Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35290 * 125.47279 * 2 1 4 4 C 1.40117 * 107.23001 * 179.74398 * 3 2 1 5 5 C 1.38068 * 106.51578 * 0.35272 * 4 3 2 6 6 C 1.41319 * 126.11475 * 179.90861 * 5 4 3 7 7 O 1.21443 * 119.99941 * 359.71499 * 6 5 4 8 8 C 1.50702 * 119.99841 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47159 * 179.72629 * 8 6 5 10 10 O 1.42901 * 110.45846 * 64.29672 * 9 8 6 11 11 C 1.51133 * 110.51393 * 186.90162 * 9 8 6 12 12 C 1.37450 * 133.05816 * 298.86859 * 11 9 8 13 13 C 1.38403 * 119.99816 * 179.89614 * 12 11 9 14 14 C 1.38301 * 119.83169 * 359.90968 * 13 12 11 15 15 C 1.37938 * 120.37110 * 359.97438 * 14 13 12 16 16 C 1.39201 * 106.18602 * 118.60206 * 11 9 8 17 17 N 1.39532 * 110.26753 * 0.11842 * 16 11 9 18 18 C 1.46500 * 123.87804 * 179.97438 * 17 16 11 19 19 C 1.53006 * 109.46594 * 269.99892 * 18 17 16 20 20 C 1.50705 * 109.46777 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.37872 * 119.99496 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00459 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99762 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47170 * 59.99967 * 24 22 20 26 26 H 1.48494 * 109.47155 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47096 * 300.00048 * 24 22 20 28 28 C 1.34372 * 112.24532 * 359.92257 * 17 16 11 29 29 O 1.21289 * 126.44352 * 179.97438 * 28 17 16 30 30 O 1.33832 * 125.47247 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46730 * 300.01723 * 1 2 3 33 33 H 1.08996 * 109.46837 * 60.01326 * 1 2 3 34 34 H 1.08006 * 126.38129 * 359.97438 * 3 2 1 35 35 H 1.07994 * 126.74253 * 180.26482 * 4 3 2 36 36 H 1.09004 * 109.46965 * 299.72487 * 8 6 5 37 37 H 1.08994 * 109.46990 * 59.72341 * 8 6 5 38 38 H 0.96703 * 113.99837 * 300.70399 * 10 9 8 39 39 H 1.07995 * 119.95750 * 359.80190 * 12 11 9 40 40 H 1.07999 * 120.07762 * 179.97438 * 13 12 11 41 41 H 1.07997 * 119.81156 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.93554 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47460 * 29.99626 * 18 17 16 44 44 H 1.08994 * 109.47333 * 150.00232 * 18 17 16 45 45 H 1.08998 * 109.47000 * 300.00015 * 19 18 17 46 46 H 1.08994 * 109.47003 * 60.00138 * 19 18 17 47 47 H 0.97005 * 120.00382 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2921 1.1018 0.0000 4 6 3.6229 0.6632 0.0060 5 6 3.5813 -0.7169 0.0013 6 6 4.6973 -1.5838 0.0028 7 8 5.8220 -1.1258 0.0036 8 6 4.4917 -3.0768 -0.0023 9 6 5.8511 -3.7788 -0.0063 10 8 6.5626 -3.4964 1.2004 11 6 5.6767 -5.2697 -0.1815 12 6 5.0398 -6.2340 0.5627 13 6 5.0470 -7.5517 0.1396 14 6 5.6944 -7.8941 -1.0336 15 6 6.3327 -6.9294 -1.7850 16 6 6.3301 -5.6004 -1.3653 17 7 6.8950 -4.4612 -1.9400 18 6 7.6529 -4.4692 -3.1937 19 6 9.1345 -4.7037 -2.8923 20 6 9.9141 -4.7126 -4.1820 21 1 9.4040 -4.5653 -5.1225 22 6 11.2788 -4.9077 -4.1612 23 7 11.9001 -5.0865 -3.0160 24 14 12.2454 -4.9180 -5.7597 25 1 12.0801 -3.6117 -6.4465 26 1 13.6833 -5.1456 -5.4673 27 1 11.7408 -6.0053 -6.6362 28 6 6.6630 -3.3559 -1.2121 29 8 7.0346 -2.2309 -1.4719 30 8 2.2837 -1.0899 0.0005 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5141 0.8898 33 1 -0.3633 0.5136 -0.8901 34 1 1.9558 2.1281 -0.0004 35 1 4.5073 1.2828 0.0116 36 1 3.9340 -3.3698 0.8872 37 1 3.9322 -3.3633 -0.8927 38 1 6.7281 -2.5552 1.3483 39 1 4.5354 -5.9629 1.4783 40 1 4.5474 -8.3105 0.7236 41 1 5.7001 -8.9225 -1.3633 42 1 6.8365 -7.2046 -2.6999 43 1 7.2823 -5.2671 -3.8373 44 1 7.5319 -3.5103 -3.6975 45 1 9.5051 -3.9058 -2.2488 46 1 9.2555 -5.6626 -2.3885 47 1 12.8604 -5.2235 -3.0013 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002840420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -56.297249 kcal Electronic energy + Delta-G solvation = -33497.854625 eV Core-core repulsion = 28999.299965 eV Total energy + Delta-G solvation = -4498.554660 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.02874 -41.70857 -39.45654 -38.06670 -36.51281 -35.66532 -33.73802 -33.51182 -32.55865 -32.24041 -30.65753 -30.38781 -28.70353 -27.90350 -26.12466 -24.50351 -22.65287 -22.34675 -21.92767 -21.54978 -21.01940 -20.12743 -19.72146 -17.89190 -17.59931 -16.85465 -16.71206 -16.36926 -16.11170 -15.78049 -15.42960 -15.28540 -14.86789 -14.72677 -14.39540 -14.17938 -13.97741 -13.68672 -13.65327 -13.50571 -13.35699 -13.30837 -13.16270 -12.78880 -12.70383 -12.57444 -12.40483 -12.36808 -12.16057 -11.83980 -11.49547 -11.08781 -10.95202 -10.91218 -10.76073 -10.34579 -10.31882 -10.12375 -10.01939 -9.47494 -9.37399 -9.09013 -8.86995 -8.79569 -8.39348 -7.57853 -6.03189 -4.08304 0.45310 1.22257 1.45592 1.90196 2.40154 2.67067 2.73068 3.13782 3.32175 3.36803 3.39271 3.67832 3.89924 4.17435 4.22459 4.25922 4.36874 4.43584 4.55281 4.73342 4.80368 4.93585 4.95340 5.08097 5.08383 5.17189 5.21143 5.32078 5.32370 5.38342 5.45041 5.50326 5.58992 5.68412 5.70034 5.88268 5.96892 6.01741 6.22649 6.30414 6.46228 6.52709 6.58449 6.66146 6.81679 6.98063 7.24966 7.36913 7.56220 7.60000 7.73395 7.93221 8.23363 8.34874 8.97291 9.55923 11.07983 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.002741 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.022296 B =10214.189709 C =11988.848850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.028 3.972 3 C -0.229 4.229 4 C -0.103 4.103 5 C -0.110 4.110 6 C 0.414 3.586 7 O -0.394 6.394 8 C -0.173 4.173 9 C 0.163 3.837 10 O -0.526 6.526 11 C -0.150 4.150 12 C -0.046 4.046 13 C -0.159 4.159 14 C -0.073 4.073 15 C -0.142 4.142 16 C 0.179 3.821 17 N -0.544 5.544 18 C 0.110 3.890 19 C 0.013 3.987 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.061 3.939 23 N -0.890 5.890 24 Si 0.896 3.104 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 C 0.498 3.502 29 O -0.459 6.459 30 O -0.152 6.152 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.387 0.613 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.643 3.757 9.363 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 C -0.248 4.248 4 C -0.123 4.123 5 C -0.160 4.160 6 C 0.291 3.709 7 O -0.267 6.267 8 C -0.211 4.211 9 C 0.118 3.882 10 O -0.335 6.335 11 C -0.153 4.153 12 C -0.064 4.064 13 C -0.179 4.179 14 C -0.092 4.092 15 C -0.163 4.163 16 C 0.081 3.919 17 N -0.266 5.266 18 C -0.009 4.009 19 C -0.025 4.025 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.724 3.276 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C 0.283 3.717 29 O -0.329 6.329 30 O -0.048 6.048 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.238 0.762 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.652 3.784 9.236 27.525 hybrid contribution 0.808 0.743 -0.995 1.482 sum -24.844 4.527 8.241 26.564 Atomic orbital electron populations 1.20464 0.84433 1.04684 1.04164 1.22974 0.94482 0.84221 1.00846 1.21611 0.92498 0.99935 1.10787 1.22536 0.98728 0.93287 0.97745 1.21721 0.82943 0.95112 1.16180 1.19708 0.86461 0.90263 0.74477 1.90829 1.22881 1.78993 1.34041 1.22564 0.98401 0.93410 1.06742 1.20151 0.90207 0.92095 0.85754 1.86596 1.77275 1.31930 1.37658 1.19351 1.05600 0.92932 0.97392 1.20120 0.96798 0.91585 0.97913 1.20956 1.03327 0.95616 0.97962 1.20906 0.95372 0.98799 0.94106 1.20503 1.03673 0.89544 1.02547 1.18380 0.92347 0.88662 0.92489 1.46303 1.49704 1.06130 1.24415 1.22164 0.94723 1.02443 0.81604 1.19401 0.87399 0.97842 0.97825 1.20977 0.92528 1.50497 0.92436 0.92432 1.25004 0.97799 0.95005 0.96368 1.69969 1.09477 1.48415 1.24917 0.86590 0.78880 0.78634 0.83508 1.20124 1.21193 1.20129 1.21087 0.80868 0.84698 0.85002 1.90832 1.50829 1.19461 1.71797 1.84035 1.16037 1.34527 1.70206 0.90042 0.89022 0.89003 0.82512 0.81942 0.86207 0.86902 0.76160 0.85704 0.85553 0.85302 0.84969 0.90734 0.90324 0.95951 0.96047 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.41 36.01 0.37 0.06 16 2 C 0.03 0.23 7.30 -35.36 -0.26 -0.03 16 3 C -0.23 -1.97 10.75 -39.93 -0.43 -2.40 16 4 C -0.10 -1.14 10.61 -38.94 -0.41 -1.56 16 5 C -0.11 -1.35 6.89 -38.47 -0.26 -1.61 16 6 C 0.41 5.77 6.42 -33.14 -0.21 5.56 16 7 O -0.39 -6.73 11.59 -24.57 -0.28 -7.02 16 8 C -0.17 -2.17 4.80 -27.88 -0.13 -2.31 16 9 C 0.16 2.64 1.02 -92.37 -0.09 2.55 16 10 O -0.53 -8.86 13.07 -49.80 -0.65 -9.51 16 11 C -0.15 -2.32 5.37 -104.34 -0.56 -2.88 16 12 C -0.05 -0.56 10.02 -39.81 -0.40 -0.96 16 13 C -0.16 -1.76 10.07 -39.50 -0.40 -2.16 16 14 C -0.07 -0.88 10.02 -39.67 -0.40 -1.28 16 15 C -0.14 -2.16 9.74 -39.27 -0.38 -2.54 16 16 C 0.18 3.13 6.70 -83.57 -0.56 2.57 16 17 N -0.54 -11.00 2.73 -113.16 -0.31 -11.31 16 18 C 0.11 2.42 5.67 -4.04 -0.02 2.40 16 19 C 0.01 0.36 5.30 -27.88 -0.15 0.21 16 20 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 24 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.50 10.16 6.95 -10.82 -0.08 10.08 16 29 O -0.46 -10.64 14.35 -19.26 -0.28 -10.92 16 30 O -0.15 -1.61 10.47 4.95 0.05 -1.56 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.39 6.02 7.02 45.56 0.32 6.34 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 2.00 7.70 -52.48 -0.40 1.60 16 43 H 0.07 1.47 7.62 -51.93 -0.40 1.07 16 44 H 0.08 1.77 7.95 -51.93 -0.41 1.35 16 45 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -36.74 402.57 -9.98 -46.72 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.51 Total: 5.39 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.78 Total: -8.04 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.43 Total: -38.06 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.16 Total: -29.01 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.74 -9.98 -46.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002840420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.580 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds