6.3457 -1.2000 25 6 0.2424 -5.8943 -1.2026 26 6 6.2338 -7.8181 0.0018 27 6 7.7079 -7.8306 -0.4482 28 6 8.1801 -6.4331 0.0003 29 1 -0.4850 0.8400 0.0004 30 1 0.7480 -5.7139 2.1373 31 1 -1.5811 -6.5092 2.1310 32 1 -2.7381 -6.9190 -0.0023 33 1 -1.5731 -6.5268 -2.1345 34 1 0.7528 -5.7221 -2.1386 35 1 5.6178 -8.3775 -0.7021 36 1 6.1397 -8.2375 1.0035 37 1 7.7854 -7.9408 -1.5298 38 1 8.2667 -8.6144 0.0632 39 1 8.9093 -6.0344 -0.7049 40 1 8.6077 -6.4791 1.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002250753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:47 Heat of formation + Delta-G solvation = 40.126197 kcal Electronic energy + Delta-G solvation = -27799.655077 eV Core-core repulsion = 23989.528388 eV Total energy + Delta-G solvation = -3810.126689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 370.055 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.89298 -40.27380 -39.35666 -38.63287 -36.18346 -34.86236 -33.54976 -32.01819 -30.95696 -29.50764 -28.88825 -27.84462 -26.27999 -25.18731 -23.70997 -23.26997 -22.05844 -20.81758 -20.42683 -19.17016 -19.08545 -18.59621 -17.72912 -17.51975 -17.15004 -17.04415 -16.49717 -16.19060 -15.84568 -15.65666 -15.19062 -14.95678 -14.52789 -14.48432 -14.13245 -13.77557 -13.70172 -13.57825 -13.54066 -13.32788 -13.11600 -13.01405 -12.83645 -12.66454 -12.31020 -12.12883 -12.06238 -11.99694 -11.83767 -11.35597 -11.35064 -11.19451 -10.88871 -10.82491 -10.01513 -9.88067 -9.80489 -9.43052 -8.64039 -8.62689 -6.44206 -0.86102 -0.01139 0.09860 0.35259 0.48739 0.50537 0.88848 0.98460 1.35753 1.37956 1.43988 1.53257 2.07104 2.31861 2.65898 2.82145 2.90771 3.35328 3.44795 3.55126 3.79288 3.86157 3.88954 4.10205 4.16752 4.17164 4.22026 4.42883 4.49081 4.50382 4.60674 4.79416 4.84971 4.94965 4.97108 4.98258 5.14075 5.15338 5.31510 5.33702 5.34530 5.39700 5.41955 5.43298 5.45207 5.93342 6.19901 6.53984 6.63286 6.86215 8.45581 Molecular weight = 370.06amu Principal moments of inertia in cm(-1) A = 0.007457 B = 0.004624 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.196462 B = 6053.356078 C = 9482.807579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.041 3.959 3 Si 0.994 3.006 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.571 4.571 8 H 0.103 0.897 9 S 0.197 5.803 10 C 0.332 3.668 11 N -0.535 5.535 12 C 0.093 3.907 13 S 0.211 5.789 14 C -0.232 4.232 15 C -0.073 4.073 16 C -0.287 4.287 17 C 0.559 3.441 18 O -0.554 6.554 19 N -0.483 5.483 20 C 0.079 3.921 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.058 4.058 27 C -0.104 4.104 28 C -0.031 4.031 29 H 0.285 0.715 30 H 0.114 0.886 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 -11.980 -0.099 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.168 4.168 3 Si 0.815 3.185 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.720 4.720 8 H 0.121 0.879 9 S 0.441 5.559 10 C -0.035 4.035 11 N -0.265 5.265 12 C -0.148 4.148 13 S 0.475 5.525 14 C -0.349 4.349 15 C -0.083 4.083 16 C -0.308 4.308 17 C 0.356 3.644 18 O -0.435 6.435 19 N -0.204 5.204 20 C -0.010 4.010 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.098 4.098 27 C -0.143 4.143 28 C -0.070 4.070 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.180 0.820 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.310 -10.542 -0.097 11.804 hybrid contribution 0.518 -0.451 0.036 0.688 sum 5.828 -10.993 -0.061 12.442 Atomic orbital electron populations 1.69970 1.07338 1.30170 1.45306 1.25992 0.95971 1.02799 0.91994 0.84963 0.78574 0.76087 0.78863 1.19114 1.18973 1.18960 1.23815 0.97917 0.90734 1.59497 0.87865 1.83700 0.98368 0.95171 1.78679 1.26556 0.99010 0.85687 0.92291 1.68667 0.95226 1.33230 1.29412 1.24161 1.00606 0.92050 0.97961 1.83479 0.90316 1.03166 1.75588 1.25957 1.01894 0.95153 1.11892 1.21045 0.88408 0.98578 1.00299 1.20431 0.93740 0.93377 1.23224 1.16983 0.84682 0.85673 0.77086 1.90774 1.85371 1.14343 1.52982 1.43980 1.07432 1.05367 1.63574 1.17975 0.82661 1.04274 0.96055 1.21313 0.96788 0.99256 0.95877 1.21426 0.92465 0.97901 1.00727 1.21759 1.01493 0.96925 0.91195 1.21427 0.92466 0.97894 1.00730 1.21312 0.96828 0.99219 0.95868 1.21151 0.97744 0.88613 1.02268 1.22349 0.92716 0.96789 1.02442 1.21048 0.90721 0.91434 1.03846 0.90530 0.86741 0.81986 0.81105 0.81976 0.86726 0.91959 0.89988 0.89970 0.86865 0.88550 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.15 13.22 21.63 0.29 -46.87 16 2 C 0.04 2.09 5.49 84.85 0.47 2.55 16 3 Si 0.99 40.86 29.55 68.60 2.03 42.89 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.57 -30.70 9.24 67.94 0.63 -30.07 16 8 H 0.10 5.72 6.52 -2.91 -0.02 5.70 16 9 S 0.20 9.73 20.40 -56.49 -1.15 8.58 16 10 C 0.33 15.90 7.76 179.51 1.39 17.30 16 11 N -0.54 -26.10 8.46 -190.42 -1.61 -27.71 16 12 C 0.09 4.06 7.66 84.36 0.65 4.71 16 13 S 0.21 7.08 23.24 -56.49 -1.31 5.77 16 14 C -0.23 -6.81 7.25 25.13 0.18 -6.62 16 15 C -0.07 -2.54 6.59 -18.20 -0.12 -2.66 16 16 C -0.29 -12.40 6.07 -19.87 -0.12 -12.52 16 17 C 0.56 25.75 7.47 85.38 0.64 26.39 16 18 O -0.55 -26.49 17.05 -4.98 -0.08 -26.57 16 19 N -0.48 -21.59 2.66 -470.35 -1.25 -22.84 16 20 C 0.08 3.12 3.16 38.12 0.12 3.24 16 21 C -0.11 -3.90 9.97 22.39 0.22 -3.67 16 22 C -0.11 -2.73 10.04 22.25 0.22 -2.51 16 23 C -0.10 -2.12 10.04 22.29 0.22 -1.90 16 24 C -0.11 -2.73 10.04 22.25 0.22 -2.51 16 25 C -0.11 -3.89 9.97 22.39 0.22 -3.67 16 26 C -0.06 -1.57 6.82 30.93 0.21 -1.36 16 27 C -0.10 -1.79 7.13 31.37 0.22 -1.56 16 28 C -0.03 -0.57 6.82 30.86 0.21 -0.36 16 29 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.11 371.38 3.60 -67.52 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.10 Total: 14.47 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 5.59 Total: -15.24 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -2.57 Total: -97.42 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.08 Total: -26.57 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 16.81 SS G_CDS: -2.47 Total: 14.35 kcal Total: -71.11 3.60 -67.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002250753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.644 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds