Wall clock time and date at job start Tue Mar 31 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35288 * 125.47154 * 2 1 4 4 C 1.40121 * 107.22626 * 179.73724 * 3 2 1 5 5 C 1.38062 * 106.51911 * 0.35066 * 4 3 2 6 6 C 1.41314 * 126.11989 * 179.90762 * 5 4 3 7 7 O 1.21442 * 119.99711 * 359.71722 * 6 5 4 8 8 C 1.50700 * 120.00547 * 179.71552 * 6 5 4 9 9 C 1.52999 * 109.47497 * 180.02562 * 8 6 5 10 10 O 1.42903 * 110.44964 * 300.70014 * 9 8 6 11 11 C 1.51131 * 110.62654 * 178.02205 * 9 8 6 12 12 C 1.37677 * 132.85891 * 61.24407 * 11 9 8 13 13 C 1.38394 * 119.91682 * 180.02562 * 12 11 9 14 14 C 1.38298 * 119.82917 * 0.02562 * 13 12 11 15 15 C 1.37941 * 120.36988 * 0.02562 * 14 13 12 16 16 C 1.38904 * 106.33906 * 241.29148 * 11 9 8 17 17 N 1.39531 * 110.22989 * 359.97438 * 16 11 9 18 18 C 1.46502 * 123.87972 * 179.97438 * 17 16 11 19 19 C 1.52997 * 109.47066 * 270.00291 * 18 17 16 20 20 C 1.50703 * 109.46979 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00347 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99807 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00365 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46909 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46934 * 120.00303 * 24 22 20 27 27 H 1.48496 * 109.47358 * 240.00247 * 24 22 20 28 28 C 1.34372 * 112.24695 * 0.02562 * 17 16 11 29 29 O 1.21288 * 126.44947 * 179.97438 * 28 17 16 30 30 O 1.33839 * 125.46963 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47392 * 300.02488 * 1 2 3 33 33 H 1.09007 * 109.46429 * 60.02280 * 1 2 3 34 34 H 1.07999 * 126.38391 * 359.97438 * 3 2 1 35 35 H 1.07992 * 126.73952 * 180.26184 * 4 3 2 36 36 H 1.09003 * 109.46868 * 59.99687 * 8 6 5 37 37 H 1.09003 * 109.46691 * 300.00345 * 8 6 5 38 38 H 0.96700 * 114.00311 * 61.15123 * 10 9 8 39 39 H 1.08001 * 120.03963 * 0.03445 * 12 11 9 40 40 H 1.08004 * 120.08233 * 179.97438 * 13 12 11 41 41 H 1.08000 * 119.81520 * 179.97438 * 14 13 12 42 42 H 1.08012 * 119.92982 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.47040 * 30.00083 * 18 17 16 44 44 H 1.09002 * 109.47132 * 150.00204 * 18 17 16 45 45 H 1.09003 * 109.47508 * 299.99683 * 19 18 17 46 46 H 1.08995 * 109.47833 * 59.99759 * 19 18 17 47 47 H 0.97000 * 120.00356 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2921 1.1018 0.0000 4 6 3.6229 0.6631 0.0061 5 6 3.5813 -0.7169 0.0016 6 6 4.6972 -1.5839 0.0033 7 8 5.8220 -1.1259 0.0041 8 6 4.4917 -3.0768 0.0042 9 6 5.8510 -3.7789 0.0067 10 8 6.6100 -3.4015 -1.1439 11 6 5.6753 -5.2791 0.0564 12 6 5.0716 -6.1799 -0.7918 13 6 5.0663 -7.5276 -0.4772 14 6 5.6676 -7.9641 0.6892 15 6 6.2723 -7.0635 1.5413 16 6 6.2826 -5.7050 1.2308 17 7 6.8205 -4.6163 1.9181 18 6 7.5288 -4.7261 3.1958 19 6 6.5288 -4.5940 4.3462 20 6 7.2575 -4.7064 5.6606 21 1 8.3268 -4.8573 5.6741 22 6 6.5590 -4.6164 6.8459 23 7 5.2568 -4.4331 6.8296 24 14 7.4622 -4.7564 8.4751 25 1 8.9114 -4.9589 8.2219 26 1 7.2664 -3.5099 9.2583 27 1 6.9268 -5.9110 9.2403 28 6 6.6133 -3.4553 1.2740 29 8 6.9697 -2.3550 1.6393 30 8 2.2837 -1.0900 0.0005 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5142 0.8897 33 1 -0.3632 0.5135 -0.8903 34 1 1.9558 2.1281 -0.0004 35 1 4.5073 1.2828 0.0117 36 1 3.9339 -3.3673 -0.8862 37 1 3.9321 -3.3659 0.8938 38 1 6.8039 -2.4555 -1.1943 39 1 4.6028 -5.8352 -1.7017 40 1 4.5930 -8.2365 -1.1405 41 1 5.6630 -9.0158 0.9347 42 1 6.7402 -7.4122 2.4502 43 1 8.0241 -5.6953 3.2545 44 1 8.2728 -3.9328 3.2682 45 1 6.0334 -3.6248 4.2876 46 1 5.7848 -5.3872 4.2739 47 1 4.7654 -4.3702 7.6635 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002840421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:57 Heat of formation + Delta-G solvation = -59.047056 kcal Electronic energy + Delta-G solvation = -33687.317981 eV Core-core repulsion = 29188.644080 eV Total energy + Delta-G solvation = -4498.673901 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.93343 -41.71154 -39.43934 -38.09178 -36.48778 -35.68413 -33.65017 -33.52754 -32.52802 -32.19119 -30.67273 -30.36238 -28.71481 -27.84432 -26.11294 -24.50298 -22.58120 -22.35977 -21.83991 -21.57075 -21.05188 -20.10116 -19.68446 -17.85134 -17.54082 -16.82681 -16.74523 -16.43842 -16.01834 -15.77966 -15.40930 -15.20381 -14.85235 -14.71646 -14.34252 -14.21121 -13.94758 -13.72023 -13.56403 -13.41934 -13.27928 -13.26360 -13.16152 -12.81436 -12.72509 -12.49586 -12.34740 -12.27114 -12.22877 -11.84570 -11.55401 -11.11850 -11.01076 -10.86224 -10.76341 -10.32981 -10.25076 -10.13160 -10.01951 -9.50909 -9.40237 -9.12198 -8.86601 -8.71360 -8.43994 -7.59765 -6.08271 -4.12520 0.52340 1.22325 1.44789 1.99203 2.49883 2.72499 2.74806 3.12158 3.27461 3.35182 3.39453 3.74312 3.90536 4.17656 4.23978 4.30002 4.40073 4.42702 4.64148 4.79709 4.88395 4.98612 5.04783 5.07680 5.15598 5.24907 5.28187 5.29036 5.37673 5.39970 5.53742 5.58264 5.61987 5.69271 5.76314 5.87787 5.96563 6.10691 6.22831 6.30211 6.45438 6.57863 6.61698 6.62838 6.80858 6.96939 7.25622 7.34511 7.54890 7.58126 7.68467 7.88489 8.19902 8.31877 8.93291 9.52163 11.03122 Molecular weight = 369.15amu Principal moments of inertia in cm(-1) A = 0.007028 B = 0.003384 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.385300 B = 8273.457475 C =10504.018488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.032 3.968 3 C -0.231 4.231 4 C -0.101 4.101 5 C -0.112 4.112 6 C 0.427 3.573 7 O -0.410 6.410 8 C -0.175 4.175 9 C 0.164 3.836 10 O -0.532 6.532 11 C -0.149 4.149 12 C -0.046 4.046 13 C -0.159 4.159 14 C -0.074 4.074 15 C -0.141 4.141 16 C 0.179 3.821 17 N -0.544 5.544 18 C 0.109 3.891 19 C 0.013 3.987 20 C -0.523 4.523 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.891 5.891 24 Si 0.896 3.104 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 C 0.499 3.501 29 O -0.464 6.464 30 O -0.151 6.151 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.388 0.612 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 2.208 -19.446 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.021 4.021 3 C -0.250 4.250 4 C -0.120 4.120 5 C -0.161 4.161 6 C 0.305 3.695 7 O -0.285 6.285 8 C -0.213 4.213 9 C 0.119 3.881 10 O -0.341 6.341 11 C -0.152 4.152 12 C -0.065 4.065 13 C -0.178 4.178 14 C -0.092 4.092 15 C -0.162 4.162 16 C 0.081 3.919 17 N -0.265 5.265 18 C -0.010 4.010 19 C -0.025 4.025 20 C -0.562 4.562 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.530 5.530 24 Si 0.723 3.277 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 C 0.285 3.715 29 O -0.335 6.335 30 O -0.046 6.046 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.241 0.759 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.298 2.269 -19.117 21.379 hybrid contribution 0.367 0.713 1.360 1.579 sum -8.930 2.983 -17.757 20.099 Atomic orbital electron populations 1.20477 0.84405 1.04779 1.04156 1.22995 0.94526 0.84200 1.00421 1.21602 0.92477 0.99929 1.10966 1.22515 0.98717 0.93224 0.97568 1.21632 0.83024 0.95068 1.16418 1.19617 0.86354 0.90170 0.73311 1.90679 1.23269 1.79039 1.35517 1.22559 0.98412 0.93371 1.06951 1.20121 0.90090 0.91820 0.86043 1.86541 1.74419 1.32007 1.41174 1.19343 1.06088 0.92457 0.97336 1.20184 0.96619 0.92055 0.97596 1.20961 1.03436 0.95011 0.98383 1.20907 0.95599 0.99251 0.93467 1.20504 1.04227 0.89623 1.01828 1.18291 0.93122 0.89295 0.91176 1.46287 1.52215 1.05664 1.22342 1.22174 0.96268 1.02222 0.80335 1.19410 0.94110 0.97981 0.90974 1.21064 0.94248 1.50501 0.90392 0.92263 1.24994 0.94846 0.94921 0.99378 1.69981 1.06577 1.49299 1.27115 0.86477 0.79976 0.77713 0.83509 1.19589 1.20903 1.20886 1.21086 0.80368 0.84189 0.85886 1.90818 1.50165 1.22371 1.70145 1.84047 1.15987 1.34515 1.70088 0.89971 0.88907 0.89037 0.82485 0.81968 0.86177 0.86541 0.75897 0.85667 0.85540 0.85287 0.84956 0.90690 0.90248 0.96112 0.96022 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.41 36.01 0.37 -0.07 16 2 C 0.03 0.31 7.30 -35.36 -0.26 0.05 16 3 C -0.23 -2.28 10.76 -39.93 -0.43 -2.71 16 4 C -0.10 -1.23 10.61 -38.94 -0.41 -1.64 16 5 C -0.11 -1.53 6.88 -38.48 -0.26 -1.80 16 6 C 0.43 6.46 6.44 -33.14 -0.21 6.24 16 7 O -0.41 -7.10 11.78 -25.08 -0.30 -7.40 16 8 C -0.18 -2.46 4.79 -27.88 -0.13 -2.59 16 9 C 0.16 2.69 1.02 -92.37 -0.09 2.60 16 10 O -0.53 -8.45 13.03 -53.57 -0.70 -9.14 16 11 C -0.15 -2.32 5.36 -104.37 -0.56 -2.88 16 12 C -0.05 -0.57 10.03 -39.73 -0.40 -0.97 16 13 C -0.16 -1.75 10.07 -39.50 -0.40 -2.15 16 14 C -0.07 -0.89 10.02 -39.67 -0.40 -1.28 16 15 C -0.14 -2.14 9.74 -39.27 -0.38 -2.52 16 16 C 0.18 3.12 6.69 -83.69 -0.56 2.56 16 17 N -0.54 -10.99 2.73 -113.25 -0.31 -11.30 16 18 C 0.11 2.40 5.67 -4.04 -0.02 2.38 16 19 C 0.01 0.34 5.30 -27.88 -0.15 0.20 16 20 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 24 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 25 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.50 10.22 6.98 -10.83 -0.08 10.14 16 29 O -0.46 -10.81 14.85 -18.25 -0.27 -11.08 16 30 O -0.15 -1.86 10.47 4.92 0.05 -1.81 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.39 5.82 6.61 45.56 0.30 6.12 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.13 1.99 7.70 -52.48 -0.40 1.59 16 43 H 0.07 1.49 7.61 -51.93 -0.40 1.09 16 44 H 0.08 1.80 7.95 -51.93 -0.41 1.39 16 45 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 402.86 15.07 6.07 6.07 Total: -1.00 -35.64 402.86 -10.05 -45.69 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.53 Total: 6.37 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -4.78 Total: -7.92 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.43 Total: -37.41 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.21 Total: -29.43 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.64 -10.05 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002840421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.358 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds